data_7GB4
#
_model_server_result.job_id            D1y_M2g2puHwbpg4auSIWw 
_model_server_result.datetime_utc      '2024-11-04 18:36:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gb4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    7GB4 
#
_exptl.entry_id    7GB4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.245 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(5-cyanopyridin-3-yl)-2-(pyridin-3-yl)acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            7GB4 
_cell.length_a            113.728 
_cell.length_b            53.239 
_cell.length_c            44.482 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GB4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H10 N4 O' 
_chem_comp.formula_weight    238.245 
_chem_comp.id                KO9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(5-cyanopyridin-3-yl)-2-(pyridin-3-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 KO9 doub 182 n y 
N C6 KO9 sing 183 n y 
C5 C4 KO9 sing 184 n y 
C6 C2 KO9 doub 185 n y 
C4 C3 KO9 doub 186 n y 
C2 C3 KO9 sing 187 n y 
C2 C1 KO9 sing 188 n n 
N3 C11 KO9 trip 189 n n 
O C KO9 doub 190 n n 
C1 C KO9 sing 191 n n 
C11 C10 KO9 sing 192 n n 
C N1 KO9 sing 193 n n 
C12 C10 KO9 doub 194 n y 
C12 C7 KO9 sing 195 n y 
C10 C9 KO9 sing 196 n y 
N1 C7 KO9 sing 197 n n 
C7 C8 KO9 doub 198 n y 
C9 N2 KO9 doub 199 n y 
C8 N2 KO9 sing 200 n y 
N1 H1 KO9 sing 201 n n 
C4 H2 KO9 sing 202 n n 
C5 H3 KO9 sing 203 n n 
C6 H4 KO9 sing 204 n n 
C8 H5 KO9 sing 205 n n 
C9 H6 KO9 sing 206 n n 
C12 H7 KO9 sing 207 n n 
C1 H8 KO9 sing 208 n n 
C1 H9 KO9 sing 209 n n 
C3 H10 KO9 sing 210 n n 
#
_atom_sites.entry_id                     7GB4 
_atom_sites.fract_transf_matrix[1][1]    0.008793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001943 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018783 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023023 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 1002 DMS DMS . 
C 2 DMS A 1 402 1003 DMS DMS . 
D 2 DMS A 1 403 1004 DMS DMS . 
E 2 DMS A 1 404 1006 DMS DMS . 
F 3 KO9 A 1 405 1101 KO9 LIG . 
G 4 HOH A 1 501 241 HOH HOH . 
G 4 HOH A 2 502 25 HOH HOH . 
G 4 HOH A 3 503 199 HOH HOH . 
G 4 HOH A 4 504 130 HOH HOH . 
G 4 HOH A 5 505 198 HOH HOH . 
G 4 HOH A 6 506 214 HOH HOH . 
G 4 HOH A 7 507 9 HOH HOH . 
G 4 HOH A 8 508 89 HOH HOH . 
G 4 HOH A 9 509 63 HOH HOH . 
G 4 HOH A 10 510 35 HOH HOH . 
G 4 HOH A 11 511 193 HOH HOH . 
G 4 HOH A 12 512 128 HOH HOH . 
G 4 HOH A 13 513 34 HOH HOH . 
G 4 HOH A 14 514 252 HOH HOH . 
G 4 HOH A 15 515 70 HOH HOH . 
G 4 HOH A 16 516 223 HOH HOH . 
G 4 HOH A 17 517 171 HOH HOH . 
G 4 HOH A 18 518 43 HOH HOH . 
G 4 HOH A 19 519 150 HOH HOH . 
G 4 HOH A 20 520 141 HOH HOH . 
G 4 HOH A 21 521 24 HOH HOH . 
G 4 HOH A 22 522 107 HOH HOH . 
G 4 HOH A 23 523 142 HOH HOH . 
G 4 HOH A 24 524 42 HOH HOH . 
G 4 HOH A 25 525 93 HOH HOH . 
G 4 HOH A 26 526 10 HOH HOH . 
G 4 HOH A 27 527 4 HOH HOH . 
G 4 HOH A 28 528 119 HOH HOH . 
G 4 HOH A 29 529 29 HOH HOH . 
G 4 HOH A 30 530 1 HOH HOH . 
G 4 HOH A 31 531 208 HOH HOH . 
G 4 HOH A 32 532 50 HOH HOH . 
G 4 HOH A 33 533 74 HOH HOH . 
G 4 HOH A 34 534 104 HOH HOH . 
G 4 HOH A 35 535 242 HOH HOH . 
G 4 HOH A 36 536 37 HOH HOH . 
G 4 HOH A 37 537 55 HOH HOH . 
G 4 HOH A 38 538 60 HOH HOH . 
G 4 HOH A 39 539 79 HOH HOH . 
G 4 HOH A 40 540 100 HOH HOH . 
G 4 HOH A 41 541 95 HOH HOH . 
G 4 HOH A 42 542 132 HOH HOH . 
G 4 HOH A 43 543 220 HOH HOH . 
G 4 HOH A 44 544 184 HOH HOH . 
G 4 HOH A 45 545 152 HOH HOH . 
G 4 HOH A 46 546 108 HOH HOH . 
G 4 HOH A 47 547 52 HOH HOH . 
G 4 HOH A 48 548 240 HOH HOH . 
G 4 HOH A 49 549 122 HOH HOH . 
G 4 HOH A 50 550 133 HOH HOH . 
G 4 HOH A 51 551 38 HOH HOH . 
G 4 HOH A 52 552 76 HOH HOH . 
G 4 HOH A 53 553 73 HOH HOH . 
G 4 HOH A 54 554 66 HOH HOH . 
G 4 HOH A 55 555 105 HOH HOH . 
G 4 HOH A 56 556 28 HOH HOH . 
G 4 HOH A 57 557 209 HOH HOH . 
G 4 HOH A 58 558 201 HOH HOH . 
G 4 HOH A 59 559 99 HOH HOH . 
G 4 HOH A 60 560 197 HOH HOH . 
G 4 HOH A 61 561 41 HOH HOH . 
G 4 HOH A 62 562 136 HOH HOH . 
G 4 HOH A 63 563 153 HOH HOH . 
G 4 HOH A 64 564 6 HOH HOH . 
G 4 HOH A 65 565 62 HOH HOH . 
G 4 HOH A 66 566 53 HOH HOH . 
G 4 HOH A 67 567 30 HOH HOH . 
G 4 HOH A 68 568 85 HOH HOH . 
G 4 HOH A 69 569 33 HOH HOH . 
G 4 HOH A 70 570 239 HOH HOH . 
G 4 HOH A 71 571 59 HOH HOH . 
G 4 HOH A 72 572 86 HOH HOH . 
G 4 HOH A 73 573 123 HOH HOH . 
G 4 HOH A 74 574 20 HOH HOH . 
G 4 HOH A 75 575 45 HOH HOH . 
G 4 HOH A 76 576 195 HOH HOH . 
G 4 HOH A 77 577 98 HOH HOH . 
G 4 HOH A 78 578 27 HOH HOH . 
G 4 HOH A 79 579 40 HOH HOH . 
G 4 HOH A 80 580 84 HOH HOH . 
G 4 HOH A 81 581 65 HOH HOH . 
G 4 HOH A 82 582 12 HOH HOH . 
G 4 HOH A 83 583 15 HOH HOH . 
G 4 HOH A 84 584 49 HOH HOH . 
G 4 HOH A 85 585 36 HOH HOH . 
G 4 HOH A 86 586 232 HOH HOH . 
G 4 HOH A 87 587 5 HOH HOH . 
G 4 HOH A 88 588 75 HOH HOH . 
G 4 HOH A 89 589 81 HOH HOH . 
G 4 HOH A 90 590 3 HOH HOH . 
G 4 HOH A 91 591 129 HOH HOH . 
G 4 HOH A 92 592 11 HOH HOH . 
G 4 HOH A 93 593 88 HOH HOH . 
G 4 HOH A 94 594 207 HOH HOH . 
G 4 HOH A 95 595 212 HOH HOH . 
G 4 HOH A 96 596 21 HOH HOH . 
G 4 HOH A 97 597 194 HOH HOH . 
G 4 HOH A 98 598 57 HOH HOH . 
G 4 HOH A 99 599 17 HOH HOH . 
G 4 HOH A 100 600 58 HOH HOH . 
G 4 HOH A 101 601 19 HOH HOH . 
G 4 HOH A 102 602 13 HOH HOH . 
G 4 HOH A 103 603 243 HOH HOH . 
G 4 HOH A 104 604 83 HOH HOH . 
G 4 HOH A 105 605 64 HOH HOH . 
G 4 HOH A 106 606 116 HOH HOH . 
G 4 HOH A 107 607 77 HOH HOH . 
G 4 HOH A 108 608 218 HOH HOH . 
G 4 HOH A 109 609 114 HOH HOH . 
G 4 HOH A 110 610 175 HOH HOH . 
G 4 HOH A 111 611 8 HOH HOH . 
G 4 HOH A 112 612 117 HOH HOH . 
G 4 HOH A 113 613 82 HOH HOH . 
G 4 HOH A 114 614 7 HOH HOH . 
G 4 HOH A 115 615 61 HOH HOH . 
G 4 HOH A 116 616 165 HOH HOH . 
G 4 HOH A 117 617 118 HOH HOH . 
G 4 HOH A 118 618 237 HOH HOH . 
G 4 HOH A 119 619 44 HOH HOH . 
G 4 HOH A 120 620 225 HOH HOH . 
G 4 HOH A 121 621 167 HOH HOH . 
G 4 HOH A 122 622 26 HOH HOH . 
G 4 HOH A 123 623 173 HOH HOH . 
G 4 HOH A 124 624 96 HOH HOH . 
G 4 HOH A 125 625 169 HOH HOH . 
G 4 HOH A 126 626 245 HOH HOH . 
G 4 HOH A 127 627 97 HOH HOH . 
G 4 HOH A 128 628 69 HOH HOH . 
G 4 HOH A 129 629 162 HOH HOH . 
G 4 HOH A 130 630 144 HOH HOH . 
G 4 HOH A 131 631 145 HOH HOH . 
G 4 HOH A 132 632 92 HOH HOH . 
G 4 HOH A 133 633 90 HOH HOH . 
G 4 HOH A 134 634 2 HOH HOH . 
G 4 HOH A 135 635 56 HOH HOH . 
G 4 HOH A 136 636 224 HOH HOH . 
G 4 HOH A 137 637 135 HOH HOH . 
G 4 HOH A 138 638 18 HOH HOH . 
G 4 HOH A 139 639 72 HOH HOH . 
G 4 HOH A 140 640 31 HOH HOH . 
G 4 HOH A 141 641 51 HOH HOH . 
G 4 HOH A 142 642 32 HOH HOH . 
G 4 HOH A 143 643 172 HOH HOH . 
G 4 HOH A 144 644 91 HOH HOH . 
G 4 HOH A 145 645 210 HOH HOH . 
G 4 HOH A 146 646 80 HOH HOH . 
G 4 HOH A 147 647 127 HOH HOH . 
G 4 HOH A 148 648 168 HOH HOH . 
G 4 HOH A 149 649 166 HOH HOH . 
G 4 HOH A 150 650 14 HOH HOH . 
G 4 HOH A 151 651 250 HOH HOH . 
G 4 HOH A 152 652 160 HOH HOH . 
G 4 HOH A 153 653 78 HOH HOH . 
G 4 HOH A 154 654 54 HOH HOH . 
G 4 HOH A 155 655 143 HOH HOH . 
G 4 HOH A 156 656 102 HOH HOH . 
G 4 HOH A 157 657 22 HOH HOH . 
G 4 HOH A 158 658 115 HOH HOH . 
G 4 HOH A 159 659 157 HOH HOH . 
G 4 HOH A 160 660 176 HOH HOH . 
G 4 HOH A 161 661 138 HOH HOH . 
G 4 HOH A 162 662 164 HOH HOH . 
G 4 HOH A 163 663 205 HOH HOH . 
G 4 HOH A 164 664 23 HOH HOH . 
G 4 HOH A 165 665 68 HOH HOH . 
G 4 HOH A 166 666 124 HOH HOH . 
G 4 HOH A 167 667 137 HOH HOH . 
G 4 HOH A 168 668 204 HOH HOH . 
G 4 HOH A 169 669 48 HOH HOH . 
G 4 HOH A 170 670 215 HOH HOH . 
G 4 HOH A 171 671 148 HOH HOH . 
G 4 HOH A 172 672 103 HOH HOH . 
G 4 HOH A 173 673 113 HOH HOH . 
G 4 HOH A 174 674 16 HOH HOH . 
G 4 HOH A 175 675 110 HOH HOH . 
G 4 HOH A 176 676 206 HOH HOH . 
G 4 HOH A 177 677 106 HOH HOH . 
G 4 HOH A 178 678 185 HOH HOH . 
G 4 HOH A 179 679 182 HOH HOH . 
G 4 HOH A 180 680 213 HOH HOH . 
G 4 HOH A 181 681 246 HOH HOH . 
G 4 HOH A 182 682 155 HOH HOH . 
G 4 HOH A 183 683 202 HOH HOH . 
G 4 HOH A 184 684 187 HOH HOH . 
G 4 HOH A 185 685 222 HOH HOH . 
G 4 HOH A 186 686 147 HOH HOH . 
G 4 HOH A 187 687 229 HOH HOH . 
G 4 HOH A 188 688 228 HOH HOH . 
G 4 HOH A 189 689 112 HOH HOH . 
G 4 HOH A 190 690 149 HOH HOH . 
G 4 HOH A 191 691 120 HOH HOH . 
G 4 HOH A 192 692 244 HOH HOH . 
G 4 HOH A 193 693 47 HOH HOH . 
G 4 HOH A 194 694 177 HOH HOH . 
G 4 HOH A 195 695 163 HOH HOH . 
G 4 HOH A 196 696 219 HOH HOH . 
G 4 HOH A 197 697 234 HOH HOH . 
G 4 HOH A 198 698 216 HOH HOH . 
G 4 HOH A 199 699 231 HOH HOH . 
G 4 HOH A 200 700 200 HOH HOH . 
G 4 HOH A 201 701 203 HOH HOH . 
G 4 HOH A 202 702 235 HOH HOH . 
G 4 HOH A 203 703 158 HOH HOH . 
G 4 HOH A 204 704 170 HOH HOH . 
G 4 HOH A 205 705 233 HOH HOH . 
G 4 HOH A 206 706 211 HOH HOH . 
G 4 HOH A 207 707 180 HOH HOH . 
G 4 HOH A 208 708 71 HOH HOH . 
G 4 HOH A 209 709 109 HOH HOH . 
G 4 HOH A 210 710 178 HOH HOH . 
G 4 HOH A 211 711 238 HOH HOH . 
G 4 HOH A 212 712 134 HOH HOH . 
G 4 HOH A 213 713 159 HOH HOH . 
G 4 HOH A 214 714 255 HOH HOH . 
G 4 HOH A 215 715 217 HOH HOH . 
G 4 HOH A 216 716 126 HOH HOH . 
G 4 HOH A 217 717 125 HOH HOH . 
G 4 HOH A 218 718 249 HOH HOH . 
G 4 HOH A 219 719 188 HOH HOH . 
G 4 HOH A 220 720 196 HOH HOH . 
G 4 HOH A 221 721 161 HOH HOH . 
G 4 HOH A 222 722 189 HOH HOH . 
G 4 HOH A 223 723 181 HOH HOH . 
G 4 HOH A 224 724 101 HOH HOH . 
G 4 HOH A 225 725 253 HOH HOH . 
G 4 HOH A 226 726 154 HOH HOH . 
G 4 HOH A 227 727 251 HOH HOH . 
G 4 HOH A 228 728 46 HOH HOH . 
G 4 HOH A 229 729 87 HOH HOH . 
G 4 HOH A 230 730 131 HOH HOH . 
G 4 HOH A 231 731 139 HOH HOH . 
G 4 HOH A 232 732 111 HOH HOH . 
G 4 HOH A 233 733 67 HOH HOH . 
G 4 HOH A 234 734 39 HOH HOH . 
G 4 HOH A 235 735 156 HOH HOH . 
G 4 HOH A 236 736 186 HOH HOH . 
G 4 HOH A 237 737 121 HOH HOH . 
G 4 HOH A 238 738 192 HOH HOH . 
G 4 HOH A 239 739 191 HOH HOH . 
G 4 HOH A 240 740 94 HOH HOH . 
G 4 HOH A 241 741 254 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KO9 . . . F 3 9.581 -0.648 22.154 0.64 34.49 ? N1 KO9 405 A 1 
HETATM 2 N N3 KO9 . . . F 3 14.859 -2.156 20.284 0.64 37.71 ? N3 KO9 405 A 1 
HETATM 3 C C4 KO9 . . . F 3 5.185 1.601 18.855 0.64 30.44 ? C4 KO9 405 A 1 
HETATM 4 C C5 KO9 . . . F 3 5.709 1.342 17.602 0.64 29.9 ? C5 KO9 405 A 1 
HETATM 5 C C6 KO9 . . . F 3 7.286 -0.072 18.468 0.64 29.83 ? C6 KO9 405 A 1 
HETATM 6 C C7 KO9 . . . F 3 10.943 -0.449 22.461 0.64 35.92 ? C7 KO9 405 A 1 
HETATM 7 C C8 KO9 . . . F 3 11.447 0.526 23.327 0.64 36.72 ? C8 KO9 405 A 1 
HETATM 8 C C10 KO9 . . . F 3 13.212 -0.908 21.826 0.64 36.83 ? C10 KO9 405 A 1 
HETATM 9 C C11 KO9 . . . F 3 14.149 -1.594 20.978 0.64 37.38 ? C11 KO9 405 A 1 
HETATM 10 C C9 KO9 . . . F 3 13.611 0.105 22.696 0.64 37.08 ? C9 KO9 405 A 1 
HETATM 11 N N2 KO9 . . . F 3 12.755 0.808 23.448 0.64 37.3 ? N2 KO9 405 A 1 
HETATM 12 C C12 KO9 . . . F 3 11.854 -1.194 21.729 0.64 36.42 ? C12 KO9 405 A 1 
HETATM 13 C C KO9 . . . F 3 8.861 0.024 21.237 0.64 33.01 ? C KO9 405 A 1 
HETATM 14 O O KO9 . . . F 3 9.26 1.042 20.678 0.64 32.8 ? O KO9 405 A 1 
HETATM 15 C C1 KO9 . . . F 3 7.504 -0.578 20.93 0.64 31.94 ? C1 KO9 405 A 1 
HETATM 16 C C2 KO9 . . . F 3 6.836 0.116 19.765 0.64 30.74 ? C2 KO9 405 A 1 
HETATM 17 N N KO9 . . . F 3 6.747 0.52 17.396 0.64 29.47 ? N KO9 405 A 1 
HETATM 18 C C3 KO9 . . . F 3 5.759 0.972 19.945 0.64 30.41 ? C3 KO9 405 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           18 
#