data_7G1D # _model_server_result.job_id PqOhaXTeFDVq9E-IBJcOFg _model_server_result.datetime_utc '2024-10-15 15:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7g1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7G1D # _exptl.entry_id 7G1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.354 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7G1D _cell.length_a 32.555 _cell.length_b 53.76 _cell.length_c 75.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7G1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H16 N2 O2 S' _chem_comp.formula_weight 276.354 _chem_comp.id WNL _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 WNL doub 393 n n C02 C03 WNL sing 394 n n C03 N04 WNL sing 395 n n N04 C05 WNL sing 396 n n C01 N06 WNL sing 397 n n C05 N06 WNL sing 398 n n C02 C07 WNL sing 399 n n C07 C08 WNL sing 400 n n C03 O09 WNL doub 401 n n C05 S11 WNL doub 402 n n C01 C12 WNL sing 403 n n C12 C13 WNL doub 404 n y C13 C14 WNL sing 405 n y C14 C15 WNL doub 406 n y C15 C16 WNL sing 407 n y C12 C17 WNL sing 408 n y C16 C17 WNL doub 409 n y C16 O18 WNL sing 410 n n O18 C19 WNL sing 411 n n C07 H22 WNL sing 412 n n C07 H21 WNL sing 413 n n C13 H29 WNL sing 414 n n C15 H31 WNL sing 415 n n C17 H32 WNL sing 416 n n C19 H35 WNL sing 417 n n C19 H34 WNL sing 418 n n C19 H33 WNL sing 419 n n C31 H1 WNL sing 420 n n C31 H2 WNL sing 421 n n C31 H3 WNL sing 422 n n N06 H5 WNL sing 423 n n C08 H25 WNL sing 424 n n C08 H24 WNL sing 425 n n C08 H23 WNL sing 426 n n C14 H30 WNL sing 427 n n N04 C31 WNL sing 428 n n # _atom_sites.entry_id 7G1D _atom_sites.fract_transf_matrix[1][1] 0.030717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 1 DMS DMS . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 WNL A 1 204 1 WNL L0R . F 5 FMT A 1 205 1 FMT FMT . G 6 HOH A 1 301 171 HOH HOH . G 6 HOH A 2 302 167 HOH HOH . G 6 HOH A 3 303 168 HOH HOH . G 6 HOH A 4 304 63 HOH HOH . G 6 HOH A 5 305 103 HOH HOH . G 6 HOH A 6 306 48 HOH HOH . G 6 HOH A 7 307 114 HOH HOH . G 6 HOH A 8 308 53 HOH HOH . G 6 HOH A 9 309 51 HOH HOH . G 6 HOH A 10 310 59 HOH HOH . G 6 HOH A 11 311 25 HOH HOH . G 6 HOH A 12 312 82 HOH HOH . G 6 HOH A 13 313 111 HOH HOH . G 6 HOH A 14 314 146 HOH HOH . G 6 HOH A 15 315 27 HOH HOH . G 6 HOH A 16 316 113 HOH HOH . G 6 HOH A 17 317 26 HOH HOH . G 6 HOH A 18 318 129 HOH HOH . G 6 HOH A 19 319 38 HOH HOH . G 6 HOH A 20 320 61 HOH HOH . G 6 HOH A 21 321 14 HOH HOH . G 6 HOH A 22 322 160 HOH HOH . G 6 HOH A 23 323 145 HOH HOH . G 6 HOH A 24 324 5 HOH HOH . G 6 HOH A 25 325 116 HOH HOH . G 6 HOH A 26 326 159 HOH HOH . G 6 HOH A 27 327 6 HOH HOH . G 6 HOH A 28 328 165 HOH HOH . G 6 HOH A 29 329 50 HOH HOH . G 6 HOH A 30 330 73 HOH HOH . G 6 HOH A 31 331 164 HOH HOH . G 6 HOH A 32 332 118 HOH HOH . G 6 HOH A 33 333 69 HOH HOH . G 6 HOH A 34 334 89 HOH HOH . G 6 HOH A 35 335 161 HOH HOH . G 6 HOH A 36 336 60 HOH HOH . G 6 HOH A 37 337 106 HOH HOH . G 6 HOH A 38 338 86 HOH HOH . G 6 HOH A 39 339 136 HOH HOH . G 6 HOH A 40 340 45 HOH HOH . G 6 HOH A 41 341 3 HOH HOH . G 6 HOH A 42 342 105 HOH HOH . G 6 HOH A 43 343 75 HOH HOH . G 6 HOH A 44 344 78 HOH HOH . G 6 HOH A 45 345 65 HOH HOH . G 6 HOH A 46 346 29 HOH HOH . G 6 HOH A 47 347 9 HOH HOH . G 6 HOH A 48 348 10 HOH HOH . G 6 HOH A 49 349 138 HOH HOH . G 6 HOH A 50 350 7 HOH HOH . G 6 HOH A 51 351 35 HOH HOH . G 6 HOH A 52 352 133 HOH HOH . G 6 HOH A 53 353 16 HOH HOH . G 6 HOH A 54 354 74 HOH HOH . G 6 HOH A 55 355 15 HOH HOH . G 6 HOH A 56 356 119 HOH HOH . G 6 HOH A 57 357 4 HOH HOH . G 6 HOH A 58 358 92 HOH HOH . G 6 HOH A 59 359 36 HOH HOH . G 6 HOH A 60 360 43 HOH HOH . G 6 HOH A 61 361 28 HOH HOH . G 6 HOH A 62 362 22 HOH HOH . G 6 HOH A 63 363 132 HOH HOH . G 6 HOH A 64 364 102 HOH HOH . G 6 HOH A 65 365 87 HOH HOH . G 6 HOH A 66 366 169 HOH HOH . G 6 HOH A 67 367 21 HOH HOH . G 6 HOH A 68 368 112 HOH HOH . G 6 HOH A 69 369 23 HOH HOH . G 6 HOH A 70 370 1 HOH HOH . G 6 HOH A 71 371 11 HOH HOH . G 6 HOH A 72 372 30 HOH HOH . G 6 HOH A 73 373 134 HOH HOH . G 6 HOH A 74 374 95 HOH HOH . G 6 HOH A 75 375 72 HOH HOH . G 6 HOH A 76 376 31 HOH HOH . G 6 HOH A 77 377 99 HOH HOH . G 6 HOH A 78 378 24 HOH HOH . G 6 HOH A 79 379 46 HOH HOH . G 6 HOH A 80 380 90 HOH HOH . G 6 HOH A 81 381 37 HOH HOH . G 6 HOH A 82 382 2 HOH HOH . G 6 HOH A 83 383 93 HOH HOH . G 6 HOH A 84 384 70 HOH HOH . G 6 HOH A 85 385 55 HOH HOH . G 6 HOH A 86 386 139 HOH HOH . G 6 HOH A 87 387 64 HOH HOH . G 6 HOH A 88 388 17 HOH HOH . G 6 HOH A 89 389 20 HOH HOH . G 6 HOH A 90 390 120 HOH HOH . G 6 HOH A 91 391 33 HOH HOH . G 6 HOH A 92 392 57 HOH HOH . G 6 HOH A 93 393 147 HOH HOH . G 6 HOH A 94 394 8 HOH HOH . G 6 HOH A 95 395 12 HOH HOH . G 6 HOH A 96 396 80 HOH HOH . G 6 HOH A 97 397 104 HOH HOH . G 6 HOH A 98 398 34 HOH HOH . G 6 HOH A 99 399 128 HOH HOH . G 6 HOH A 100 400 62 HOH HOH . G 6 HOH A 101 401 94 HOH HOH . G 6 HOH A 102 402 40 HOH HOH . G 6 HOH A 103 403 77 HOH HOH . G 6 HOH A 104 404 142 HOH HOH . G 6 HOH A 105 405 127 HOH HOH . G 6 HOH A 106 406 47 HOH HOH . G 6 HOH A 107 407 42 HOH HOH . G 6 HOH A 108 408 107 HOH HOH . G 6 HOH A 109 409 52 HOH HOH . G 6 HOH A 110 410 44 HOH HOH . G 6 HOH A 111 411 71 HOH HOH . G 6 HOH A 112 412 66 HOH HOH . G 6 HOH A 113 413 18 HOH HOH . G 6 HOH A 114 414 126 HOH HOH . G 6 HOH A 115 415 32 HOH HOH . G 6 HOH A 116 416 110 HOH HOH . G 6 HOH A 117 417 88 HOH HOH . G 6 HOH A 118 418 96 HOH HOH . G 6 HOH A 119 419 101 HOH HOH . G 6 HOH A 120 420 122 HOH HOH . G 6 HOH A 121 421 39 HOH HOH . G 6 HOH A 122 422 98 HOH HOH . G 6 HOH A 123 423 148 HOH HOH . G 6 HOH A 124 424 67 HOH HOH . G 6 HOH A 125 425 58 HOH HOH . G 6 HOH A 126 426 143 HOH HOH . G 6 HOH A 127 427 149 HOH HOH . G 6 HOH A 128 428 140 HOH HOH . G 6 HOH A 129 429 172 HOH HOH . G 6 HOH A 130 430 170 HOH HOH . G 6 HOH A 131 431 83 HOH HOH . G 6 HOH A 132 432 117 HOH HOH . G 6 HOH A 133 433 141 HOH HOH . G 6 HOH A 134 434 162 HOH HOH . G 6 HOH A 135 435 150 HOH HOH . G 6 HOH A 136 436 121 HOH HOH . G 6 HOH A 137 437 123 HOH HOH . G 6 HOH A 138 438 76 HOH HOH . G 6 HOH A 139 439 137 HOH HOH . G 6 HOH A 140 440 135 HOH HOH . G 6 HOH A 141 441 41 HOH HOH . G 6 HOH A 142 442 157 HOH HOH . G 6 HOH A 143 443 124 HOH HOH . G 6 HOH A 144 444 151 HOH HOH . G 6 HOH A 145 445 91 HOH HOH . G 6 HOH A 146 446 155 HOH HOH . G 6 HOH A 147 447 68 HOH HOH . G 6 HOH A 148 448 79 HOH HOH . G 6 HOH A 149 449 56 HOH HOH . G 6 HOH A 150 450 166 HOH HOH . G 6 HOH A 151 451 100 HOH HOH . G 6 HOH A 152 452 153 HOH HOH . G 6 HOH A 153 453 84 HOH HOH . G 6 HOH A 154 454 144 HOH HOH . G 6 HOH A 155 455 173 HOH HOH . G 6 HOH A 156 456 152 HOH HOH . G 6 HOH A 157 457 81 HOH HOH . G 6 HOH A 158 458 156 HOH HOH . G 6 HOH A 159 459 19 HOH HOH . G 6 HOH A 160 460 85 HOH HOH . G 6 HOH A 161 461 130 HOH HOH . G 6 HOH A 162 462 54 HOH HOH . G 6 HOH A 163 463 163 HOH HOH . G 6 HOH A 164 464 109 HOH HOH . G 6 HOH A 165 465 108 HOH HOH . G 6 HOH A 166 466 125 HOH HOH . G 6 HOH A 167 467 158 HOH HOH . G 6 HOH A 168 468 115 HOH HOH . G 6 HOH A 169 469 154 HOH HOH . G 6 HOH A 170 470 97 HOH HOH . G 6 HOH A 171 471 49 HOH HOH . G 6 HOH A 172 472 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WNL . . . E 4 4.527 6.099 18.175 1 15.64 ? C01 WNL 204 A 1 HETATM 2 C C02 WNL . . . E 4 5.129 7.114 18.884 1 16.6 ? C02 WNL 204 A 1 HETATM 3 C C05 WNL . . . E 4 6.396 5.87 16.613 1 15.58 ? C05 WNL 204 A 1 HETATM 4 C C07 WNL . . . E 4 4.509 7.8 20.084 1 18.85 ? C07 WNL 204 A 1 HETATM 5 C C13 WNL . . . E 4 3.076 4.423 19.229 1 17 ? C13 WNL 204 A 1 HETATM 6 C C15 WNL . . . E 4 0.692 4.535 18.969 1 17.12 ? C15 WNL 204 A 1 HETATM 7 C C16 WNL . . . E 4 0.81 5.705 18.201 1 15.38 ? C16 WNL 204 A 1 HETATM 8 C C17 WNL . . . E 4 2.067 6.23 17.948 1 15.1 ? C17 WNL 204 A 1 HETATM 9 C C19 WNL . . . E 4 -0.339 7.343 16.924 1 17.92 ? C19 WNL 204 A 1 HETATM 10 C C03 WNL . . . E 4 6.45 7.574 18.511 1 17.72 ? C03 WNL 204 A 1 HETATM 11 N N04 WNL . . . E 4 7.019 6.965 17.366 1 18.15 ? N04 WNL 204 A 1 HETATM 12 C C31 WNL . . . E 4 8.261 7.478 16.857 1 21.73 ? C31 WNL 204 A 1 HETATM 13 N N06 WNL . . . E 4 5.129 5.469 17.03 1 16.68 ? N06 WNL 204 A 1 HETATM 14 C C08 WNL . . . E 4 5.031 7.255 21.423 1 22.1 ? C08 WNL 204 A 1 HETATM 15 O O09 WNL . . . E 4 7.125 8.515 19.076 1 20.92 ? O09 WNL 204 A 1 HETATM 16 S S11 WNL . . . E 4 7.087 5.204 15.304 1 18.21 ? S11 WNL 204 A 1 HETATM 17 C C12 WNL . . . E 4 3.187 5.606 18.468 1 16.39 ? C12 WNL 204 A 1 HETATM 18 C C14 WNL . . . E 4 1.826 3.891 19.499 1 16.02 ? C14 WNL 204 A 1 HETATM 19 O O18 WNL . . . E 4 -0.391 6.234 17.772 1 18.45 ? O18 WNL 204 A 1 HETATM 20 H H22 WNL . . . E 4 3.439 7.669 20.054 1 19.15 ? H22 WNL 204 A 1 HETATM 21 H H21 WNL . . . E 4 4.711 8.861 20.041 1 19.04 ? H21 WNL 204 A 1 HETATM 22 H H29 WNL . . . E 4 3.947 3.951 19.602 1 17.86 ? H29 WNL 204 A 1 HETATM 23 H H31 WNL . . . E 4 -0.268 4.146 19.18 1 16.42 ? H31 WNL 204 A 1 HETATM 24 H H32 WNL . . . E 4 2.195 7.103 17.364 1 16.05 ? H32 WNL 204 A 1 HETATM 25 H H35 WNL . . . E 4 -1.328 7.567 16.553 1 17.79 ? H35 WNL 204 A 1 HETATM 26 H H34 WNL . . . E 4 0.304 7.117 16.085 1 18.11 ? H34 WNL 204 A 1 HETATM 27 H H33 WNL . . . E 4 0.047 8.199 17.461 1 19.42 ? H33 WNL 204 A 1 HETATM 28 H H1 WNL . . . E 4 8.266 8.557 16.944 1 21.55 ? H1 WNL 204 A 1 HETATM 29 H H2 WNL . . . E 4 9.068 7.071 17.441 1 22.61 ? H2 WNL 204 A 1 HETATM 30 H H3 WNL . . . E 4 8.398 7.219 15.817 1 21.14 ? H3 WNL 204 A 1 HETATM 31 H H25 WNL . . . E 4 4.34 6.518 21.81 1 22.08 ? H25 WNL 204 A 1 HETATM 32 H H24 WNL . . . E 4 5.118 8.069 22.131 1 20.69 ? H24 WNL 204 A 1 HETATM 33 H H23 WNL . . . E 4 6.001 6.801 21.279 1 20.15 ? H23 WNL 204 A 1 HETATM 34 H H30 WNL . . . E 4 1.724 3.016 20.077 1 16.25 ? H30 WNL 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #