data_7FYB # _model_server_result.job_id w6s2lfEnodQOt1uoTpV8Xw _model_server_result.datetime_utc '2024-11-26 04:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7FYB # _exptl.entry_id 7FYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FYB _cell.length_a 32.564 _cell.length_b 53.666 _cell.length_c 74.652 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7FYB _atom_sites.fract_transf_matrix[1][1] 0.030709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 1 DMS DMS . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 VIY A 1 204 1 VIY L0R . F 5 FMT A 1 205 1 FMT FMT . G 6 HOH A 1 301 156 HOH HOH . G 6 HOH A 2 302 84 HOH HOH . G 6 HOH A 3 303 139 HOH HOH . G 6 HOH A 4 304 143 HOH HOH . G 6 HOH A 5 305 150 HOH HOH . G 6 HOH A 6 306 120 HOH HOH . G 6 HOH A 7 307 23 HOH HOH . G 6 HOH A 8 308 95 HOH HOH . G 6 HOH A 9 309 101 HOH HOH . G 6 HOH A 10 310 140 HOH HOH . G 6 HOH A 11 311 136 HOH HOH . G 6 HOH A 12 312 51 HOH HOH . G 6 HOH A 13 313 138 HOH HOH . G 6 HOH A 14 314 146 HOH HOH . G 6 HOH A 15 315 48 HOH HOH . G 6 HOH A 16 316 64 HOH HOH . G 6 HOH A 17 317 130 HOH HOH . G 6 HOH A 18 318 89 HOH HOH . G 6 HOH A 19 319 115 HOH HOH . G 6 HOH A 20 320 26 HOH HOH . G 6 HOH A 21 321 36 HOH HOH . G 6 HOH A 22 322 42 HOH HOH . G 6 HOH A 23 323 57 HOH HOH . G 6 HOH A 24 324 31 HOH HOH . G 6 HOH A 25 325 99 HOH HOH . G 6 HOH A 26 326 8 HOH HOH . G 6 HOH A 27 327 38 HOH HOH . G 6 HOH A 28 328 17 HOH HOH . G 6 HOH A 29 329 22 HOH HOH . G 6 HOH A 30 330 134 HOH HOH . G 6 HOH A 31 331 25 HOH HOH . G 6 HOH A 32 332 7 HOH HOH . G 6 HOH A 33 333 90 HOH HOH . G 6 HOH A 34 334 126 HOH HOH . G 6 HOH A 35 335 28 HOH HOH . G 6 HOH A 36 336 53 HOH HOH . G 6 HOH A 37 337 75 HOH HOH . G 6 HOH A 38 338 111 HOH HOH . G 6 HOH A 39 339 15 HOH HOH . G 6 HOH A 40 340 9 HOH HOH . G 6 HOH A 41 341 13 HOH HOH . G 6 HOH A 42 342 122 HOH HOH . G 6 HOH A 43 343 104 HOH HOH . G 6 HOH A 44 344 11 HOH HOH . G 6 HOH A 45 345 5 HOH HOH . G 6 HOH A 46 346 6 HOH HOH . G 6 HOH A 47 347 142 HOH HOH . G 6 HOH A 48 348 4 HOH HOH . G 6 HOH A 49 349 82 HOH HOH . G 6 HOH A 50 350 3 HOH HOH . G 6 HOH A 51 351 87 HOH HOH . G 6 HOH A 52 352 52 HOH HOH . G 6 HOH A 53 353 61 HOH HOH . G 6 HOH A 54 354 154 HOH HOH . G 6 HOH A 55 355 92 HOH HOH . G 6 HOH A 56 356 153 HOH HOH . G 6 HOH A 57 357 141 HOH HOH . G 6 HOH A 58 358 109 HOH HOH . G 6 HOH A 59 359 152 HOH HOH . G 6 HOH A 60 360 45 HOH HOH . G 6 HOH A 61 361 1 HOH HOH . G 6 HOH A 62 362 66 HOH HOH . G 6 HOH A 63 363 27 HOH HOH . G 6 HOH A 64 364 19 HOH HOH . G 6 HOH A 65 365 60 HOH HOH . G 6 HOH A 66 366 114 HOH HOH . G 6 HOH A 67 367 113 HOH HOH . G 6 HOH A 68 368 79 HOH HOH . G 6 HOH A 69 369 71 HOH HOH . G 6 HOH A 70 370 29 HOH HOH . G 6 HOH A 71 371 70 HOH HOH . G 6 HOH A 72 372 44 HOH HOH . G 6 HOH A 73 373 10 HOH HOH . G 6 HOH A 74 374 110 HOH HOH . G 6 HOH A 75 375 18 HOH HOH . G 6 HOH A 76 376 49 HOH HOH . G 6 HOH A 77 377 16 HOH HOH . G 6 HOH A 78 378 55 HOH HOH . G 6 HOH A 79 379 125 HOH HOH . G 6 HOH A 80 380 98 HOH HOH . G 6 HOH A 81 381 40 HOH HOH . G 6 HOH A 82 382 20 HOH HOH . G 6 HOH A 83 383 24 HOH HOH . G 6 HOH A 84 384 78 HOH HOH . G 6 HOH A 85 385 12 HOH HOH . G 6 HOH A 86 386 80 HOH HOH . G 6 HOH A 87 387 81 HOH HOH . G 6 HOH A 88 388 35 HOH HOH . G 6 HOH A 89 389 124 HOH HOH . G 6 HOH A 90 390 2 HOH HOH . G 6 HOH A 91 391 63 HOH HOH . G 6 HOH A 92 392 30 HOH HOH . G 6 HOH A 93 393 145 HOH HOH . G 6 HOH A 94 394 118 HOH HOH . G 6 HOH A 95 395 74 HOH HOH . G 6 HOH A 96 396 97 HOH HOH . G 6 HOH A 97 397 112 HOH HOH . G 6 HOH A 98 398 39 HOH HOH . G 6 HOH A 99 399 32 HOH HOH . G 6 HOH A 100 400 73 HOH HOH . G 6 HOH A 101 401 86 HOH HOH . G 6 HOH A 102 402 34 HOH HOH . G 6 HOH A 103 403 116 HOH HOH . G 6 HOH A 104 404 77 HOH HOH . G 6 HOH A 105 405 94 HOH HOH . G 6 HOH A 106 406 108 HOH HOH . G 6 HOH A 107 407 47 HOH HOH . G 6 HOH A 108 408 144 HOH HOH . G 6 HOH A 109 409 58 HOH HOH . G 6 HOH A 110 410 43 HOH HOH . G 6 HOH A 111 411 135 HOH HOH . G 6 HOH A 112 412 133 HOH HOH . G 6 HOH A 113 413 37 HOH HOH . G 6 HOH A 114 414 155 HOH HOH . G 6 HOH A 115 415 137 HOH HOH . G 6 HOH A 116 416 50 HOH HOH . G 6 HOH A 117 417 83 HOH HOH . G 6 HOH A 118 418 46 HOH HOH . G 6 HOH A 119 419 119 HOH HOH . G 6 HOH A 120 420 62 HOH HOH . G 6 HOH A 121 421 85 HOH HOH . G 6 HOH A 122 422 69 HOH HOH . G 6 HOH A 123 423 100 HOH HOH . G 6 HOH A 124 424 68 HOH HOH . G 6 HOH A 125 425 91 HOH HOH . G 6 HOH A 126 426 41 HOH HOH . G 6 HOH A 127 427 131 HOH HOH . G 6 HOH A 128 428 151 HOH HOH . G 6 HOH A 129 429 93 HOH HOH . G 6 HOH A 130 430 59 HOH HOH . G 6 HOH A 131 431 56 HOH HOH . G 6 HOH A 132 432 96 HOH HOH . G 6 HOH A 133 433 128 HOH HOH . G 6 HOH A 134 434 76 HOH HOH . G 6 HOH A 135 435 148 HOH HOH . G 6 HOH A 136 436 127 HOH HOH . G 6 HOH A 137 437 123 HOH HOH . G 6 HOH A 138 438 54 HOH HOH . G 6 HOH A 139 439 117 HOH HOH . G 6 HOH A 140 440 149 HOH HOH . G 6 HOH A 141 441 102 HOH HOH . G 6 HOH A 142 442 14 HOH HOH . G 6 HOH A 143 443 103 HOH HOH . G 6 HOH A 144 444 67 HOH HOH . G 6 HOH A 145 445 88 HOH HOH . G 6 HOH A 146 446 147 HOH HOH . G 6 HOH A 147 447 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 9.75 21.066 1.279 1 26.38 ? S DMS 201 A 1 HETATM 2 O O DMS . . . B 2 11.1 20.723 1.713 1 34.72 ? O DMS 201 A 1 HETATM 3 C C1 DMS . . . B 2 8.817 21.062 2.694 1 18.93 ? C1 DMS 201 A 1 HETATM 4 C C2 DMS . . . B 2 9.789 22.774 1.123 1 30.66 ? C2 DMS 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #