data_7FZP
#
_model_server_result.job_id            U88LYDKXI4PCioa-N8rwaQ 
_model_server_result.datetime_utc      '2024-10-15 15:26:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7fzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7FZP 
#
_exptl.entry_id    7FZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.812 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-({[(4-chlorophenyl)methyl]sulfanyl}methyl)-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7FZP 
_cell.length_a            32.509 
_cell.length_b            53.906 
_cell.length_c            75.233 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7FZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H11 Cl N2 O S2' 
_chem_comp.formula_weight    298.812 
_chem_comp.id                WHI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-({[(4-chlorophenyl)methyl]sulfanyl}methyl)-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 WHI doub 384 n y 
C02 C03 WHI sing 385 n y 
C03 C04 WHI doub 386 n y 
C04 C05 WHI sing 387 n y 
C01 C06 WHI sing 388 n y 
C05 C06 WHI doub 389 n y 
C05 CL07 WHI sing 390 n n 
C02 C08 WHI sing 391 n n 
C08 S09 WHI sing 392 n n 
S09 C10 WHI sing 393 n n 
C10 C11 WHI sing 394 n n 
C11 C12 WHI doub 395 n n 
C12 C13 WHI sing 396 n n 
C13 N14 WHI sing 397 n n 
N14 C15 WHI sing 398 n n 
C11 N16 WHI sing 399 n n 
C15 N16 WHI sing 400 n n 
C13 O17 WHI doub 401 n n 
C15 S18 WHI doub 402 n n 
C01 H19 WHI sing 403 n n 
C04 H21 WHI sing 404 n n 
C06 H22 WHI sing 405 n n 
C10 H26 WHI sing 406 n n 
C10 H25 WHI sing 407 n n 
C03 H20 WHI sing 408 n n 
C08 H24 WHI sing 409 n n 
C08 H23 WHI sing 410 n n 
C12 H27 WHI sing 411 n n 
N14 H28 WHI sing 412 n n 
N16 H29 WHI sing 413 n n 
#
_atom_sites.entry_id                     7FZP 
_atom_sites.fract_transf_matrix[1][1]    0.030761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018551 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WHI A 1 201 1 WHI L0R . 
C 3 FMT A 1 202 1 FMT FMT . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 162 HOH HOH . 
F 5 HOH A 2 302 190 HOH HOH . 
F 5 HOH A 3 303 146 HOH HOH . 
F 5 HOH A 4 304 142 HOH HOH . 
F 5 HOH A 5 305 189 HOH HOH . 
F 5 HOH A 6 306 154 HOH HOH . 
F 5 HOH A 7 307 170 HOH HOH . 
F 5 HOH A 8 308 131 HOH HOH . 
F 5 HOH A 9 309 177 HOH HOH . 
F 5 HOH A 10 310 145 HOH HOH . 
F 5 HOH A 11 311 53 HOH HOH . 
F 5 HOH A 12 312 82 HOH HOH . 
F 5 HOH A 13 313 68 HOH HOH . 
F 5 HOH A 14 314 39 HOH HOH . 
F 5 HOH A 15 315 43 HOH HOH . 
F 5 HOH A 16 316 49 HOH HOH . 
F 5 HOH A 17 317 85 HOH HOH . 
F 5 HOH A 18 318 113 HOH HOH . 
F 5 HOH A 19 319 158 HOH HOH . 
F 5 HOH A 20 320 42 HOH HOH . 
F 5 HOH A 21 321 63 HOH HOH . 
F 5 HOH A 22 322 28 HOH HOH . 
F 5 HOH A 23 323 165 HOH HOH . 
F 5 HOH A 24 324 77 HOH HOH . 
F 5 HOH A 25 325 96 HOH HOH . 
F 5 HOH A 26 326 201 HOH HOH . 
F 5 HOH A 27 327 191 HOH HOH . 
F 5 HOH A 28 328 56 HOH HOH . 
F 5 HOH A 29 329 5 HOH HOH . 
F 5 HOH A 30 330 198 HOH HOH . 
F 5 HOH A 31 331 122 HOH HOH . 
F 5 HOH A 32 332 10 HOH HOH . 
F 5 HOH A 33 333 93 HOH HOH . 
F 5 HOH A 34 334 66 HOH HOH . 
F 5 HOH A 35 335 101 HOH HOH . 
F 5 HOH A 36 336 13 HOH HOH . 
F 5 HOH A 37 337 197 HOH HOH . 
F 5 HOH A 38 338 134 HOH HOH . 
F 5 HOH A 39 339 75 HOH HOH . 
F 5 HOH A 40 340 70 HOH HOH . 
F 5 HOH A 41 341 37 HOH HOH . 
F 5 HOH A 42 342 31 HOH HOH . 
F 5 HOH A 43 343 48 HOH HOH . 
F 5 HOH A 44 344 9 HOH HOH . 
F 5 HOH A 45 345 60 HOH HOH . 
F 5 HOH A 46 346 143 HOH HOH . 
F 5 HOH A 47 347 153 HOH HOH . 
F 5 HOH A 48 348 17 HOH HOH . 
F 5 HOH A 49 349 6 HOH HOH . 
F 5 HOH A 50 350 94 HOH HOH . 
F 5 HOH A 51 351 8 HOH HOH . 
F 5 HOH A 52 352 44 HOH HOH . 
F 5 HOH A 53 353 18 HOH HOH . 
F 5 HOH A 54 354 73 HOH HOH . 
F 5 HOH A 55 355 107 HOH HOH . 
F 5 HOH A 56 356 110 HOH HOH . 
F 5 HOH A 57 357 102 HOH HOH . 
F 5 HOH A 58 358 144 HOH HOH . 
F 5 HOH A 59 359 32 HOH HOH . 
F 5 HOH A 60 360 54 HOH HOH . 
F 5 HOH A 61 361 12 HOH HOH . 
F 5 HOH A 62 362 65 HOH HOH . 
F 5 HOH A 63 363 4 HOH HOH . 
F 5 HOH A 64 364 36 HOH HOH . 
F 5 HOH A 65 365 89 HOH HOH . 
F 5 HOH A 66 366 14 HOH HOH . 
F 5 HOH A 67 367 103 HOH HOH . 
F 5 HOH A 68 368 129 HOH HOH . 
F 5 HOH A 69 369 186 HOH HOH . 
F 5 HOH A 70 370 64 HOH HOH . 
F 5 HOH A 71 371 3 HOH HOH . 
F 5 HOH A 72 372 38 HOH HOH . 
F 5 HOH A 73 373 21 HOH HOH . 
F 5 HOH A 74 374 51 HOH HOH . 
F 5 HOH A 75 375 91 HOH HOH . 
F 5 HOH A 76 376 95 HOH HOH . 
F 5 HOH A 77 377 114 HOH HOH . 
F 5 HOH A 78 378 69 HOH HOH . 
F 5 HOH A 79 379 179 HOH HOH . 
F 5 HOH A 80 380 1 HOH HOH . 
F 5 HOH A 81 381 30 HOH HOH . 
F 5 HOH A 82 382 206 HOH HOH . 
F 5 HOH A 83 383 147 HOH HOH . 
F 5 HOH A 84 384 46 HOH HOH . 
F 5 HOH A 85 385 152 HOH HOH . 
F 5 HOH A 86 386 74 HOH HOH . 
F 5 HOH A 87 387 163 HOH HOH . 
F 5 HOH A 88 388 123 HOH HOH . 
F 5 HOH A 89 389 100 HOH HOH . 
F 5 HOH A 90 390 84 HOH HOH . 
F 5 HOH A 91 391 57 HOH HOH . 
F 5 HOH A 92 392 33 HOH HOH . 
F 5 HOH A 93 393 76 HOH HOH . 
F 5 HOH A 94 394 160 HOH HOH . 
F 5 HOH A 95 395 25 HOH HOH . 
F 5 HOH A 96 396 29 HOH HOH . 
F 5 HOH A 97 397 45 HOH HOH . 
F 5 HOH A 98 398 155 HOH HOH . 
F 5 HOH A 99 399 15 HOH HOH . 
F 5 HOH A 100 400 125 HOH HOH . 
F 5 HOH A 101 401 182 HOH HOH . 
F 5 HOH A 102 402 108 HOH HOH . 
F 5 HOH A 103 403 16 HOH HOH . 
F 5 HOH A 104 404 22 HOH HOH . 
F 5 HOH A 105 405 104 HOH HOH . 
F 5 HOH A 106 406 112 HOH HOH . 
F 5 HOH A 107 407 7 HOH HOH . 
F 5 HOH A 108 408 20 HOH HOH . 
F 5 HOH A 109 409 167 HOH HOH . 
F 5 HOH A 110 410 11 HOH HOH . 
F 5 HOH A 111 411 178 HOH HOH . 
F 5 HOH A 112 412 2 HOH HOH . 
F 5 HOH A 113 413 83 HOH HOH . 
F 5 HOH A 114 414 41 HOH HOH . 
F 5 HOH A 115 415 121 HOH HOH . 
F 5 HOH A 116 416 181 HOH HOH . 
F 5 HOH A 117 417 24 HOH HOH . 
F 5 HOH A 118 418 40 HOH HOH . 
F 5 HOH A 119 419 81 HOH HOH . 
F 5 HOH A 120 420 156 HOH HOH . 
F 5 HOH A 121 421 61 HOH HOH . 
F 5 HOH A 122 422 150 HOH HOH . 
F 5 HOH A 123 423 34 HOH HOH . 
F 5 HOH A 124 424 78 HOH HOH . 
F 5 HOH A 125 425 99 HOH HOH . 
F 5 HOH A 126 426 23 HOH HOH . 
F 5 HOH A 127 427 27 HOH HOH . 
F 5 HOH A 128 428 166 HOH HOH . 
F 5 HOH A 129 429 55 HOH HOH . 
F 5 HOH A 130 430 47 HOH HOH . 
F 5 HOH A 131 431 62 HOH HOH . 
F 5 HOH A 132 432 88 HOH HOH . 
F 5 HOH A 133 433 161 HOH HOH . 
F 5 HOH A 134 434 187 HOH HOH . 
F 5 HOH A 135 435 87 HOH HOH . 
F 5 HOH A 136 436 19 HOH HOH . 
F 5 HOH A 137 437 26 HOH HOH . 
F 5 HOH A 138 438 133 HOH HOH . 
F 5 HOH A 139 439 92 HOH HOH . 
F 5 HOH A 140 440 183 HOH HOH . 
F 5 HOH A 141 441 199 HOH HOH . 
F 5 HOH A 142 442 151 HOH HOH . 
F 5 HOH A 143 443 105 HOH HOH . 
F 5 HOH A 144 444 67 HOH HOH . 
F 5 HOH A 145 445 97 HOH HOH . 
F 5 HOH A 146 446 149 HOH HOH . 
F 5 HOH A 147 447 180 HOH HOH . 
F 5 HOH A 148 448 72 HOH HOH . 
F 5 HOH A 149 449 52 HOH HOH . 
F 5 HOH A 150 450 106 HOH HOH . 
F 5 HOH A 151 451 174 HOH HOH . 
F 5 HOH A 152 452 50 HOH HOH . 
F 5 HOH A 153 453 172 HOH HOH . 
F 5 HOH A 154 454 164 HOH HOH . 
F 5 HOH A 155 455 175 HOH HOH . 
F 5 HOH A 156 456 192 HOH HOH . 
F 5 HOH A 157 457 196 HOH HOH . 
F 5 HOH A 158 458 173 HOH HOH . 
F 5 HOH A 159 459 111 HOH HOH . 
F 5 HOH A 160 460 141 HOH HOH . 
F 5 HOH A 161 461 171 HOH HOH . 
F 5 HOH A 162 462 157 HOH HOH . 
F 5 HOH A 163 463 195 HOH HOH . 
F 5 HOH A 164 464 176 HOH HOH . 
F 5 HOH A 165 465 119 HOH HOH . 
F 5 HOH A 166 466 136 HOH HOH . 
F 5 HOH A 167 467 205 HOH HOH . 
F 5 HOH A 168 468 148 HOH HOH . 
F 5 HOH A 169 469 124 HOH HOH . 
F 5 HOH A 170 470 117 HOH HOH . 
F 5 HOH A 171 471 35 HOH HOH . 
F 5 HOH A 172 472 98 HOH HOH . 
F 5 HOH A 173 473 137 HOH HOH . 
F 5 HOH A 174 474 202 HOH HOH . 
F 5 HOH A 175 475 185 HOH HOH . 
F 5 HOH A 176 476 203 HOH HOH . 
F 5 HOH A 177 477 128 HOH HOH . 
F 5 HOH A 178 478 200 HOH HOH . 
F 5 HOH A 179 479 193 HOH HOH . 
F 5 HOH A 180 480 86 HOH HOH . 
F 5 HOH A 181 481 130 HOH HOH . 
F 5 HOH A 182 482 58 HOH HOH . 
F 5 HOH A 183 483 71 HOH HOH . 
F 5 HOH A 184 484 184 HOH HOH . 
F 5 HOH A 185 485 194 HOH HOH . 
F 5 HOH A 186 486 138 HOH HOH . 
F 5 HOH A 187 487 188 HOH HOH . 
F 5 HOH A 188 488 90 HOH HOH . 
F 5 HOH A 189 489 120 HOH HOH . 
F 5 HOH A 190 490 139 HOH HOH . 
F 5 HOH A 191 491 132 HOH HOH . 
F 5 HOH A 192 492 140 HOH HOH . 
F 5 HOH A 193 493 79 HOH HOH . 
F 5 HOH A 194 494 118 HOH HOH . 
F 5 HOH A 195 495 80 HOH HOH . 
F 5 HOH A 196 496 168 HOH HOH . 
F 5 HOH A 197 497 159 HOH HOH . 
F 5 HOH A 198 498 109 HOH HOH . 
F 5 HOH A 199 499 116 HOH HOH . 
F 5 HOH A 200 500 126 HOH HOH . 
F 5 HOH A 201 501 204 HOH HOH . 
F 5 HOH A 202 502 115 HOH HOH . 
F 5 HOH A 203 503 127 HOH HOH . 
F 5 HOH A 204 504 169 HOH HOH . 
F 5 HOH A 205 505 135 HOH HOH . 
F 5 HOH A 206 506 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 WHI . . . B 2 5.544 7.963 21.905 0.5 15.5 ? C01 WHI 201 A 1 
HETATM 2 C C02 WHI . . . B 2 5.14 7.495 20.691 0.5 14.16 ? C02 WHI 201 A 1 
HETATM 3 C C04 WHI . . . B 2 3.666 5.953 21.798 0.5 13.89 ? C04 WHI 201 A 1 
HETATM 4 C C05 WHI . . . B 2 4.008 6.48 22.997 0.5 18.08 ? C05 WHI 201 A 1 
HETATM 5 C C06 WHI . . . B 2 4.965 7.468 23.039 0.5 21.27 ? C06 WHI 201 A 1 
HETATM 6 C C10 WHI . . . B 2 8.064 8.247 17.91 0.5 15.58 ? C10 WHI 201 A 1 
HETATM 7 C C11 WHI . . . B 2 7.388 7.631 16.762 0.5 12.4 ? C11 WHI 201 A 1 
HETATM 8 C C13 WHI . . . B 2 5.964 8.205 14.758 0.5 16.17 ? C13 WHI 201 A 1 
HETATM 9 C C15 WHI . . . B 2 6.496 5.915 15.489 0.5 13.69 ? C15 WHI 201 A 1 
HETATM 10 C C03 WHI . . . B 2 4.2 6.49 20.669 0.5 16.74 ? C03 WHI 201 A 1 
HETATM 11 CL CL07 WHI . . . B 2 3.27 5.943 24.432 0.5 20.56 ? CL07 WHI 201 A 1 
HETATM 12 C C08 WHI . . . B 2 5.829 7.958 19.463 0.5 15.85 ? C08 WHI 201 A 1 
HETATM 13 S S09 WHI . . . B 2 7.542 7.533 19.449 0.5 15.66 ? S09 WHI 201 A 1 
HETATM 14 C C12 WHI . . . B 2 6.769 8.56 15.937 0.5 14.15 ? C12 WHI 201 A 1 
HETATM 15 N N14 WHI . . . B 2 5.904 6.812 14.669 0.5 18.52 ? N14 WHI 201 A 1 
HETATM 16 N N16 WHI . . . B 2 7.256 6.245 16.562 0.5 14.45 ? N16 WHI 201 A 1 
HETATM 17 O O17 WHI . . . B 2 5.447 9.058 13.894 0.5 19.55 ? O17 WHI 201 A 1 
HETATM 18 S S18 WHI . . . B 2 6.303 4.568 15.141 0.5 19.76 ? S18 WHI 201 A 1 
HETATM 19 H H19 WHI . . . B 2 6.215 8.661 21.962 0.5 15.6 ? H19 WHI 201 A 1 
HETATM 20 H H21 WHI . . . B 2 2.959 5.291 21.738 0.5 15.39 ? H21 WHI 201 A 1 
HETATM 21 H H22 WHI . . . B 2 5.217 7.841 23.897 0.5 16.9 ? H22 WHI 201 A 1 
HETATM 22 H H26 WHI . . . B 2 9.024 8.13 17.814 0.5 15.33 ? H26 WHI 201 A 1 
HETATM 23 H H25 WHI . . . B 2 7.864 9.198 17.921 0.5 16.29 ? H25 WHI 201 A 1 
HETATM 24 H H20 WHI . . . B 2 3.954 6.106 19.813 0.5 16.46 ? H20 WHI 201 A 1 
HETATM 25 H H24 WHI . . . B 2 5.741 8.922 19.396 0.5 16.17 ? H24 WHI 201 A 1 
HETATM 26 H H23 WHI . . . B 2 5.4 7.551 18.691 0.5 16.35 ? H23 WHI 201 A 1 
HETATM 27 H H27 WHI . . . B 2 6.901 9.494 16.131 0.5 15.19 ? H27 WHI 201 A 1 
HETATM 28 H H28 WHI . . . B 2 5.471 6.473 13.948 0.5 15.99 ? H28 WHI 201 A 1 
HETATM 29 H H29 WHI . . . B 2 7.607 5.629 17.127 0.5 15.4 ? H29 WHI 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#