data_7GAP # _model_server_result.job_id Mxbd1N3XWnTuKjkAPu13aA _model_server_result.datetime_utc '2024-11-01 21:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 7GAP # _exptl.entry_id 7GAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GAP _cell.length_a 61.215 _cell.length_b 61.215 _cell.length_c 35.379 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7GAP _atom_sites.fract_transf_matrix[1][1] 0.016336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KCC A 1 201 201 KCC LIG . C 3 EDO A 1 202 105 EDO EDO . D 3 EDO A 1 203 106 EDO EDO . E 3 EDO A 1 204 107 EDO EDO . F 3 EDO A 1 205 108 EDO EDO . G 3 EDO A 1 206 109 EDO EDO . H 3 EDO A 1 207 110 EDO EDO . I 3 EDO A 1 208 111 EDO EDO . J 3 EDO A 1 209 112 EDO EDO . K 3 EDO A 1 210 113 EDO EDO . L 4 CL A 1 211 114 CL CL . M 5 HOH A 1 301 55 HOH HOH . M 5 HOH A 2 302 86 HOH HOH . M 5 HOH A 3 303 56 HOH HOH . M 5 HOH A 4 304 40 HOH HOH . M 5 HOH A 5 305 10 HOH HOH . M 5 HOH A 6 306 62 HOH HOH . M 5 HOH A 7 307 27 HOH HOH . M 5 HOH A 8 308 52 HOH HOH . M 5 HOH A 9 309 91 HOH HOH . M 5 HOH A 10 310 21 HOH HOH . M 5 HOH A 11 311 44 HOH HOH . M 5 HOH A 12 312 34 HOH HOH . M 5 HOH A 13 313 38 HOH HOH . M 5 HOH A 14 314 49 HOH HOH . M 5 HOH A 15 315 42 HOH HOH . M 5 HOH A 16 316 33 HOH HOH . M 5 HOH A 17 317 9 HOH HOH . M 5 HOH A 18 318 81 HOH HOH . M 5 HOH A 19 319 82 HOH HOH . M 5 HOH A 20 320 22 HOH HOH . M 5 HOH A 21 321 66 HOH HOH . M 5 HOH A 22 322 43 HOH HOH . M 5 HOH A 23 323 77 HOH HOH . M 5 HOH A 24 324 89 HOH HOH . M 5 HOH A 25 325 63 HOH HOH . M 5 HOH A 26 326 32 HOH HOH . M 5 HOH A 27 327 7 HOH HOH . M 5 HOH A 28 328 12 HOH HOH . M 5 HOH A 29 329 8 HOH HOH . M 5 HOH A 30 330 3 HOH HOH . M 5 HOH A 31 331 2 HOH HOH . M 5 HOH A 32 332 17 HOH HOH . M 5 HOH A 33 333 19 HOH HOH . M 5 HOH A 34 334 41 HOH HOH . M 5 HOH A 35 335 5 HOH HOH . M 5 HOH A 36 336 48 HOH HOH . M 5 HOH A 37 337 69 HOH HOH . M 5 HOH A 38 338 16 HOH HOH . M 5 HOH A 39 339 47 HOH HOH . M 5 HOH A 40 340 72 HOH HOH . M 5 HOH A 41 341 1 HOH HOH . M 5 HOH A 42 342 25 HOH HOH . M 5 HOH A 43 343 18 HOH HOH . M 5 HOH A 44 344 53 HOH HOH . M 5 HOH A 45 345 84 HOH HOH . M 5 HOH A 46 346 31 HOH HOH . M 5 HOH A 47 347 4 HOH HOH . M 5 HOH A 48 348 15 HOH HOH . M 5 HOH A 49 349 13 HOH HOH . M 5 HOH A 50 350 23 HOH HOH . M 5 HOH A 51 351 54 HOH HOH . M 5 HOH A 52 352 51 HOH HOH . M 5 HOH A 53 353 93 HOH HOH . M 5 HOH A 54 354 87 HOH HOH . M 5 HOH A 55 355 64 HOH HOH . M 5 HOH A 56 356 59 HOH HOH . M 5 HOH A 57 357 79 HOH HOH . M 5 HOH A 58 358 83 HOH HOH . M 5 HOH A 59 359 36 HOH HOH . M 5 HOH A 60 360 75 HOH HOH . M 5 HOH A 61 361 45 HOH HOH . M 5 HOH A 62 362 11 HOH HOH . M 5 HOH A 63 363 30 HOH HOH . M 5 HOH A 64 364 6 HOH HOH . M 5 HOH A 65 365 60 HOH HOH . M 5 HOH A 66 366 14 HOH HOH . M 5 HOH A 67 367 20 HOH HOH . M 5 HOH A 68 368 71 HOH HOH . M 5 HOH A 69 369 92 HOH HOH . M 5 HOH A 70 370 80 HOH HOH . M 5 HOH A 71 371 46 HOH HOH . M 5 HOH A 72 372 90 HOH HOH . M 5 HOH A 73 373 35 HOH HOH . M 5 HOH A 74 374 24 HOH HOH . M 5 HOH A 75 375 37 HOH HOH . M 5 HOH A 76 376 67 HOH HOH . M 5 HOH A 77 377 39 HOH HOH . M 5 HOH A 78 378 76 HOH HOH . M 5 HOH A 79 379 68 HOH HOH . M 5 HOH A 80 380 88 HOH HOH . M 5 HOH A 81 381 61 HOH HOH . M 5 HOH A 82 382 57 HOH HOH . M 5 HOH A 83 383 26 HOH HOH . M 5 HOH A 84 384 28 HOH HOH . M 5 HOH A 85 385 65 HOH HOH . M 5 HOH A 86 386 29 HOH HOH . M 5 HOH A 87 387 85 HOH HOH . M 5 HOH A 88 388 70 HOH HOH . M 5 HOH A 89 389 78 HOH HOH . M 5 HOH A 90 390 50 HOH HOH . M 5 HOH A 91 391 58 HOH HOH . M 5 HOH A 92 392 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 10.066 -25.614 -12.894 1 76.66 ? C1 EDO 208 A 1 HETATM 2 O O1 EDO . . . I 3 9.765 -26.657 -13.812 1 67.68 ? O1 EDO 208 A 1 HETATM 3 C C2 EDO . . . I 3 10.983 -24.562 -13.445 1 77.94 ? C2 EDO 208 A 1 HETATM 4 O O2 EDO . . . I 3 11.529 -23.679 -12.473 1 77.17 ? O2 EDO 208 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #