data_7G9D # _model_server_result.job_id 0F05hyx0QdCje3m-U4m81A _model_server_result.datetime_utc '2024-10-11 06:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7g9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":505}' # _entry.id 7G9D # _exptl.entry_id 7G9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7G9D _cell.length_a 70.693 _cell.length_b 70.693 _cell.length_c 195.486 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7G9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 103 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 306 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id T7Y _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id T7Y _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.8 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7G9D _atom_sites.fract_transf_matrix[1][1] 0.014146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS A 1 201 1 DMS DMS . D 4 FMT A 1 202 1 FMT FMT . E 4 FMT A 1 203 4 FMT FMT . F 4 FMT A 1 204 5 FMT FMT . G 4 FMT A 1 205 10 FMT FMT . H 4 FMT A 1 206 13 FMT FMT . I 5 T7Y B 1 501 501 T7Y LIG . J 3 DMS B 1 502 3 DMS DMS . K 4 FMT B 1 503 3 FMT FMT . L 4 FMT B 1 504 6 FMT FMT . M 4 FMT B 1 505 7 FMT FMT . N 4 FMT B 1 506 8 FMT FMT . O 6 HOH A 1 301 178 HOH HOH . O 6 HOH A 2 302 259 HOH HOH . O 6 HOH A 3 303 5 HOH HOH . O 6 HOH A 4 304 60 HOH HOH . O 6 HOH A 5 305 103 HOH HOH . O 6 HOH A 6 306 164 HOH HOH . O 6 HOH A 7 307 40 HOH HOH . O 6 HOH A 8 308 386 HOH HOH . O 6 HOH A 9 309 19 HOH HOH . O 6 HOH A 10 310 228 HOH HOH . O 6 HOH A 11 311 123 HOH HOH . O 6 HOH A 12 312 52 HOH HOH . O 6 HOH A 13 313 8 HOH HOH . O 6 HOH A 14 314 211 HOH HOH . O 6 HOH A 15 315 291 HOH HOH . O 6 HOH A 16 316 318 HOH HOH . O 6 HOH A 17 317 299 HOH HOH . O 6 HOH A 18 318 423 HOH HOH . O 6 HOH A 19 319 30 HOH HOH . O 6 HOH A 20 320 165 HOH HOH . O 6 HOH A 21 321 137 HOH HOH . O 6 HOH A 22 322 54 HOH HOH . O 6 HOH A 23 323 296 HOH HOH . O 6 HOH A 24 324 17 HOH HOH . O 6 HOH A 25 325 72 HOH HOH . O 6 HOH A 26 326 324 HOH HOH . O 6 HOH A 27 327 206 HOH HOH . O 6 HOH A 28 328 34 HOH HOH . O 6 HOH A 29 329 148 HOH HOH . O 6 HOH A 30 330 9 HOH HOH . O 6 HOH A 31 331 99 HOH HOH . O 6 HOH A 32 332 403 HOH HOH . O 6 HOH A 33 333 49 HOH HOH . O 6 HOH A 34 334 46 HOH HOH . O 6 HOH A 35 335 183 HOH HOH . O 6 HOH A 36 336 435 HOH HOH . O 6 HOH A 37 337 181 HOH HOH . O 6 HOH A 38 338 194 HOH HOH . O 6 HOH A 39 339 161 HOH HOH . O 6 HOH A 40 340 128 HOH HOH . O 6 HOH A 41 341 77 HOH HOH . O 6 HOH A 42 342 144 HOH HOH . O 6 HOH A 43 343 302 HOH HOH . O 6 HOH A 44 344 348 HOH HOH . O 6 HOH A 45 345 89 HOH HOH . O 6 HOH A 46 346 217 HOH HOH . O 6 HOH A 47 347 356 HOH HOH . O 6 HOH A 48 348 57 HOH HOH . O 6 HOH A 49 349 199 HOH HOH . O 6 HOH A 50 350 76 HOH HOH . O 6 HOH A 51 351 275 HOH HOH . O 6 HOH A 52 352 255 HOH HOH . O 6 HOH A 53 353 433 HOH HOH . O 6 HOH A 54 354 300 HOH HOH . O 6 HOH A 55 355 239 HOH HOH . O 6 HOH A 56 356 87 HOH HOH . O 6 HOH A 57 357 396 HOH HOH . O 6 HOH A 58 358 432 HOH HOH . O 6 HOH A 59 359 282 HOH HOH . O 6 HOH A 60 360 218 HOH HOH . O 6 HOH A 61 361 235 HOH HOH . O 6 HOH A 62 362 141 HOH HOH . O 6 HOH A 63 363 355 HOH HOH . O 6 HOH A 64 364 445 HOH HOH . O 6 HOH A 65 365 402 HOH HOH . O 6 HOH A 66 366 265 HOH HOH . O 6 HOH A 67 367 281 HOH HOH . O 6 HOH A 68 368 342 HOH HOH . O 6 HOH A 69 369 192 HOH HOH . O 6 HOH A 70 370 149 HOH HOH . O 6 HOH A 71 371 313 HOH HOH . O 6 HOH A 72 372 335 HOH HOH . O 6 HOH A 73 373 204 HOH HOH . O 6 HOH A 74 374 249 HOH HOH . O 6 HOH A 75 375 184 HOH HOH . P 6 HOH B 1 601 312 HOH HOH . P 6 HOH B 2 602 258 HOH HOH . P 6 HOH B 3 603 59 HOH HOH . P 6 HOH B 4 604 24 HOH HOH . P 6 HOH B 5 605 33 HOH HOH . P 6 HOH B 6 606 2 HOH HOH . P 6 HOH B 7 607 373 HOH HOH . P 6 HOH B 8 608 23 HOH HOH . P 6 HOH B 9 609 166 HOH HOH . P 6 HOH B 10 610 92 HOH HOH . P 6 HOH B 11 611 84 HOH HOH . P 6 HOH B 12 612 16 HOH HOH . P 6 HOH B 13 613 390 HOH HOH . P 6 HOH B 14 614 43 HOH HOH . P 6 HOH B 15 615 295 HOH HOH . P 6 HOH B 16 616 377 HOH HOH . P 6 HOH B 17 617 88 HOH HOH . P 6 HOH B 18 618 371 HOH HOH . P 6 HOH B 19 619 277 HOH HOH . P 6 HOH B 20 620 121 HOH HOH . P 6 HOH B 21 621 222 HOH HOH . P 6 HOH B 22 622 147 HOH HOH . P 6 HOH B 23 623 168 HOH HOH . P 6 HOH B 24 624 6 HOH HOH . P 6 HOH B 25 625 58 HOH HOH . P 6 HOH B 26 626 18 HOH HOH . P 6 HOH B 27 627 106 HOH HOH . P 6 HOH B 28 628 220 HOH HOH . P 6 HOH B 29 629 96 HOH HOH . P 6 HOH B 30 630 367 HOH HOH . P 6 HOH B 31 631 102 HOH HOH . P 6 HOH B 32 632 264 HOH HOH . P 6 HOH B 33 633 56 HOH HOH . P 6 HOH B 34 634 39 HOH HOH . P 6 HOH B 35 635 306 HOH HOH . P 6 HOH B 36 636 392 HOH HOH . P 6 HOH B 37 637 53 HOH HOH . P 6 HOH B 38 638 78 HOH HOH . P 6 HOH B 39 639 66 HOH HOH . P 6 HOH B 40 640 310 HOH HOH . P 6 HOH B 41 641 131 HOH HOH . P 6 HOH B 42 642 15 HOH HOH . P 6 HOH B 43 643 431 HOH HOH . P 6 HOH B 44 644 162 HOH HOH . P 6 HOH B 45 645 362 HOH HOH . P 6 HOH B 46 646 376 HOH HOH . P 6 HOH B 47 647 337 HOH HOH . P 6 HOH B 48 648 226 HOH HOH . P 6 HOH B 49 649 394 HOH HOH . P 6 HOH B 50 650 261 HOH HOH . P 6 HOH B 51 651 81 HOH HOH . P 6 HOH B 52 652 208 HOH HOH . P 6 HOH B 53 653 61 HOH HOH . P 6 HOH B 54 654 64 HOH HOH . P 6 HOH B 55 655 201 HOH HOH . P 6 HOH B 56 656 32 HOH HOH . P 6 HOH B 57 657 4 HOH HOH . P 6 HOH B 58 658 327 HOH HOH . P 6 HOH B 59 659 120 HOH HOH . P 6 HOH B 60 660 174 HOH HOH . P 6 HOH B 61 661 35 HOH HOH . P 6 HOH B 62 662 186 HOH HOH . P 6 HOH B 63 663 94 HOH HOH . P 6 HOH B 64 664 400 HOH HOH . P 6 HOH B 65 665 418 HOH HOH . P 6 HOH B 66 666 283 HOH HOH . P 6 HOH B 67 667 31 HOH HOH . P 6 HOH B 68 668 63 HOH HOH . P 6 HOH B 69 669 169 HOH HOH . P 6 HOH B 70 670 100 HOH HOH . P 6 HOH B 71 671 180 HOH HOH . P 6 HOH B 72 672 189 HOH HOH . P 6 HOH B 73 673 219 HOH HOH . P 6 HOH B 74 674 83 HOH HOH . P 6 HOH B 75 675 48 HOH HOH . P 6 HOH B 76 676 303 HOH HOH . P 6 HOH B 77 677 414 HOH HOH . P 6 HOH B 78 678 229 HOH HOH . P 6 HOH B 79 679 380 HOH HOH . P 6 HOH B 80 680 279 HOH HOH . P 6 HOH B 81 681 179 HOH HOH . P 6 HOH B 82 682 130 HOH HOH . P 6 HOH B 83 683 151 HOH HOH . P 6 HOH B 84 684 105 HOH HOH . P 6 HOH B 85 685 398 HOH HOH . P 6 HOH B 86 686 200 HOH HOH . P 6 HOH B 87 687 21 HOH HOH . P 6 HOH B 88 688 346 HOH HOH . P 6 HOH B 89 689 288 HOH HOH . P 6 HOH B 90 690 212 HOH HOH . P 6 HOH B 91 691 365 HOH HOH . P 6 HOH B 92 692 343 HOH HOH . P 6 HOH B 93 693 284 HOH HOH . P 6 HOH B 94 694 304 HOH HOH . P 6 HOH B 95 695 29 HOH HOH . P 6 HOH B 96 696 434 HOH HOH . P 6 HOH B 97 697 67 HOH HOH . P 6 HOH B 98 698 91 HOH HOH . P 6 HOH B 99 699 339 HOH HOH . P 6 HOH B 100 700 442 HOH HOH . P 6 HOH B 101 701 278 HOH HOH . P 6 HOH B 102 702 354 HOH HOH . P 6 HOH B 103 703 187 HOH HOH . P 6 HOH B 104 704 113 HOH HOH . P 6 HOH B 105 705 47 HOH HOH . P 6 HOH B 106 706 167 HOH HOH . P 6 HOH B 107 707 421 HOH HOH . P 6 HOH B 108 708 413 HOH HOH . P 6 HOH B 109 709 301 HOH HOH . P 6 HOH B 110 710 185 HOH HOH . P 6 HOH B 111 711 68 HOH HOH . P 6 HOH B 112 712 437 HOH HOH . P 6 HOH B 113 713 444 HOH HOH . P 6 HOH B 114 714 424 HOH HOH . P 6 HOH B 115 715 108 HOH HOH . P 6 HOH B 116 716 232 HOH HOH . P 6 HOH B 117 717 441 HOH HOH . P 6 HOH B 118 718 368 HOH HOH . P 6 HOH B 119 719 319 HOH HOH . P 6 HOH B 120 720 308 HOH HOH . P 6 HOH B 121 721 193 HOH HOH . P 6 HOH B 122 722 175 HOH HOH . P 6 HOH B 123 723 124 HOH HOH . P 6 HOH B 124 724 344 HOH HOH . P 6 HOH B 125 725 419 HOH HOH . P 6 HOH B 126 726 289 HOH HOH . P 6 HOH B 127 727 370 HOH HOH . P 6 HOH B 128 728 214 HOH HOH . P 6 HOH B 129 729 410 HOH HOH . P 6 HOH B 130 730 345 HOH HOH . P 6 HOH B 131 731 158 HOH HOH . P 6 HOH B 132 732 145 HOH HOH . P 6 HOH B 133 733 309 HOH HOH . P 6 HOH B 134 734 256 HOH HOH . P 6 HOH B 135 735 443 HOH HOH . P 6 HOH B 136 736 358 HOH HOH . P 6 HOH B 137 737 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . M 4 22.526 -24.177 26.547 1 70.59 ? C FMT 505 B 1 HETATM 2 O O1 FMT . . . M 4 23.334 -23.306 26.866 1 70.61 ? O1 FMT 505 B 1 HETATM 3 O O2 FMT . . . M 4 22.853 -25.404 26.075 1 70.54 ? O2 FMT 505 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #