data_7GBN
#
_model_server_result.job_id            hQxEXvdC3tDQFCrOIwDYSQ 
_model_server_result.datetime_utc      '2024-11-04 18:18:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7GBN 
#
_exptl.entry_id    7GBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.9 
_cell.angle_gamma         90 
_cell.entry_id            7GBN 
_cell.length_a            114.131 
_cell.length_b            53.426 
_cell.length_c            45.118 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7GBN 
_atom_sites.fract_transf_matrix[1][1]    0.008762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001846 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 1002 DMS DMS . 
C 2 DMS A 1 402 1003 DMS DMS . 
D 2 DMS A 1 403 1004 DMS DMS . 
E 3 KXR A 1 404 4000 KXR LIG . 
F 4 HOH A 1 501 69 HOH HOH . 
F 4 HOH A 2 502 198 HOH HOH . 
F 4 HOH A 3 503 70 HOH HOH . 
F 4 HOH A 4 504 147 HOH HOH . 
F 4 HOH A 5 505 113 HOH HOH . 
F 4 HOH A 6 506 9 HOH HOH . 
F 4 HOH A 7 507 31 HOH HOH . 
F 4 HOH A 8 508 86 HOH HOH . 
F 4 HOH A 9 509 77 HOH HOH . 
F 4 HOH A 10 510 61 HOH HOH . 
F 4 HOH A 11 511 93 HOH HOH . 
F 4 HOH A 12 512 109 HOH HOH . 
F 4 HOH A 13 513 30 HOH HOH . 
F 4 HOH A 14 514 128 HOH HOH . 
F 4 HOH A 15 515 206 HOH HOH . 
F 4 HOH A 16 516 26 HOH HOH . 
F 4 HOH A 17 517 173 HOH HOH . 
F 4 HOH A 18 518 10 HOH HOH . 
F 4 HOH A 19 519 111 HOH HOH . 
F 4 HOH A 20 520 53 HOH HOH . 
F 4 HOH A 21 521 221 HOH HOH . 
F 4 HOH A 22 522 29 HOH HOH . 
F 4 HOH A 23 523 126 HOH HOH . 
F 4 HOH A 24 524 33 HOH HOH . 
F 4 HOH A 25 525 4 HOH HOH . 
F 4 HOH A 26 526 57 HOH HOH . 
F 4 HOH A 27 527 81 HOH HOH . 
F 4 HOH A 28 528 219 HOH HOH . 
F 4 HOH A 29 529 23 HOH HOH . 
F 4 HOH A 30 530 32 HOH HOH . 
F 4 HOH A 31 531 103 HOH HOH . 
F 4 HOH A 32 532 85 HOH HOH . 
F 4 HOH A 33 533 11 HOH HOH . 
F 4 HOH A 34 534 1 HOH HOH . 
F 4 HOH A 35 535 108 HOH HOH . 
F 4 HOH A 36 536 55 HOH HOH . 
F 4 HOH A 37 537 47 HOH HOH . 
F 4 HOH A 38 538 200 HOH HOH . 
F 4 HOH A 39 539 199 HOH HOH . 
F 4 HOH A 40 540 66 HOH HOH . 
F 4 HOH A 41 541 130 HOH HOH . 
F 4 HOH A 42 542 6 HOH HOH . 
F 4 HOH A 43 543 52 HOH HOH . 
F 4 HOH A 44 544 215 HOH HOH . 
F 4 HOH A 45 545 38 HOH HOH . 
F 4 HOH A 46 546 74 HOH HOH . 
F 4 HOH A 47 547 207 HOH HOH . 
F 4 HOH A 48 548 73 HOH HOH . 
F 4 HOH A 49 549 19 HOH HOH . 
F 4 HOH A 50 550 40 HOH HOH . 
F 4 HOH A 51 551 161 HOH HOH . 
F 4 HOH A 52 552 51 HOH HOH . 
F 4 HOH A 53 553 72 HOH HOH . 
F 4 HOH A 54 554 148 HOH HOH . 
F 4 HOH A 55 555 56 HOH HOH . 
F 4 HOH A 56 556 110 HOH HOH . 
F 4 HOH A 57 557 35 HOH HOH . 
F 4 HOH A 58 558 212 HOH HOH . 
F 4 HOH A 59 559 12 HOH HOH . 
F 4 HOH A 60 560 45 HOH HOH . 
F 4 HOH A 61 561 201 HOH HOH . 
F 4 HOH A 62 562 15 HOH HOH . 
F 4 HOH A 63 563 169 HOH HOH . 
F 4 HOH A 64 564 121 HOH HOH . 
F 4 HOH A 65 565 20 HOH HOH . 
F 4 HOH A 66 566 25 HOH HOH . 
F 4 HOH A 67 567 214 HOH HOH . 
F 4 HOH A 68 568 78 HOH HOH . 
F 4 HOH A 69 569 225 HOH HOH . 
F 4 HOH A 70 570 157 HOH HOH . 
F 4 HOH A 71 571 24 HOH HOH . 
F 4 HOH A 72 572 37 HOH HOH . 
F 4 HOH A 73 573 190 HOH HOH . 
F 4 HOH A 74 574 7 HOH HOH . 
F 4 HOH A 75 575 119 HOH HOH . 
F 4 HOH A 76 576 175 HOH HOH . 
F 4 HOH A 77 577 3 HOH HOH . 
F 4 HOH A 78 578 5 HOH HOH . 
F 4 HOH A 79 579 177 HOH HOH . 
F 4 HOH A 80 580 36 HOH HOH . 
F 4 HOH A 81 581 90 HOH HOH . 
F 4 HOH A 82 582 105 HOH HOH . 
F 4 HOH A 83 583 118 HOH HOH . 
F 4 HOH A 84 584 140 HOH HOH . 
F 4 HOH A 85 585 60 HOH HOH . 
F 4 HOH A 86 586 92 HOH HOH . 
F 4 HOH A 87 587 67 HOH HOH . 
F 4 HOH A 88 588 76 HOH HOH . 
F 4 HOH A 89 589 156 HOH HOH . 
F 4 HOH A 90 590 49 HOH HOH . 
F 4 HOH A 91 591 27 HOH HOH . 
F 4 HOH A 92 592 122 HOH HOH . 
F 4 HOH A 93 593 114 HOH HOH . 
F 4 HOH A 94 594 171 HOH HOH . 
F 4 HOH A 95 595 84 HOH HOH . 
F 4 HOH A 96 596 208 HOH HOH . 
F 4 HOH A 97 597 2 HOH HOH . 
F 4 HOH A 98 598 13 HOH HOH . 
F 4 HOH A 99 599 95 HOH HOH . 
F 4 HOH A 100 600 8 HOH HOH . 
F 4 HOH A 101 601 192 HOH HOH . 
F 4 HOH A 102 602 46 HOH HOH . 
F 4 HOH A 103 603 83 HOH HOH . 
F 4 HOH A 104 604 39 HOH HOH . 
F 4 HOH A 105 605 176 HOH HOH . 
F 4 HOH A 106 606 98 HOH HOH . 
F 4 HOH A 107 607 184 HOH HOH . 
F 4 HOH A 108 608 217 HOH HOH . 
F 4 HOH A 109 609 164 HOH HOH . 
F 4 HOH A 110 610 64 HOH HOH . 
F 4 HOH A 111 611 123 HOH HOH . 
F 4 HOH A 112 612 80 HOH HOH . 
F 4 HOH A 113 613 68 HOH HOH . 
F 4 HOH A 114 614 100 HOH HOH . 
F 4 HOH A 115 615 137 HOH HOH . 
F 4 HOH A 116 616 89 HOH HOH . 
F 4 HOH A 117 617 44 HOH HOH . 
F 4 HOH A 118 618 127 HOH HOH . 
F 4 HOH A 119 619 17 HOH HOH . 
F 4 HOH A 120 620 202 HOH HOH . 
F 4 HOH A 121 621 158 HOH HOH . 
F 4 HOH A 122 622 97 HOH HOH . 
F 4 HOH A 123 623 16 HOH HOH . 
F 4 HOH A 124 624 79 HOH HOH . 
F 4 HOH A 125 625 50 HOH HOH . 
F 4 HOH A 126 626 204 HOH HOH . 
F 4 HOH A 127 627 88 HOH HOH . 
F 4 HOH A 128 628 185 HOH HOH . 
F 4 HOH A 129 629 101 HOH HOH . 
F 4 HOH A 130 630 43 HOH HOH . 
F 4 HOH A 131 631 196 HOH HOH . 
F 4 HOH A 132 632 188 HOH HOH . 
F 4 HOH A 133 633 172 HOH HOH . 
F 4 HOH A 134 634 14 HOH HOH . 
F 4 HOH A 135 635 48 HOH HOH . 
F 4 HOH A 136 636 129 HOH HOH . 
F 4 HOH A 137 637 117 HOH HOH . 
F 4 HOH A 138 638 216 HOH HOH . 
F 4 HOH A 139 639 159 HOH HOH . 
F 4 HOH A 140 640 220 HOH HOH . 
F 4 HOH A 141 641 96 HOH HOH . 
F 4 HOH A 142 642 218 HOH HOH . 
F 4 HOH A 143 643 65 HOH HOH . 
F 4 HOH A 144 644 102 HOH HOH . 
F 4 HOH A 145 645 63 HOH HOH . 
F 4 HOH A 146 646 71 HOH HOH . 
F 4 HOH A 147 647 18 HOH HOH . 
F 4 HOH A 148 648 28 HOH HOH . 
F 4 HOH A 149 649 91 HOH HOH . 
F 4 HOH A 150 650 124 HOH HOH . 
F 4 HOH A 151 651 143 HOH HOH . 
F 4 HOH A 152 652 54 HOH HOH . 
F 4 HOH A 153 653 150 HOH HOH . 
F 4 HOH A 154 654 186 HOH HOH . 
F 4 HOH A 155 655 139 HOH HOH . 
F 4 HOH A 156 656 168 HOH HOH . 
F 4 HOH A 157 657 59 HOH HOH . 
F 4 HOH A 158 658 152 HOH HOH . 
F 4 HOH A 159 659 197 HOH HOH . 
F 4 HOH A 160 660 22 HOH HOH . 
F 4 HOH A 161 661 193 HOH HOH . 
F 4 HOH A 162 662 116 HOH HOH . 
F 4 HOH A 163 663 224 HOH HOH . 
F 4 HOH A 164 664 138 HOH HOH . 
F 4 HOH A 165 665 195 HOH HOH . 
F 4 HOH A 166 666 21 HOH HOH . 
F 4 HOH A 167 667 133 HOH HOH . 
F 4 HOH A 168 668 181 HOH HOH . 
F 4 HOH A 169 669 182 HOH HOH . 
F 4 HOH A 170 670 42 HOH HOH . 
F 4 HOH A 171 671 166 HOH HOH . 
F 4 HOH A 172 672 191 HOH HOH . 
F 4 HOH A 173 673 120 HOH HOH . 
F 4 HOH A 174 674 179 HOH HOH . 
F 4 HOH A 175 675 187 HOH HOH . 
F 4 HOH A 176 676 183 HOH HOH . 
F 4 HOH A 177 677 132 HOH HOH . 
F 4 HOH A 178 678 142 HOH HOH . 
F 4 HOH A 179 679 149 HOH HOH . 
F 4 HOH A 180 680 145 HOH HOH . 
F 4 HOH A 181 681 203 HOH HOH . 
F 4 HOH A 182 682 141 HOH HOH . 
F 4 HOH A 183 683 162 HOH HOH . 
F 4 HOH A 184 684 62 HOH HOH . 
F 4 HOH A 185 685 180 HOH HOH . 
F 4 HOH A 186 686 146 HOH HOH . 
F 4 HOH A 187 687 135 HOH HOH . 
F 4 HOH A 188 688 189 HOH HOH . 
F 4 HOH A 189 689 194 HOH HOH . 
F 4 HOH A 190 690 163 HOH HOH . 
F 4 HOH A 191 691 136 HOH HOH . 
F 4 HOH A 192 692 213 HOH HOH . 
F 4 HOH A 193 693 107 HOH HOH . 
F 4 HOH A 194 694 165 HOH HOH . 
F 4 HOH A 195 695 94 HOH HOH . 
F 4 HOH A 196 696 106 HOH HOH . 
F 4 HOH A 197 697 170 HOH HOH . 
F 4 HOH A 198 698 211 HOH HOH . 
F 4 HOH A 199 699 75 HOH HOH . 
F 4 HOH A 200 700 34 HOH HOH . 
F 4 HOH A 201 701 222 HOH HOH . 
F 4 HOH A 202 702 112 HOH HOH . 
F 4 HOH A 203 703 104 HOH HOH . 
F 4 HOH A 204 704 115 HOH HOH . 
F 4 HOH A 205 705 178 HOH HOH . 
F 4 HOH A 206 706 87 HOH HOH . 
F 4 HOH A 207 707 41 HOH HOH . 
F 4 HOH A 208 708 154 HOH HOH . 
F 4 HOH A 209 709 153 HOH HOH . 
F 4 HOH A 210 710 210 HOH HOH . 
F 4 HOH A 211 711 226 HOH HOH . 
F 4 HOH A 212 712 209 HOH HOH . 
F 4 HOH A 213 713 155 HOH HOH . 
F 4 HOH A 214 714 125 HOH HOH . 
F 4 HOH A 215 715 144 HOH HOH . 
F 4 HOH A 216 716 174 HOH HOH . 
F 4 HOH A 217 717 131 HOH HOH . 
F 4 HOH A 218 718 223 HOH HOH . 
F 4 HOH A 219 719 151 HOH HOH . 
F 4 HOH A 220 720 99 HOH HOH . 
F 4 HOH A 221 721 167 HOH HOH . 
F 4 HOH A 222 722 205 HOH HOH . 
F 4 HOH A 223 723 82 HOH HOH . 
F 4 HOH A 224 724 58 HOH HOH . 
F 4 HOH A 225 725 160 HOH HOH . 
F 4 HOH A 226 726 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . B 2 7.473 -28.167 21.45 1 50.91 ? S DMS 401 A 1 
HETATM 2 O O DMS . . . B 2 7.939 -27.065 22.296 1 51.18 ? O DMS 401 A 1 
HETATM 3 C C1 DMS . . . B 2 6.391 -29.115 22.519 1 50.84 ? C1 DMS 401 A 1 
HETATM 4 C C2 DMS . . . B 2 6.246 -27.447 20.414 1 50.66 ? C2 DMS 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#