data_7G9J # _model_server_result.job_id QdAqktZ7xKNjv7chHaSFlQ _model_server_result.datetime_utc '2024-11-25 08:29:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7g9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7G9J # _exptl.entry_id 7G9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7G9J _cell.length_a 71.004 _cell.length_b 71.004 _cell.length_c 196.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7G9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N ? 4 J N N ? 4 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 20 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id ZGX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ZGX _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.846 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7G9J _atom_sites.fract_transf_matrix[1][1] 0.014084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZGX A 1 501 501 ZGX LIG . D 4 DMS A 1 502 1 DMS DMS . E 4 DMS A 1 503 4 DMS DMS . F 5 FMT A 1 504 1 FMT FMT . G 5 FMT A 1 505 5 FMT FMT . H 5 FMT A 1 506 10 FMT FMT . I 4 DMS B 1 501 2 DMS DMS . J 4 DMS B 1 502 3 DMS DMS . K 4 DMS B 1 503 5 DMS DMS . L 5 FMT B 1 504 2 FMT FMT . M 5 FMT B 1 505 7 FMT FMT . N 5 FMT B 1 506 8 FMT FMT . O 5 FMT B 1 507 13 FMT FMT . P 5 FMT B 1 508 14 FMT FMT . Q 5 FMT B 1 509 15 FMT FMT . R 5 FMT B 1 510 16 FMT FMT . S 5 FMT B 1 511 17 FMT FMT . T 6 HOH A 1 601 70 HOH HOH . T 6 HOH A 2 602 57 HOH HOH . T 6 HOH A 3 603 9 HOH HOH . T 6 HOH A 4 604 7 HOH HOH . T 6 HOH A 5 605 178 HOH HOH . T 6 HOH A 6 606 270 HOH HOH . T 6 HOH A 7 607 60 HOH HOH . T 6 HOH A 8 608 17 HOH HOH . T 6 HOH A 9 609 349 HOH HOH . T 6 HOH A 10 610 103 HOH HOH . T 6 HOH A 11 611 40 HOH HOH . T 6 HOH A 12 612 54 HOH HOH . T 6 HOH A 13 613 206 HOH HOH . T 6 HOH A 14 614 34 HOH HOH . T 6 HOH A 15 615 74 HOH HOH . T 6 HOH A 16 616 80 HOH HOH . T 6 HOH A 17 617 272 HOH HOH . T 6 HOH A 18 618 19 HOH HOH . T 6 HOH A 19 619 416 HOH HOH . T 6 HOH A 20 620 102 HOH HOH . T 6 HOH A 21 621 171 HOH HOH . T 6 HOH A 22 622 423 HOH HOH . T 6 HOH A 23 623 52 HOH HOH . T 6 HOH A 24 624 137 HOH HOH . T 6 HOH A 25 625 459 HOH HOH . T 6 HOH A 26 626 291 HOH HOH . T 6 HOH A 27 627 386 HOH HOH . T 6 HOH A 28 628 89 HOH HOH . T 6 HOH A 29 629 30 HOH HOH . T 6 HOH A 30 630 128 HOH HOH . T 6 HOH A 31 631 45 HOH HOH . T 6 HOH A 32 632 15 HOH HOH . T 6 HOH A 33 633 72 HOH HOH . T 6 HOH A 34 634 69 HOH HOH . T 6 HOH A 35 635 46 HOH HOH . T 6 HOH A 36 636 134 HOH HOH . T 6 HOH A 37 637 318 HOH HOH . T 6 HOH A 38 638 77 HOH HOH . T 6 HOH A 39 639 82 HOH HOH . T 6 HOH A 40 640 194 HOH HOH . T 6 HOH A 41 641 148 HOH HOH . T 6 HOH A 42 642 99 HOH HOH . T 6 HOH A 43 643 348 HOH HOH . T 6 HOH A 44 644 433 HOH HOH . T 6 HOH A 45 645 463 HOH HOH . T 6 HOH A 46 646 115 HOH HOH . T 6 HOH A 47 647 31 HOH HOH . T 6 HOH A 48 648 169 HOH HOH . T 6 HOH A 49 649 302 HOH HOH . T 6 HOH A 50 650 332 HOH HOH . T 6 HOH A 51 651 369 HOH HOH . T 6 HOH A 52 652 217 HOH HOH . T 6 HOH A 53 653 400 HOH HOH . T 6 HOH A 54 654 227 HOH HOH . T 6 HOH A 55 655 285 HOH HOH . T 6 HOH A 56 656 239 HOH HOH . T 6 HOH A 57 657 447 HOH HOH . T 6 HOH A 58 658 234 HOH HOH . T 6 HOH A 59 659 456 HOH HOH . T 6 HOH A 60 660 175 HOH HOH . T 6 HOH A 61 661 356 HOH HOH . T 6 HOH A 62 662 455 HOH HOH . T 6 HOH A 63 663 141 HOH HOH . T 6 HOH A 64 664 68 HOH HOH . T 6 HOH A 65 665 294 HOH HOH . T 6 HOH A 66 666 161 HOH HOH . T 6 HOH A 67 667 450 HOH HOH . T 6 HOH A 68 668 462 HOH HOH . T 6 HOH A 69 669 457 HOH HOH . T 6 HOH A 70 670 249 HOH HOH . T 6 HOH A 71 671 246 HOH HOH . U 6 HOH B 1 601 295 HOH HOH . U 6 HOH B 2 602 258 HOH HOH . U 6 HOH B 3 603 35 HOH HOH . U 6 HOH B 4 604 33 HOH HOH . U 6 HOH B 5 605 92 HOH HOH . U 6 HOH B 6 606 390 HOH HOH . U 6 HOH B 7 607 96 HOH HOH . U 6 HOH B 8 608 361 HOH HOH . U 6 HOH B 9 609 5 HOH HOH . U 6 HOH B 10 610 44 HOH HOH . U 6 HOH B 11 611 434 HOH HOH . U 6 HOH B 12 612 259 HOH HOH . U 6 HOH B 13 613 264 HOH HOH . U 6 HOH B 14 614 310 HOH HOH . U 6 HOH B 15 615 26 HOH HOH . U 6 HOH B 16 616 159 HOH HOH . U 6 HOH B 17 617 18 HOH HOH . U 6 HOH B 18 618 56 HOH HOH . U 6 HOH B 19 619 164 HOH HOH . U 6 HOH B 20 620 330 HOH HOH . U 6 HOH B 21 621 8 HOH HOH . U 6 HOH B 22 622 279 HOH HOH . U 6 HOH B 23 623 23 HOH HOH . U 6 HOH B 24 624 41 HOH HOH . U 6 HOH B 25 625 37 HOH HOH . U 6 HOH B 26 626 59 HOH HOH . U 6 HOH B 27 627 71 HOH HOH . U 6 HOH B 28 628 43 HOH HOH . U 6 HOH B 29 629 16 HOH HOH . U 6 HOH B 30 630 104 HOH HOH . U 6 HOH B 31 631 6 HOH HOH . U 6 HOH B 32 632 28 HOH HOH . U 6 HOH B 33 633 261 HOH HOH . U 6 HOH B 34 634 55 HOH HOH . U 6 HOH B 35 635 29 HOH HOH . U 6 HOH B 36 636 406 HOH HOH . U 6 HOH B 37 637 85 HOH HOH . U 6 HOH B 38 638 53 HOH HOH . U 6 HOH B 39 639 12 HOH HOH . U 6 HOH B 40 640 143 HOH HOH . U 6 HOH B 41 641 198 HOH HOH . U 6 HOH B 42 642 265 HOH HOH . U 6 HOH B 43 643 106 HOH HOH . U 6 HOH B 44 644 2 HOH HOH . U 6 HOH B 45 645 39 HOH HOH . U 6 HOH B 46 646 132 HOH HOH . U 6 HOH B 47 647 122 HOH HOH . U 6 HOH B 48 648 11 HOH HOH . U 6 HOH B 49 649 66 HOH HOH . U 6 HOH B 50 650 362 HOH HOH . U 6 HOH B 51 651 262 HOH HOH . U 6 HOH B 52 652 342 HOH HOH . U 6 HOH B 53 653 83 HOH HOH . U 6 HOH B 54 654 168 HOH HOH . U 6 HOH B 55 655 49 HOH HOH . U 6 HOH B 56 656 13 HOH HOH . U 6 HOH B 57 657 25 HOH HOH . U 6 HOH B 58 658 36 HOH HOH . U 6 HOH B 59 659 32 HOH HOH . U 6 HOH B 60 660 4 HOH HOH . U 6 HOH B 61 661 451 HOH HOH . U 6 HOH B 62 662 20 HOH HOH . U 6 HOH B 63 663 337 HOH HOH . U 6 HOH B 64 664 289 HOH HOH . U 6 HOH B 65 665 81 HOH HOH . U 6 HOH B 66 666 458 HOH HOH . U 6 HOH B 67 667 90 HOH HOH . U 6 HOH B 68 668 202 HOH HOH . U 6 HOH B 69 669 283 HOH HOH . U 6 HOH B 70 670 91 HOH HOH . U 6 HOH B 71 671 24 HOH HOH . U 6 HOH B 72 672 1 HOH HOH . U 6 HOH B 73 673 248 HOH HOH . U 6 HOH B 74 674 446 HOH HOH . U 6 HOH B 75 675 293 HOH HOH . U 6 HOH B 76 676 147 HOH HOH . U 6 HOH B 77 677 64 HOH HOH . U 6 HOH B 78 678 454 HOH HOH . U 6 HOH B 79 679 187 HOH HOH . U 6 HOH B 80 680 131 HOH HOH . U 6 HOH B 81 681 373 HOH HOH . U 6 HOH B 82 682 321 HOH HOH . U 6 HOH B 83 683 78 HOH HOH . U 6 HOH B 84 684 174 HOH HOH . U 6 HOH B 85 685 121 HOH HOH . U 6 HOH B 86 686 79 HOH HOH . U 6 HOH B 87 687 232 HOH HOH . U 6 HOH B 88 688 327 HOH HOH . U 6 HOH B 89 689 27 HOH HOH . U 6 HOH B 90 690 38 HOH HOH . U 6 HOH B 91 691 465 HOH HOH . U 6 HOH B 92 692 94 HOH HOH . U 6 HOH B 93 693 67 HOH HOH . U 6 HOH B 94 694 443 HOH HOH . U 6 HOH B 95 695 464 HOH HOH . U 6 HOH B 96 696 222 HOH HOH . U 6 HOH B 97 697 142 HOH HOH . U 6 HOH B 98 698 367 HOH HOH . U 6 HOH B 99 699 303 HOH HOH . U 6 HOH B 100 700 339 HOH HOH . U 6 HOH B 101 701 208 HOH HOH . U 6 HOH B 102 702 167 HOH HOH . U 6 HOH B 103 703 304 HOH HOH . U 6 HOH B 104 704 200 HOH HOH . U 6 HOH B 105 705 394 HOH HOH . U 6 HOH B 106 706 130 HOH HOH . U 6 HOH B 107 707 212 HOH HOH . U 6 HOH B 108 708 127 HOH HOH . U 6 HOH B 109 709 403 HOH HOH . U 6 HOH B 110 710 376 HOH HOH . U 6 HOH B 111 711 461 HOH HOH . U 6 HOH B 112 712 223 HOH HOH . U 6 HOH B 113 713 424 HOH HOH . U 6 HOH B 114 714 158 HOH HOH . U 6 HOH B 115 715 453 HOH HOH . U 6 HOH B 116 716 301 HOH HOH . U 6 HOH B 117 717 346 HOH HOH . U 6 HOH B 118 718 353 HOH HOH . U 6 HOH B 119 719 138 HOH HOH . U 6 HOH B 120 720 308 HOH HOH . U 6 HOH B 121 721 437 HOH HOH . U 6 HOH B 122 722 344 HOH HOH . U 6 HOH B 123 723 189 HOH HOH . U 6 HOH B 124 724 124 HOH HOH . U 6 HOH B 125 725 420 HOH HOH . U 6 HOH B 126 726 319 HOH HOH . U 6 HOH B 127 727 233 HOH HOH . U 6 HOH B 128 728 460 HOH HOH . U 6 HOH B 129 729 440 HOH HOH . U 6 HOH B 130 730 313 HOH HOH . U 6 HOH B 131 731 309 HOH HOH . U 6 HOH B 132 732 351 HOH HOH . U 6 HOH B 133 733 396 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 4.082 -23.125 0.105 1 50.7 ? S DMS 502 A 1 HETATM 2 O O DMS . . . D 4 4.922 -22.656 -1.055 1 50.24 ? O DMS 502 A 1 HETATM 3 C C1 DMS . . . D 4 2.378 -23.335 -0.441 1 50.05 ? C1 DMS 502 A 1 HETATM 4 C C2 DMS . . . D 4 3.889 -21.752 1.256 1 50.25 ? C2 DMS 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #