data_7G13 # _model_server_result.job_id bYtBa6mVUzVu4EDMZ7sujQ _model_server_result.datetime_utc '2024-11-27 17:46:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7g13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7G13 # _exptl.entry_id 7G13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7G13 _cell.length_a 32.141 _cell.length_b 53.024 _cell.length_c 72.169 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7G13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7G13 _atom_sites.fract_transf_matrix[1][1] 0.031113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WJH A 1 201 1 WJH L0R . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 1 DMS DMS . E 4 SO4 A 1 204 1 SO4 SO4 . F 5 HOH A 1 301 197 HOH HOH . F 5 HOH A 2 302 17 HOH HOH . F 5 HOH A 3 303 119 HOH HOH . F 5 HOH A 4 304 51 HOH HOH . F 5 HOH A 5 305 123 HOH HOH . F 5 HOH A 6 306 121 HOH HOH . F 5 HOH A 7 307 76 HOH HOH . F 5 HOH A 8 308 56 HOH HOH . F 5 HOH A 9 309 83 HOH HOH . F 5 HOH A 10 310 110 HOH HOH . F 5 HOH A 11 311 92 HOH HOH . F 5 HOH A 12 312 48 HOH HOH . F 5 HOH A 13 313 172 HOH HOH . F 5 HOH A 14 314 194 HOH HOH . F 5 HOH A 15 315 18 HOH HOH . F 5 HOH A 16 316 103 HOH HOH . F 5 HOH A 17 317 46 HOH HOH . F 5 HOH A 18 318 108 HOH HOH . F 5 HOH A 19 319 136 HOH HOH . F 5 HOH A 20 320 86 HOH HOH . F 5 HOH A 21 321 130 HOH HOH . F 5 HOH A 22 322 199 HOH HOH . F 5 HOH A 23 323 22 HOH HOH . F 5 HOH A 24 324 45 HOH HOH . F 5 HOH A 25 325 36 HOH HOH . F 5 HOH A 26 326 111 HOH HOH . F 5 HOH A 27 327 87 HOH HOH . F 5 HOH A 28 328 100 HOH HOH . F 5 HOH A 29 329 118 HOH HOH . F 5 HOH A 30 330 140 HOH HOH . F 5 HOH A 31 331 154 HOH HOH . F 5 HOH A 32 332 164 HOH HOH . F 5 HOH A 33 333 84 HOH HOH . F 5 HOH A 34 334 210 HOH HOH . F 5 HOH A 35 335 141 HOH HOH . F 5 HOH A 36 336 33 HOH HOH . F 5 HOH A 37 337 85 HOH HOH . F 5 HOH A 38 338 155 HOH HOH . F 5 HOH A 39 339 21 HOH HOH . F 5 HOH A 40 340 146 HOH HOH . F 5 HOH A 41 341 59 HOH HOH . F 5 HOH A 42 342 144 HOH HOH . F 5 HOH A 43 343 24 HOH HOH . F 5 HOH A 44 344 145 HOH HOH . F 5 HOH A 45 345 30 HOH HOH . F 5 HOH A 46 346 13 HOH HOH . F 5 HOH A 47 347 3 HOH HOH . F 5 HOH A 48 348 70 HOH HOH . F 5 HOH A 49 349 160 HOH HOH . F 5 HOH A 50 350 129 HOH HOH . F 5 HOH A 51 351 58 HOH HOH . F 5 HOH A 52 352 143 HOH HOH . F 5 HOH A 53 353 55 HOH HOH . F 5 HOH A 54 354 54 HOH HOH . F 5 HOH A 55 355 91 HOH HOH . F 5 HOH A 56 356 167 HOH HOH . F 5 HOH A 57 357 97 HOH HOH . F 5 HOH A 58 358 62 HOH HOH . F 5 HOH A 59 359 2 HOH HOH . F 5 HOH A 60 360 50 HOH HOH . F 5 HOH A 61 361 6 HOH HOH . F 5 HOH A 62 362 28 HOH HOH . F 5 HOH A 63 363 15 HOH HOH . F 5 HOH A 64 364 4 HOH HOH . F 5 HOH A 65 365 61 HOH HOH . F 5 HOH A 66 366 23 HOH HOH . F 5 HOH A 67 367 14 HOH HOH . F 5 HOH A 68 368 120 HOH HOH . F 5 HOH A 69 369 134 HOH HOH . F 5 HOH A 70 370 63 HOH HOH . F 5 HOH A 71 371 89 HOH HOH . F 5 HOH A 72 372 37 HOH HOH . F 5 HOH A 73 373 170 HOH HOH . F 5 HOH A 74 374 47 HOH HOH . F 5 HOH A 75 375 8 HOH HOH . F 5 HOH A 76 376 189 HOH HOH . F 5 HOH A 77 377 20 HOH HOH . F 5 HOH A 78 378 149 HOH HOH . F 5 HOH A 79 379 187 HOH HOH . F 5 HOH A 80 380 96 HOH HOH . F 5 HOH A 81 381 5 HOH HOH . F 5 HOH A 82 382 150 HOH HOH . F 5 HOH A 83 383 65 HOH HOH . F 5 HOH A 84 384 26 HOH HOH . F 5 HOH A 85 385 41 HOH HOH . F 5 HOH A 86 386 116 HOH HOH . F 5 HOH A 87 387 93 HOH HOH . F 5 HOH A 88 388 109 HOH HOH . F 5 HOH A 89 389 114 HOH HOH . F 5 HOH A 90 390 158 HOH HOH . F 5 HOH A 91 391 75 HOH HOH . F 5 HOH A 92 392 29 HOH HOH . F 5 HOH A 93 393 49 HOH HOH . F 5 HOH A 94 394 12 HOH HOH . F 5 HOH A 95 395 113 HOH HOH . F 5 HOH A 96 396 43 HOH HOH . F 5 HOH A 97 397 157 HOH HOH . F 5 HOH A 98 398 57 HOH HOH . F 5 HOH A 99 399 166 HOH HOH . F 5 HOH A 100 400 1 HOH HOH . F 5 HOH A 101 401 44 HOH HOH . F 5 HOH A 102 402 73 HOH HOH . F 5 HOH A 103 403 169 HOH HOH . F 5 HOH A 104 404 79 HOH HOH . F 5 HOH A 105 405 69 HOH HOH . F 5 HOH A 106 406 25 HOH HOH . F 5 HOH A 107 407 67 HOH HOH . F 5 HOH A 108 408 133 HOH HOH . F 5 HOH A 109 409 40 HOH HOH . F 5 HOH A 110 410 142 HOH HOH . F 5 HOH A 111 411 107 HOH HOH . F 5 HOH A 112 412 60 HOH HOH . F 5 HOH A 113 413 101 HOH HOH . F 5 HOH A 114 414 165 HOH HOH . F 5 HOH A 115 415 174 HOH HOH . F 5 HOH A 116 416 82 HOH HOH . F 5 HOH A 117 417 88 HOH HOH . F 5 HOH A 118 418 10 HOH HOH . F 5 HOH A 119 419 95 HOH HOH . F 5 HOH A 120 420 16 HOH HOH . F 5 HOH A 121 421 35 HOH HOH . F 5 HOH A 122 422 27 HOH HOH . F 5 HOH A 123 423 39 HOH HOH . F 5 HOH A 124 424 11 HOH HOH . F 5 HOH A 125 425 81 HOH HOH . F 5 HOH A 126 426 74 HOH HOH . F 5 HOH A 127 427 32 HOH HOH . F 5 HOH A 128 428 77 HOH HOH . F 5 HOH A 129 429 151 HOH HOH . F 5 HOH A 130 430 19 HOH HOH . F 5 HOH A 131 431 72 HOH HOH . F 5 HOH A 132 432 208 HOH HOH . F 5 HOH A 133 433 80 HOH HOH . F 5 HOH A 134 434 90 HOH HOH . F 5 HOH A 135 435 138 HOH HOH . F 5 HOH A 136 436 117 HOH HOH . F 5 HOH A 137 437 94 HOH HOH . F 5 HOH A 138 438 122 HOH HOH . F 5 HOH A 139 439 9 HOH HOH . F 5 HOH A 140 440 52 HOH HOH . F 5 HOH A 141 441 161 HOH HOH . F 5 HOH A 142 442 98 HOH HOH . F 5 HOH A 143 443 104 HOH HOH . F 5 HOH A 144 444 203 HOH HOH . F 5 HOH A 145 445 64 HOH HOH . F 5 HOH A 146 446 7 HOH HOH . F 5 HOH A 147 447 106 HOH HOH . F 5 HOH A 148 448 171 HOH HOH . F 5 HOH A 149 449 124 HOH HOH . F 5 HOH A 150 450 192 HOH HOH . F 5 HOH A 151 451 148 HOH HOH . F 5 HOH A 152 452 102 HOH HOH . F 5 HOH A 153 453 188 HOH HOH . F 5 HOH A 154 454 127 HOH HOH . F 5 HOH A 155 455 132 HOH HOH . F 5 HOH A 156 456 38 HOH HOH . F 5 HOH A 157 457 168 HOH HOH . F 5 HOH A 158 458 162 HOH HOH . F 5 HOH A 159 459 115 HOH HOH . F 5 HOH A 160 460 152 HOH HOH . F 5 HOH A 161 461 135 HOH HOH . F 5 HOH A 162 462 163 HOH HOH . F 5 HOH A 163 463 105 HOH HOH . F 5 HOH A 164 464 34 HOH HOH . F 5 HOH A 165 465 53 HOH HOH . F 5 HOH A 166 466 137 HOH HOH . F 5 HOH A 167 467 211 HOH HOH . F 5 HOH A 168 468 153 HOH HOH . F 5 HOH A 169 469 159 HOH HOH . F 5 HOH A 170 470 179 HOH HOH . F 5 HOH A 171 471 202 HOH HOH . F 5 HOH A 172 472 68 HOH HOH . F 5 HOH A 173 473 206 HOH HOH . F 5 HOH A 174 474 131 HOH HOH . F 5 HOH A 175 475 156 HOH HOH . F 5 HOH A 176 476 185 HOH HOH . F 5 HOH A 177 477 147 HOH HOH . F 5 HOH A 178 478 178 HOH HOH . F 5 HOH A 179 479 191 HOH HOH . F 5 HOH A 180 480 126 HOH HOH . F 5 HOH A 181 481 177 HOH HOH . F 5 HOH A 182 482 196 HOH HOH . F 5 HOH A 183 483 112 HOH HOH . F 5 HOH A 184 484 207 HOH HOH . F 5 HOH A 185 485 125 HOH HOH . F 5 HOH A 186 486 176 HOH HOH . F 5 HOH A 187 487 42 HOH HOH . F 5 HOH A 188 488 180 HOH HOH . F 5 HOH A 189 489 190 HOH HOH . F 5 HOH A 190 490 66 HOH HOH . F 5 HOH A 191 491 200 HOH HOH . F 5 HOH A 192 492 31 HOH HOH . F 5 HOH A 193 493 186 HOH HOH . F 5 HOH A 194 494 78 HOH HOH . F 5 HOH A 195 495 71 HOH HOH . F 5 HOH A 196 496 99 HOH HOH . F 5 HOH A 197 497 209 HOH HOH . F 5 HOH A 198 498 181 HOH HOH . F 5 HOH A 199 499 201 HOH HOH . F 5 HOH A 200 500 195 HOH HOH . F 5 HOH A 201 501 205 HOH HOH . F 5 HOH A 202 502 204 HOH HOH . F 5 HOH A 203 503 193 HOH HOH . F 5 HOH A 204 504 128 HOH HOH . F 5 HOH A 205 505 198 HOH HOH . F 5 HOH A 206 506 183 HOH HOH . F 5 HOH A 207 507 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -4.773 1.919 -21.946 0.5 14 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 3 -5.037 3.001 -22.941 0.5 18.18 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 3 -3.417 2.353 -21.053 0.5 13.88 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 3 -5.812 2.259 -20.612 0.5 17.32 ? C2 DMS 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #