data_7FY9 # _model_server_result.job_id OYozk7oPOpajcZJv6JzbVg _model_server_result.datetime_utc '2025-08-20 00:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7FY9 # _exptl.entry_id 7FY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5P)-2-cyclopentyl-4-(4-fluorophenyl)-6-[1-(methoxymethyl)cyclopentyl]-3-methyl-5-(1H-tetrazol-5-yl)pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FY9 _cell.length_a 31.672 _cell.length_b 53.455 _cell.length_c 72.409 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 F N5 O' _chem_comp.formula_weight 435.537 _chem_comp.id K7C _chem_comp.mon_nstd_flag . _chem_comp.name (5P)-2-cyclopentyl-4-(4-fluorophenyl)-6-[1-(methoxymethyl)cyclopentyl]-3-methyl-5-(1H-tetrazol-5-yl)pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 K7C doub 182 n y C02 N03 K7C sing 183 n y N03 C04 K7C doub 184 n y C04 C05 K7C sing 185 n y C01 C06 K7C sing 186 n y C05 C06 K7C doub 187 n y C06 C07 K7C sing 188 n n C05 C08 K7C sing 189 n n C04 C09 K7C sing 190 n n C09 C10 K7C sing 191 n n C10 C11 K7C sing 192 n n C11 C12 K7C sing 193 n n C09 C13 K7C sing 194 n n C12 C13 K7C sing 195 n n C02 C14 K7C sing 196 n n C14 C15 K7C sing 197 n n C15 C16 K7C sing 198 n n C16 C17 K7C sing 199 n n C14 C18 K7C sing 200 n n C17 C18 K7C sing 201 n n C01 C19 K7C sing 202 n n C09 C20 K7C sing 203 n n C20 O21 K7C sing 204 n n O21 C22 K7C sing 205 n n C08 N23 K7C sing 206 n y N23 N24 K7C sing 207 n y N24 N25 K7C doub 208 n y C08 N26 K7C doub 209 n y N25 N26 K7C sing 210 n y C07 C27 K7C doub 211 n y C27 C28 K7C sing 212 n y C28 C29 K7C doub 213 n y C29 C30 K7C sing 214 n y C07 C31 K7C sing 215 n y C30 C31 K7C doub 216 n y C29 F32 K7C sing 217 n n C10 H34 K7C sing 218 n n C10 H33 K7C sing 219 n n C11 H35 K7C sing 220 n n C11 H36 K7C sing 221 n n C13 H40 K7C sing 222 n n C13 H39 K7C sing 223 n n C15 H43 K7C sing 224 n n C15 H42 K7C sing 225 n n C16 H45 K7C sing 226 n n C16 H44 K7C sing 227 n n C17 H47 K7C sing 228 n n C17 H46 K7C sing 229 n n C18 H49 K7C sing 230 n n C18 H48 K7C sing 231 n n C19 H52 K7C sing 232 n n C19 H51 K7C sing 233 n n C19 H50 K7C sing 234 n n C20 H53 K7C sing 235 n n C20 H54 K7C sing 236 n n C22 H57 K7C sing 237 n n C22 H56 K7C sing 238 n n C22 H55 K7C sing 239 n n C27 H59 K7C sing 240 n n C28 H60 K7C sing 241 n n C12 H37 K7C sing 242 n n C12 H38 K7C sing 243 n n C14 H41 K7C sing 244 n n N23 H58 K7C sing 245 n n C30 H61 K7C sing 246 n n C31 H62 K7C sing 247 n n # _atom_sites.entry_id 7FY9 _atom_sites.fract_transf_matrix[1][1] 0.031574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K7C A 1 201 1 K7C L0R . C 3 DMS A 1 202 1 DMS DMS . D 4 HOH A 1 301 60 HOH HOH . D 4 HOH A 2 302 63 HOH HOH . D 4 HOH A 3 303 29 HOH HOH . D 4 HOH A 4 304 53 HOH HOH . D 4 HOH A 5 305 43 HOH HOH . D 4 HOH A 6 306 39 HOH HOH . D 4 HOH A 7 307 50 HOH HOH . D 4 HOH A 8 308 62 HOH HOH . D 4 HOH A 9 309 35 HOH HOH . D 4 HOH A 10 310 21 HOH HOH . D 4 HOH A 11 311 55 HOH HOH . D 4 HOH A 12 312 65 HOH HOH . D 4 HOH A 13 313 27 HOH HOH . D 4 HOH A 14 314 15 HOH HOH . D 4 HOH A 15 315 14 HOH HOH . D 4 HOH A 16 316 2 HOH HOH . D 4 HOH A 17 317 59 HOH HOH . D 4 HOH A 18 318 54 HOH HOH . D 4 HOH A 19 319 56 HOH HOH . D 4 HOH A 20 320 64 HOH HOH . D 4 HOH A 21 321 4 HOH HOH . D 4 HOH A 22 322 5 HOH HOH . D 4 HOH A 23 323 1 HOH HOH . D 4 HOH A 24 324 34 HOH HOH . D 4 HOH A 25 325 10 HOH HOH . D 4 HOH A 26 326 38 HOH HOH . D 4 HOH A 27 327 17 HOH HOH . D 4 HOH A 28 328 16 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 67 HOH HOH . D 4 HOH A 31 331 26 HOH HOH . D 4 HOH A 32 332 30 HOH HOH . D 4 HOH A 33 333 9 HOH HOH . D 4 HOH A 34 334 31 HOH HOH . D 4 HOH A 35 335 44 HOH HOH . D 4 HOH A 36 336 19 HOH HOH . D 4 HOH A 37 337 7 HOH HOH . D 4 HOH A 38 338 3 HOH HOH . D 4 HOH A 39 339 28 HOH HOH . D 4 HOH A 40 340 8 HOH HOH . D 4 HOH A 41 341 36 HOH HOH . D 4 HOH A 42 342 47 HOH HOH . D 4 HOH A 43 343 41 HOH HOH . D 4 HOH A 44 344 20 HOH HOH . D 4 HOH A 45 345 42 HOH HOH . D 4 HOH A 46 346 32 HOH HOH . D 4 HOH A 47 347 52 HOH HOH . D 4 HOH A 48 348 51 HOH HOH . D 4 HOH A 49 349 37 HOH HOH . D 4 HOH A 50 350 6 HOH HOH . D 4 HOH A 51 351 57 HOH HOH . D 4 HOH A 52 352 24 HOH HOH . D 4 HOH A 53 353 11 HOH HOH . D 4 HOH A 54 354 66 HOH HOH . D 4 HOH A 55 355 49 HOH HOH . D 4 HOH A 56 356 13 HOH HOH . D 4 HOH A 57 357 40 HOH HOH . D 4 HOH A 58 358 22 HOH HOH . D 4 HOH A 59 359 48 HOH HOH . D 4 HOH A 60 360 25 HOH HOH . D 4 HOH A 61 361 33 HOH HOH . D 4 HOH A 62 362 61 HOH HOH . D 4 HOH A 63 363 46 HOH HOH . D 4 HOH A 64 364 23 HOH HOH . D 4 HOH A 65 365 12 HOH HOH . D 4 HOH A 66 366 58 HOH HOH . D 4 HOH A 67 367 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 K7C . . . B 2 1.277 3.585 12.984 1 12.09 ? C01 K7C 201 A 1 HETATM 2 C C02 K7C . . . B 2 0.032 3.282 12.334 1 16.65 ? C02 K7C 201 A 1 HETATM 3 N N03 K7C . . . B 2 -1.133 3.225 13.07 1 8.2 ? N03 K7C 201 A 1 HETATM 4 C C04 K7C . . . B 2 -1.108 3.444 14.438 1 4.66 ? C04 K7C 201 A 1 HETATM 5 C C05 K7C . . . B 2 0.114 3.769 15.101 1 18.41 ? C05 K7C 201 A 1 HETATM 6 C C06 K7C . . . B 2 1.284 3.814 14.374 1 17.53 ? C06 K7C 201 A 1 HETATM 7 C C07 K7C . . . B 2 2.505 4.121 15.105 1 20.68 ? C07 K7C 201 A 1 HETATM 8 C C10 K7C . . . B 2 -2.735 4.704 15.73 1 15.51 ? C10 K7C 201 A 1 HETATM 9 C C11 K7C . . . B 2 -3.592 5.46 14.81 1 26.37 ? C11 K7C 201 A 1 HETATM 10 C C13 K7C . . . B 2 -3.559 3.15 14.147 1 18.96 ? C13 K7C 201 A 1 HETATM 11 C C15 K7C . . . B 2 -1.387 2.233 10.54 1 12.71 ? C15 K7C 201 A 1 HETATM 12 C C16 K7C . . . B 2 -2.31 3.241 9.868 1 19.99 ? C16 K7C 201 A 1 HETATM 13 C C17 K7C . . . B 2 -1.329 4.135 9.164 1 29.04 ? C17 K7C 201 A 1 HETATM 14 C C18 K7C . . . B 2 -0.119 4.206 10.039 1 18.29 ? C18 K7C 201 A 1 HETATM 15 C C19 K7C . . . B 2 2.581 3.651 12.208 1 17.91 ? C19 K7C 201 A 1 HETATM 16 C C20 K7C . . . B 2 -2.438 2.289 16.196 1 19.44 ? C20 K7C 201 A 1 HETATM 17 C C22 K7C . . . B 2 -2.111 -0.091 16.507 1 26.81 ? C22 K7C 201 A 1 HETATM 18 C C27 K7C . . . B 2 3.491 3.105 15.36 1 22.84 ? C27 K7C 201 A 1 HETATM 19 C C28 K7C . . . B 2 4.65 3.419 16.047 1 22.19 ? C28 K7C 201 A 1 HETATM 20 C C08 K7C . . . B 2 0.244 4.018 16.617 1 13.13 ? C08 K7C 201 A 1 HETATM 21 C C09 K7C . . . B 2 -2.467 3.395 15.143 1 16.12 ? C09 K7C 201 A 1 HETATM 22 C C12 K7C . . . B 2 -4.149 4.494 13.8 1 27.68 ? C12 K7C 201 A 1 HETATM 23 C C14 K7C . . . B 2 -0.104 2.979 10.837 1 17.53 ? C14 K7C 201 A 1 HETATM 24 O O21 K7C . . . B 2 -2.173 1.035 15.614 1 20.75 ? O21 K7C 201 A 1 HETATM 25 N N23 K7C . . . B 2 -0.017 5.149 17.294 1 13.63 ? N23 K7C 201 A 1 HETATM 26 N N24 K7C . . . B 2 0.225 4.924 18.62 1 21.05 ? N24 K7C 201 A 1 HETATM 27 N N25 K7C . . . B 2 0.652 3.652 18.746 1 20.02 ? N25 K7C 201 A 1 HETATM 28 N N26 K7C . . . B 2 0.667 3.091 17.512 1 18.84 ? N26 K7C 201 A 1 HETATM 29 C C29 K7C . . . B 2 4.883 4.75 16.502 1 24.29 ? C29 K7C 201 A 1 HETATM 30 C C30 K7C . . . B 2 3.917 5.763 16.244 1 16.62 ? C30 K7C 201 A 1 HETATM 31 C C31 K7C . . . B 2 2.742 5.447 15.555 1 19.39 ? C31 K7C 201 A 1 HETATM 32 F F32 K7C . . . B 2 5.968 5.049 17.149 1 27.01 ? F32 K7C 201 A 1 HETATM 33 H H34 K7C . . . B 2 -1.887 5.189 15.867 1 18.62 ? H34 K7C 201 A 1 HETATM 34 H H33 K7C . . . B 2 -3.193 4.594 16.583 1 18.62 ? H33 K7C 201 A 1 HETATM 35 H H35 K7C . . . B 2 -3.081 6.128 14.37 1 31.64 ? H35 K7C 201 A 1 HETATM 36 H H36 K7C . . . B 2 -4.309 5.868 15.296 1 31.64 ? H36 K7C 201 A 1 HETATM 37 H H40 K7C . . . B 2 -4.23 2.579 14.513 1 22.75 ? H40 K7C 201 A 1 HETATM 38 H H39 K7C . . . B 2 -3.205 2.761 13.339 1 22.75 ? H39 K7C 201 A 1 HETATM 39 H H43 K7C . . . B 2 -1.811 1.898 11.373 1 15.25 ? H43 K7C 201 A 1 HETATM 40 H H42 K7C . . . B 2 -1.205 1.476 9.92 1 15.25 ? H42 K7C 201 A 1 HETATM 41 H H45 K7C . . . B 2 -2.822 3.736 10.526 1 23.99 ? H45 K7C 201 A 1 HETATM 42 H H44 K7C . . . B 2 -2.906 2.795 9.222 1 23.99 ? H44 K7C 201 A 1 HETATM 43 H H47 K7C . . . B 2 -1.722 5.046 9.049 1 34.85 ? H47 K7C 201 A 1 HETATM 44 H H46 K7C . . . B 2 -1.093 3.755 8.288 1 34.85 ? H46 K7C 201 A 1 HETATM 45 H H49 K7C . . . B 2 0.688 4.249 9.489 1 21.94 ? H49 K7C 201 A 1 HETATM 46 H H48 K7C . . . B 2 -0.172 4.985 10.618 1 21.94 ? H48 K7C 201 A 1 HETATM 47 H H52 K7C . . . B 2 2.503 4.31 11.514 1 21.49 ? H52 K7C 201 A 1 HETATM 48 H H51 K7C . . . B 2 2.753 2.802 11.813 1 21.49 ? H51 K7C 201 A 1 HETATM 49 H H50 K7C . . . B 2 3.317 3.886 12.779 1 21.49 ? H50 K7C 201 A 1 HETATM 50 H H53 K7C . . . B 2 -3.299 2.253 16.654 1 23.33 ? H53 K7C 201 A 1 HETATM 51 H H54 K7C . . . B 2 -1.748 2.483 16.842 1 23.33 ? H54 K7C 201 A 1 HETATM 52 H H57 K7C . . . B 2 -1.554 -0.804 16.101 1 32.17 ? H57 K7C 201 A 1 HETATM 53 H H56 K7C . . . B 2 -3.018 -0.436 16.665 1 32.17 ? H56 K7C 201 A 1 HETATM 54 H H55 K7C . . . B 2 -1.713 0.188 17.361 1 32.17 ? H55 K7C 201 A 1 HETATM 55 H H59 K7C . . . B 2 3.341 2.198 15.056 1 27.41 ? H59 K7C 201 A 1 HETATM 56 H H60 K7C . . . B 2 5.317 2.719 16.223 1 26.63 ? H60 K7C 201 A 1 HETATM 57 H H37 K7C . . . B 2 -3.883 4.754 12.911 1 33.22 ? H37 K7C 201 A 1 HETATM 58 H H38 K7C . . . B 2 -5.112 4.463 13.865 1 33.22 ? H38 K7C 201 A 1 HETATM 59 H H41 K7C . . . B 2 0.626 2.388 10.53 1 21.04 ? H41 K7C 201 A 1 HETATM 60 H H61 K7C . . . B 2 4.07 6.664 16.554 1 19.94 ? H61 K7C 201 A 1 HETATM 61 H H62 K7C . . . B 2 2.073 6.152 15.377 1 23.27 ? H62 K7C 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 61 #