data_7G97 # _model_server_result.job_id 7H75k63NSPgEzu37o30u4w _model_server_result.datetime_utc '2024-12-22 01:35:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7g97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7G97 # _exptl.entry_id 7G97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINOMETHYL-PYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7G97 _cell.length_a 71.226 _cell.length_b 71.226 _cell.length_c 196.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7G97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 107 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CM _struct_conn.ptnr2_label_comp_id APY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id APY _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.86 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 N2' _chem_comp.formula_weight 108.141 _chem_comp.id APY _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINOMETHYL-PYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CM APY sing 13 n n N HN1 APY sing 14 n n N HN2 APY sing 15 n n CM C2 APY sing 16 n n CM HM1 APY sing 17 n n CM HM2 APY sing 18 n n C2 C3 APY sing 19 n y C2 N1 APY doub 20 n y C3 C4 APY doub 21 n y C3 H3 APY sing 22 n n C4 C5 APY sing 23 n y C4 H4 APY sing 24 n n C5 C6 APY doub 25 n y C5 H5 APY sing 26 n n C6 N1 APY sing 27 n y C6 H6 APY sing 28 n n # _atom_sites.entry_id 7G97 _atom_sites.fract_transf_matrix[1][1] 0.01404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 APY A 1 201 201 APY LIG . D 4 DMS A 1 202 1 DMS DMS . E 4 DMS A 1 203 3 DMS DMS . F 5 FMT A 1 204 1 FMT FMT . G 4 DMS B 1 501 2 DMS DMS . H 6 HOH A 1 301 19 HOH HOH . H 6 HOH A 2 302 23 HOH HOH . H 6 HOH A 3 303 6 HOH HOH . H 6 HOH A 4 304 53 HOH HOH . H 6 HOH A 5 305 55 HOH HOH . H 6 HOH A 6 306 32 HOH HOH . H 6 HOH A 7 307 26 HOH HOH . H 6 HOH A 8 308 2 HOH HOH . H 6 HOH A 9 309 68 HOH HOH . H 6 HOH A 10 310 24 HOH HOH . H 6 HOH A 11 311 39 HOH HOH . H 6 HOH A 12 312 66 HOH HOH . H 6 HOH A 13 313 10 HOH HOH . H 6 HOH A 14 314 8 HOH HOH . H 6 HOH A 15 315 46 HOH HOH . H 6 HOH A 16 316 40 HOH HOH . H 6 HOH A 17 317 9 HOH HOH . H 6 HOH A 18 318 63 HOH HOH . H 6 HOH A 19 319 58 HOH HOH . H 6 HOH A 20 320 21 HOH HOH . H 6 HOH A 21 321 69 HOH HOH . H 6 HOH A 22 322 38 HOH HOH . H 6 HOH A 23 323 81 HOH HOH . H 6 HOH A 24 324 15 HOH HOH . H 6 HOH A 25 325 49 HOH HOH . H 6 HOH A 26 326 79 HOH HOH . H 6 HOH A 27 327 76 HOH HOH . H 6 HOH A 28 328 71 HOH HOH . I 6 HOH B 1 601 44 HOH HOH . I 6 HOH B 2 602 30 HOH HOH . I 6 HOH B 3 603 11 HOH HOH . I 6 HOH B 4 604 86 HOH HOH . I 6 HOH B 5 605 16 HOH HOH . I 6 HOH B 6 606 72 HOH HOH . I 6 HOH B 7 607 67 HOH HOH . I 6 HOH B 8 608 20 HOH HOH . I 6 HOH B 9 609 17 HOH HOH . I 6 HOH B 10 610 59 HOH HOH . I 6 HOH B 11 611 84 HOH HOH . I 6 HOH B 12 612 34 HOH HOH . I 6 HOH B 13 613 37 HOH HOH . I 6 HOH B 14 614 7 HOH HOH . I 6 HOH B 15 615 52 HOH HOH . I 6 HOH B 16 616 80 HOH HOH . I 6 HOH B 17 617 42 HOH HOH . I 6 HOH B 18 618 13 HOH HOH . I 6 HOH B 19 619 57 HOH HOH . I 6 HOH B 20 620 18 HOH HOH . I 6 HOH B 21 621 4 HOH HOH . I 6 HOH B 22 622 45 HOH HOH . I 6 HOH B 23 623 5 HOH HOH . I 6 HOH B 24 624 62 HOH HOH . I 6 HOH B 25 625 51 HOH HOH . I 6 HOH B 26 626 27 HOH HOH . I 6 HOH B 27 627 29 HOH HOH . I 6 HOH B 28 628 35 HOH HOH . I 6 HOH B 29 629 48 HOH HOH . I 6 HOH B 30 630 50 HOH HOH . I 6 HOH B 31 631 1 HOH HOH . I 6 HOH B 32 632 12 HOH HOH . I 6 HOH B 33 633 61 HOH HOH . I 6 HOH B 34 634 73 HOH HOH . I 6 HOH B 35 635 56 HOH HOH . I 6 HOH B 36 636 47 HOH HOH . I 6 HOH B 37 637 77 HOH HOH . I 6 HOH B 38 638 36 HOH HOH . I 6 HOH B 39 639 64 HOH HOH . I 6 HOH B 40 640 22 HOH HOH . I 6 HOH B 41 641 31 HOH HOH . I 6 HOH B 42 642 54 HOH HOH . I 6 HOH B 43 643 25 HOH HOH . I 6 HOH B 44 644 43 HOH HOH . I 6 HOH B 45 645 75 HOH HOH . I 6 HOH B 46 646 60 HOH HOH . I 6 HOH B 47 647 3 HOH HOH . I 6 HOH B 48 648 14 HOH HOH . I 6 HOH B 49 649 33 HOH HOH . I 6 HOH B 50 650 70 HOH HOH . I 6 HOH B 51 651 87 HOH HOH . I 6 HOH B 52 652 83 HOH HOH . I 6 HOH B 53 653 85 HOH HOH . I 6 HOH B 54 654 78 HOH HOH . I 6 HOH B 55 655 28 HOH HOH . I 6 HOH B 56 656 74 HOH HOH . I 6 HOH B 57 657 65 HOH HOH . I 6 HOH B 58 658 82 HOH HOH . I 6 HOH B 59 659 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N APY . . . C 3 15.832 -44.907 7.715 1 50.25 ? N APY 201 A 1 HETATM 2 C CM APY . . . C 3 16.991 -44.513 8.223 1 57.4 ? CM APY 201 A 1 HETATM 3 C C2 APY . . . C 3 17.716 -45.7 8.704 1 61.1 ? C2 APY 201 A 1 HETATM 4 C C3 APY . . . C 3 18.879 -45.606 9.46 1 60.35 ? C3 APY 201 A 1 HETATM 5 C C4 APY . . . C 3 19.485 -46.778 9.871 1 68.03 ? C4 APY 201 A 1 HETATM 6 C C5 APY . . . C 3 18.907 -47.988 9.545 1 60.06 ? C5 APY 201 A 1 HETATM 7 C C6 APY . . . C 3 17.738 -47.99 8.826 1 52.29 ? C6 APY 201 A 1 HETATM 8 N N1 APY . . . C 3 17.135 -46.881 8.399 1 54.16 ? N1 APY 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #