data_7FVL # _model_server_result.job_id 6weyuoH45-lz5p6F59Bgmw _model_server_result.datetime_utc '2024-10-10 10:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1901}' # _entry.id 7FVL # _exptl.entry_id 7FVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(2S)-5,5-dimethyl-1,4-dioxan-2-yl]methyl}-4-(3-hydroxybenzoyl)piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.96 _cell.angle_gamma 90 _cell.entry_id 7FVL _cell.length_a 81.936 _cell.length_b 27.426 _cell.length_c 56.272 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H27 N3 O5' _chem_comp.formula_weight 377.435 _chem_comp.id ZP0 _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(2S)-5,5-dimethyl-1,4-dioxan-2-yl]methyl}-4-(3-hydroxybenzoyl)piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 ZP0 sing 376 n n C03 C02 ZP0 sing 377 n n C04 C02 ZP0 sing 378 n n O05 C04 ZP0 sing 379 n n C06 O05 ZP0 sing 380 n n N08 C07 ZP0 sing 381 n n C09 N08 ZP0 sing 382 n n O10 C09 ZP0 doub 383 n n N11 C09 ZP0 sing 384 n n C12 N11 ZP0 sing 385 n n C13 C12 ZP0 sing 386 n n N14 C13 ZP0 sing 387 n n C16 C15 ZP0 sing 388 n n C15 N14 ZP0 sing 389 n n C17 N14 ZP0 sing 390 n n O18 C17 ZP0 doub 391 n n C19 C17 ZP0 sing 392 n n C20 C19 ZP0 doub 393 n y C21 C20 ZP0 sing 394 n y C22 C21 ZP0 doub 395 n y C23 C22 ZP0 sing 396 n y O24 C23 ZP0 sing 397 n n C25 C23 ZP0 doub 398 n y C07 C06 ZP0 sing 399 n n C26 C06 ZP0 sing 400 n n O27 C26 ZP0 sing 401 n n C02 O27 ZP0 sing 402 n n N11 C16 ZP0 sing 403 n n C19 C25 ZP0 sing 404 n y C13 H132 ZP0 sing 405 n n C13 H131 ZP0 sing 406 n n C15 H151 ZP0 sing 407 n n C15 H152 ZP0 sing 408 n n C20 H201 ZP0 sing 409 n n C21 H211 ZP0 sing 410 n n C22 H221 ZP0 sing 411 n n C26 H261 ZP0 sing 412 n n C26 H262 ZP0 sing 413 n n C01 H011 ZP0 sing 414 n n C01 H012 ZP0 sing 415 n n C01 H013 ZP0 sing 416 n n C03 H032 ZP0 sing 417 n n C03 H033 ZP0 sing 418 n n C03 H031 ZP0 sing 419 n n C04 H042 ZP0 sing 420 n n C04 H041 ZP0 sing 421 n n C06 H061 ZP0 sing 422 n n C07 H072 ZP0 sing 423 n n C07 H071 ZP0 sing 424 n n N08 H081 ZP0 sing 425 n n C12 H122 ZP0 sing 426 n n C12 H121 ZP0 sing 427 n n C16 H162 ZP0 sing 428 n n C16 H161 ZP0 sing 429 n n O24 H241 ZP0 sing 430 n n C25 H251 ZP0 sing 431 n n # _atom_sites.entry_id 7FVL _atom_sites.fract_transf_matrix[1][1] 0.012205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZP0 A 1 1901 1901 ZP0 LIG . C 3 HOH A 1 2001 34 HOH HOH . C 3 HOH A 2 2002 32 HOH HOH . C 3 HOH A 3 2003 40 HOH HOH . C 3 HOH A 4 2004 1627 HOH HOH . C 3 HOH A 5 2005 1745 HOH HOH . C 3 HOH A 6 2006 37 HOH HOH . C 3 HOH A 7 2007 17 HOH HOH . C 3 HOH A 8 2008 1610 HOH HOH . C 3 HOH A 9 2009 1605 HOH HOH . C 3 HOH A 10 2010 1648 HOH HOH . C 3 HOH A 11 2011 1757 HOH HOH . C 3 HOH A 12 2012 27 HOH HOH . C 3 HOH A 13 2013 1624 HOH HOH . C 3 HOH A 14 2014 1739 HOH HOH . C 3 HOH A 15 2015 1642 HOH HOH . C 3 HOH A 16 2016 1676 HOH HOH . C 3 HOH A 17 2017 1603 HOH HOH . C 3 HOH A 18 2018 36 HOH HOH . C 3 HOH A 19 2019 1678 HOH HOH . C 3 HOH A 20 2020 1609 HOH HOH . C 3 HOH A 21 2021 1625 HOH HOH . C 3 HOH A 22 2022 1622 HOH HOH . C 3 HOH A 23 2023 29 HOH HOH . C 3 HOH A 24 2024 11 HOH HOH . C 3 HOH A 25 2025 1615 HOH HOH . C 3 HOH A 26 2026 1606 HOH HOH . C 3 HOH A 27 2027 1629 HOH HOH . C 3 HOH A 28 2028 1771 HOH HOH . C 3 HOH A 29 2029 1628 HOH HOH . C 3 HOH A 30 2030 1602 HOH HOH . C 3 HOH A 31 2031 1645 HOH HOH . C 3 HOH A 32 2032 1634 HOH HOH . C 3 HOH A 33 2033 1682 HOH HOH . C 3 HOH A 34 2034 1617 HOH HOH . C 3 HOH A 35 2035 1658 HOH HOH . C 3 HOH A 36 2036 1734 HOH HOH . C 3 HOH A 37 2037 1626 HOH HOH . C 3 HOH A 38 2038 30 HOH HOH . C 3 HOH A 39 2039 1646 HOH HOH . C 3 HOH A 40 2040 1704 HOH HOH . C 3 HOH A 41 2041 1620 HOH HOH . C 3 HOH A 42 2042 10 HOH HOH . C 3 HOH A 43 2043 1644 HOH HOH . C 3 HOH A 44 2044 38 HOH HOH . C 3 HOH A 45 2045 1661 HOH HOH . C 3 HOH A 46 2046 1663 HOH HOH . C 3 HOH A 47 2047 1732 HOH HOH . C 3 HOH A 48 2048 1632 HOH HOH . C 3 HOH A 49 2049 1613 HOH HOH . C 3 HOH A 50 2050 1746 HOH HOH . C 3 HOH A 51 2051 1623 HOH HOH . C 3 HOH A 52 2052 1776 HOH HOH . C 3 HOH A 53 2053 9 HOH HOH . C 3 HOH A 54 2054 2 HOH HOH . C 3 HOH A 55 2055 1730 HOH HOH . C 3 HOH A 56 2056 1619 HOH HOH . C 3 HOH A 57 2057 1672 HOH HOH . C 3 HOH A 58 2058 1673 HOH HOH . C 3 HOH A 59 2059 39 HOH HOH . C 3 HOH A 60 2060 1714 HOH HOH . C 3 HOH A 61 2061 1668 HOH HOH . C 3 HOH A 62 2062 1643 HOH HOH . C 3 HOH A 63 2063 35 HOH HOH . C 3 HOH A 64 2064 1681 HOH HOH . C 3 HOH A 65 2065 1652 HOH HOH . C 3 HOH A 66 2066 1651 HOH HOH . C 3 HOH A 67 2067 1665 HOH HOH . C 3 HOH A 68 2068 1686 HOH HOH . C 3 HOH A 69 2069 1685 HOH HOH . C 3 HOH A 70 2070 1693 HOH HOH . C 3 HOH A 71 2071 1669 HOH HOH . C 3 HOH A 72 2072 1687 HOH HOH . C 3 HOH A 73 2073 1728 HOH HOH . C 3 HOH A 74 2074 1655 HOH HOH . C 3 HOH A 75 2075 1731 HOH HOH . C 3 HOH A 76 2076 1662 HOH HOH . C 3 HOH A 77 2077 1689 HOH HOH . C 3 HOH A 78 2078 1692 HOH HOH . C 3 HOH A 79 2079 42 HOH HOH . C 3 HOH A 80 2080 1650 HOH HOH . C 3 HOH A 81 2081 1666 HOH HOH . C 3 HOH A 82 2082 1733 HOH HOH . C 3 HOH A 83 2083 1637 HOH HOH . C 3 HOH A 84 2084 1696 HOH HOH . C 3 HOH A 85 2085 33 HOH HOH . C 3 HOH A 86 2086 1700 HOH HOH . C 3 HOH A 87 2087 1740 HOH HOH . C 3 HOH A 88 2088 1797 HOH HOH . C 3 HOH A 89 2089 1721 HOH HOH . C 3 HOH A 90 2090 1680 HOH HOH . C 3 HOH A 91 2091 1701 HOH HOH . C 3 HOH A 92 2092 1675 HOH HOH . C 3 HOH A 93 2093 1720 HOH HOH . C 3 HOH A 94 2094 1604 HOH HOH . C 3 HOH A 95 2095 1671 HOH HOH . C 3 HOH A 96 2096 1688 HOH HOH . C 3 HOH A 97 2097 1621 HOH HOH . C 3 HOH A 98 2098 1708 HOH HOH . C 3 HOH A 99 2099 1741 HOH HOH . C 3 HOH A 100 2100 1690 HOH HOH . C 3 HOH A 101 2101 12 HOH HOH . C 3 HOH A 102 2102 1630 HOH HOH . C 3 HOH A 103 2103 31 HOH HOH . C 3 HOH A 104 2104 1649 HOH HOH . C 3 HOH A 105 2105 1723 HOH HOH . C 3 HOH A 106 2106 1709 HOH HOH . C 3 HOH A 107 2107 1640 HOH HOH . C 3 HOH A 108 2108 1738 HOH HOH . C 3 HOH A 109 2109 1667 HOH HOH . C 3 HOH A 110 2110 1611 HOH HOH . C 3 HOH A 111 2111 16 HOH HOH . C 3 HOH A 112 2112 19 HOH HOH . C 3 HOH A 113 2113 1674 HOH HOH . C 3 HOH A 114 2114 1725 HOH HOH . C 3 HOH A 115 2115 1677 HOH HOH . C 3 HOH A 116 2116 1713 HOH HOH . C 3 HOH A 117 2117 1699 HOH HOH . C 3 HOH A 118 2118 1719 HOH HOH . C 3 HOH A 119 2119 1735 HOH HOH . C 3 HOH A 120 2120 1 HOH HOH . C 3 HOH A 121 2121 1715 HOH HOH . C 3 HOH A 122 2122 1737 HOH HOH . C 3 HOH A 123 2123 1703 HOH HOH . C 3 HOH A 124 2124 1724 HOH HOH . C 3 HOH A 125 2125 1706 HOH HOH . C 3 HOH A 126 2126 1736 HOH HOH . C 3 HOH A 127 2127 1638 HOH HOH . C 3 HOH A 128 2128 1729 HOH HOH . C 3 HOH A 129 2129 1710 HOH HOH . C 3 HOH A 130 2130 1716 HOH HOH . C 3 HOH A 131 2131 1727 HOH HOH . C 3 HOH A 132 2132 1744 HOH HOH . C 3 HOH A 133 2133 1767 HOH HOH . C 3 HOH A 134 2134 1694 HOH HOH . C 3 HOH A 135 2135 1684 HOH HOH . C 3 HOH A 136 2136 13 HOH HOH . C 3 HOH A 137 2137 1722 HOH HOH . C 3 HOH A 138 2138 1697 HOH HOH . C 3 HOH A 139 2139 1726 HOH HOH . C 3 HOH A 140 2140 3 HOH HOH . C 3 HOH A 141 2141 20 HOH HOH . C 3 HOH A 142 2142 1759 HOH HOH . C 3 HOH A 143 2143 28 HOH HOH . C 3 HOH A 144 2144 1801 HOH HOH . C 3 HOH A 145 2145 1711 HOH HOH . C 3 HOH A 146 2146 1656 HOH HOH . C 3 HOH A 147 2147 26 HOH HOH . C 3 HOH A 148 2148 25 HOH HOH . C 3 HOH A 149 2149 41 HOH HOH . C 3 HOH A 150 2150 1618 HOH HOH . C 3 HOH A 151 2151 1779 HOH HOH . C 3 HOH A 152 2152 1752 HOH HOH . C 3 HOH A 153 2153 1748 HOH HOH . C 3 HOH A 154 2154 1756 HOH HOH . C 3 HOH A 155 2155 1753 HOH HOH . C 3 HOH A 156 2156 1763 HOH HOH . C 3 HOH A 157 2157 14 HOH HOH . C 3 HOH A 158 2158 1751 HOH HOH . C 3 HOH A 159 2159 23 HOH HOH . C 3 HOH A 160 2160 8 HOH HOH . C 3 HOH A 161 2161 1794 HOH HOH . C 3 HOH A 162 2162 1769 HOH HOH . C 3 HOH A 163 2163 1766 HOH HOH . C 3 HOH A 164 2164 1770 HOH HOH . C 3 HOH A 165 2165 1747 HOH HOH . C 3 HOH A 166 2166 1765 HOH HOH . C 3 HOH A 167 2167 5 HOH HOH . C 3 HOH A 168 2168 1784 HOH HOH . C 3 HOH A 169 2169 1742 HOH HOH . C 3 HOH A 170 2170 1768 HOH HOH . C 3 HOH A 171 2171 1758 HOH HOH . C 3 HOH A 172 2172 1762 HOH HOH . C 3 HOH A 173 2173 1761 HOH HOH . C 3 HOH A 174 2174 1786 HOH HOH . C 3 HOH A 175 2175 1743 HOH HOH . C 3 HOH A 176 2176 1796 HOH HOH . C 3 HOH A 177 2177 1774 HOH HOH . C 3 HOH A 178 2178 1795 HOH HOH . C 3 HOH A 179 2179 1783 HOH HOH . C 3 HOH A 180 2180 1780 HOH HOH . C 3 HOH A 181 2181 1778 HOH HOH . C 3 HOH A 182 2182 1777 HOH HOH . C 3 HOH A 183 2183 1764 HOH HOH . C 3 HOH A 184 2184 24 HOH HOH . C 3 HOH A 185 2185 1785 HOH HOH . C 3 HOH A 186 2186 1775 HOH HOH . C 3 HOH A 187 2187 1782 HOH HOH . C 3 HOH A 188 2188 1789 HOH HOH . C 3 HOH A 189 2189 1791 HOH HOH . C 3 HOH A 190 2190 1781 HOH HOH . C 3 HOH A 191 2191 1787 HOH HOH . C 3 HOH A 192 2192 1754 HOH HOH . C 3 HOH A 193 2193 22 HOH HOH . C 3 HOH A 194 2194 1790 HOH HOH . C 3 HOH A 195 2195 1792 HOH HOH . C 3 HOH A 196 2196 1798 HOH HOH . C 3 HOH A 197 2197 1800 HOH HOH . C 3 HOH A 198 2198 1799 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 ZP0 . . . B 2 -19.943 12.236 25.805 0.59 34.34 ? C13 ZP0 1901 A 1 HETATM 2 C C15 ZP0 . . . B 2 -19.03 14.343 25.21 0.59 34.66 ? C15 ZP0 1901 A 1 HETATM 3 C C17 ZP0 . . . B 2 -17.692 12.16 24.601 0.59 31.11 ? C17 ZP0 1901 A 1 HETATM 4 C C20 ZP0 . . . B 2 -16.123 12.688 22.684 0.59 31.38 ? C20 ZP0 1901 A 1 HETATM 5 C C21 ZP0 . . . B 2 -15.056 13.392 22.145 0.59 30.59 ? C21 ZP0 1901 A 1 HETATM 6 C C22 ZP0 . . . B 2 -14.4 14.352 22.911 0.59 32.04 ? C22 ZP0 1901 A 1 HETATM 7 C C26 ZP0 . . . B 2 -23.386 17.375 31.357 0.59 40.01 ? C26 ZP0 1901 A 1 HETATM 8 C C01 ZP0 . . . B 2 -22.765 15.395 34.211 0.59 41.2 ? C01 ZP0 1901 A 1 HETATM 9 C C02 ZP0 . . . B 2 -22.167 16.196 33.043 0.59 42.42 ? C02 ZP0 1901 A 1 HETATM 10 C C03 ZP0 . . . B 2 -20.748 16.662 33.396 0.59 43.7 ? C03 ZP0 1901 A 1 HETATM 11 C C04 ZP0 . . . B 2 -22.035 15.252 31.854 0.59 40.62 ? C04 ZP0 1901 A 1 HETATM 12 O O05 ZP0 . . . B 2 -21.477 15.957 30.776 0.59 38.17 ? O05 ZP0 1901 A 1 HETATM 13 C C06 ZP0 . . . B 2 -22.283 17.002 30.346 0.59 39.37 ? C06 ZP0 1901 A 1 HETATM 14 C C07 ZP0 . . . B 2 -22.854 16.498 29.014 0.59 38.72 ? C07 ZP0 1901 A 1 HETATM 15 N N08 ZP0 . . . B 2 -21.745 15.968 28.218 0.59 38.19 ? N08 ZP0 1901 A 1 HETATM 16 C C09 ZP0 . . . B 2 -21.444 14.532 28.181 0.59 38.44 ? C09 ZP0 1901 A 1 HETATM 17 O O10 ZP0 . . . B 2 -22.101 13.737 28.801 0.59 34.91 ? O10 ZP0 1901 A 1 HETATM 18 N N11 ZP0 . . . B 2 -20.317 14.057 27.379 0.59 35.85 ? N11 ZP0 1901 A 1 HETATM 19 C C12 ZP0 . . . B 2 -19.97 12.65 27.28 0.59 36 ? C12 ZP0 1901 A 1 HETATM 20 N N14 ZP0 . . . B 2 -18.822 12.883 25.175 0.59 33.33 ? N14 ZP0 1901 A 1 HETATM 21 C C16 ZP0 . . . B 2 -19.409 14.895 26.587 0.59 34.7 ? C16 ZP0 1901 A 1 HETATM 22 O O18 ZP0 . . . B 2 -17.659 10.959 24.629 0.59 30.55 ? O18 ZP0 1901 A 1 HETATM 23 C C19 ZP0 . . . B 2 -16.535 12.947 23.985 0.59 31.22 ? C19 ZP0 1901 A 1 HETATM 24 C C23 ZP0 . . . B 2 -14.805 14.622 24.207 0.59 32.32 ? C23 ZP0 1901 A 1 HETATM 25 O O24 ZP0 . . . B 2 -14.113 15.602 24.947 0.59 33.15 ? O24 ZP0 1901 A 1 HETATM 26 C C25 ZP0 . . . B 2 -15.868 13.903 24.761 0.59 30.37 ? C25 ZP0 1901 A 1 HETATM 27 O O27 ZP0 . . . B 2 -22.946 17.333 32.702 0.59 40.3 ? O27 ZP0 1901 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #