data_7GBN # _model_server_result.job_id h0LqSAyIvsCL8G7-Kl1-bw _model_server_result.datetime_utc '2024-11-04 18:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GBN # _exptl.entry_id 7GBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.287 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-fluoro-5-{[(2S)-4-oxoazetidin-2-yl]oxy}phenyl)-2-(pyrimidin-5-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.9 _cell.angle_gamma 90 _cell.entry_id 7GBN _cell.length_a 114.131 _cell.length_b 53.426 _cell.length_c 45.118 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H13 F N4 O3' _chem_comp.formula_weight 316.287 _chem_comp.id KXR _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-fluoro-5-{[(2S)-4-oxoazetidin-2-yl]oxy}phenyl)-2-(pyrimidin-5-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C7 KXR doub 182 n y N1 C6 KXR sing 183 n y C7 N2 KXR sing 184 n y C6 C5 KXR doub 185 n y N2 C8 KXR doub 186 n y C5 C8 KXR sing 187 n y C5 C4 KXR sing 188 n n O C3 KXR doub 189 n n C4 C3 KXR sing 190 n n C3 N KXR sing 191 n n O2 C13 KXR doub 192 n n N3 C13 KXR sing 193 n n N3 C11 KXR sing 194 n n N C2 KXR sing 195 n n C1 C2 KXR doub 196 n y C1 C KXR sing 197 n y C13 C12 KXR sing 198 n n C2 C9 KXR sing 199 n y F C KXR sing 200 n n C C14 KXR doub 201 n y C9 C10 KXR doub 202 n y C14 C10 KXR sing 203 n y C10 O1 KXR sing 204 n n C11 O1 KXR sing 205 n n C11 C12 KXR sing 206 n n N3 H1 KXR sing 207 n n C4 H2 KXR sing 208 n n C4 H3 KXR sing 209 n n C6 H4 KXR sing 210 n n C7 H5 KXR sing 211 n n C8 H6 KXR sing 212 n n N H7 KXR sing 213 n n C1 H8 KXR sing 214 n n C11 H9 KXR sing 215 n n C9 H10 KXR sing 216 n n C12 H11 KXR sing 217 n n C12 H12 KXR sing 218 n n C14 H13 KXR sing 219 n n # _atom_sites.entry_id 7GBN _atom_sites.fract_transf_matrix[1][1] 0.008762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 KXR A 1 404 4000 KXR LIG . F 4 HOH A 1 501 69 HOH HOH . F 4 HOH A 2 502 198 HOH HOH . F 4 HOH A 3 503 70 HOH HOH . F 4 HOH A 4 504 147 HOH HOH . F 4 HOH A 5 505 113 HOH HOH . F 4 HOH A 6 506 9 HOH HOH . F 4 HOH A 7 507 31 HOH HOH . F 4 HOH A 8 508 86 HOH HOH . F 4 HOH A 9 509 77 HOH HOH . F 4 HOH A 10 510 61 HOH HOH . F 4 HOH A 11 511 93 HOH HOH . F 4 HOH A 12 512 109 HOH HOH . F 4 HOH A 13 513 30 HOH HOH . F 4 HOH A 14 514 128 HOH HOH . F 4 HOH A 15 515 206 HOH HOH . F 4 HOH A 16 516 26 HOH HOH . F 4 HOH A 17 517 173 HOH HOH . F 4 HOH A 18 518 10 HOH HOH . F 4 HOH A 19 519 111 HOH HOH . F 4 HOH A 20 520 53 HOH HOH . F 4 HOH A 21 521 221 HOH HOH . F 4 HOH A 22 522 29 HOH HOH . F 4 HOH A 23 523 126 HOH HOH . F 4 HOH A 24 524 33 HOH HOH . F 4 HOH A 25 525 4 HOH HOH . F 4 HOH A 26 526 57 HOH HOH . F 4 HOH A 27 527 81 HOH HOH . F 4 HOH A 28 528 219 HOH HOH . F 4 HOH A 29 529 23 HOH HOH . F 4 HOH A 30 530 32 HOH HOH . F 4 HOH A 31 531 103 HOH HOH . F 4 HOH A 32 532 85 HOH HOH . F 4 HOH A 33 533 11 HOH HOH . F 4 HOH A 34 534 1 HOH HOH . F 4 HOH A 35 535 108 HOH HOH . F 4 HOH A 36 536 55 HOH HOH . F 4 HOH A 37 537 47 HOH HOH . F 4 HOH A 38 538 200 HOH HOH . F 4 HOH A 39 539 199 HOH HOH . F 4 HOH A 40 540 66 HOH HOH . F 4 HOH A 41 541 130 HOH HOH . F 4 HOH A 42 542 6 HOH HOH . F 4 HOH A 43 543 52 HOH HOH . F 4 HOH A 44 544 215 HOH HOH . F 4 HOH A 45 545 38 HOH HOH . F 4 HOH A 46 546 74 HOH HOH . F 4 HOH A 47 547 207 HOH HOH . F 4 HOH A 48 548 73 HOH HOH . F 4 HOH A 49 549 19 HOH HOH . F 4 HOH A 50 550 40 HOH HOH . F 4 HOH A 51 551 161 HOH HOH . F 4 HOH A 52 552 51 HOH HOH . F 4 HOH A 53 553 72 HOH HOH . F 4 HOH A 54 554 148 HOH HOH . F 4 HOH A 55 555 56 HOH HOH . F 4 HOH A 56 556 110 HOH HOH . F 4 HOH A 57 557 35 HOH HOH . F 4 HOH A 58 558 212 HOH HOH . F 4 HOH A 59 559 12 HOH HOH . F 4 HOH A 60 560 45 HOH HOH . F 4 HOH A 61 561 201 HOH HOH . F 4 HOH A 62 562 15 HOH HOH . F 4 HOH A 63 563 169 HOH HOH . F 4 HOH A 64 564 121 HOH HOH . F 4 HOH A 65 565 20 HOH HOH . F 4 HOH A 66 566 25 HOH HOH . F 4 HOH A 67 567 214 HOH HOH . F 4 HOH A 68 568 78 HOH HOH . F 4 HOH A 69 569 225 HOH HOH . F 4 HOH A 70 570 157 HOH HOH . F 4 HOH A 71 571 24 HOH HOH . F 4 HOH A 72 572 37 HOH HOH . F 4 HOH A 73 573 190 HOH HOH . F 4 HOH A 74 574 7 HOH HOH . F 4 HOH A 75 575 119 HOH HOH . F 4 HOH A 76 576 175 HOH HOH . F 4 HOH A 77 577 3 HOH HOH . F 4 HOH A 78 578 5 HOH HOH . F 4 HOH A 79 579 177 HOH HOH . F 4 HOH A 80 580 36 HOH HOH . F 4 HOH A 81 581 90 HOH HOH . F 4 HOH A 82 582 105 HOH HOH . F 4 HOH A 83 583 118 HOH HOH . F 4 HOH A 84 584 140 HOH HOH . F 4 HOH A 85 585 60 HOH HOH . F 4 HOH A 86 586 92 HOH HOH . F 4 HOH A 87 587 67 HOH HOH . F 4 HOH A 88 588 76 HOH HOH . F 4 HOH A 89 589 156 HOH HOH . F 4 HOH A 90 590 49 HOH HOH . F 4 HOH A 91 591 27 HOH HOH . F 4 HOH A 92 592 122 HOH HOH . F 4 HOH A 93 593 114 HOH HOH . F 4 HOH A 94 594 171 HOH HOH . F 4 HOH A 95 595 84 HOH HOH . F 4 HOH A 96 596 208 HOH HOH . F 4 HOH A 97 597 2 HOH HOH . F 4 HOH A 98 598 13 HOH HOH . F 4 HOH A 99 599 95 HOH HOH . F 4 HOH A 100 600 8 HOH HOH . F 4 HOH A 101 601 192 HOH HOH . F 4 HOH A 102 602 46 HOH HOH . F 4 HOH A 103 603 83 HOH HOH . F 4 HOH A 104 604 39 HOH HOH . F 4 HOH A 105 605 176 HOH HOH . F 4 HOH A 106 606 98 HOH HOH . F 4 HOH A 107 607 184 HOH HOH . F 4 HOH A 108 608 217 HOH HOH . F 4 HOH A 109 609 164 HOH HOH . F 4 HOH A 110 610 64 HOH HOH . F 4 HOH A 111 611 123 HOH HOH . F 4 HOH A 112 612 80 HOH HOH . F 4 HOH A 113 613 68 HOH HOH . F 4 HOH A 114 614 100 HOH HOH . F 4 HOH A 115 615 137 HOH HOH . F 4 HOH A 116 616 89 HOH HOH . F 4 HOH A 117 617 44 HOH HOH . F 4 HOH A 118 618 127 HOH HOH . F 4 HOH A 119 619 17 HOH HOH . F 4 HOH A 120 620 202 HOH HOH . F 4 HOH A 121 621 158 HOH HOH . F 4 HOH A 122 622 97 HOH HOH . F 4 HOH A 123 623 16 HOH HOH . F 4 HOH A 124 624 79 HOH HOH . F 4 HOH A 125 625 50 HOH HOH . F 4 HOH A 126 626 204 HOH HOH . F 4 HOH A 127 627 88 HOH HOH . F 4 HOH A 128 628 185 HOH HOH . F 4 HOH A 129 629 101 HOH HOH . F 4 HOH A 130 630 43 HOH HOH . F 4 HOH A 131 631 196 HOH HOH . F 4 HOH A 132 632 188 HOH HOH . F 4 HOH A 133 633 172 HOH HOH . F 4 HOH A 134 634 14 HOH HOH . F 4 HOH A 135 635 48 HOH HOH . F 4 HOH A 136 636 129 HOH HOH . F 4 HOH A 137 637 117 HOH HOH . F 4 HOH A 138 638 216 HOH HOH . F 4 HOH A 139 639 159 HOH HOH . F 4 HOH A 140 640 220 HOH HOH . F 4 HOH A 141 641 96 HOH HOH . F 4 HOH A 142 642 218 HOH HOH . F 4 HOH A 143 643 65 HOH HOH . F 4 HOH A 144 644 102 HOH HOH . F 4 HOH A 145 645 63 HOH HOH . F 4 HOH A 146 646 71 HOH HOH . F 4 HOH A 147 647 18 HOH HOH . F 4 HOH A 148 648 28 HOH HOH . F 4 HOH A 149 649 91 HOH HOH . F 4 HOH A 150 650 124 HOH HOH . F 4 HOH A 151 651 143 HOH HOH . F 4 HOH A 152 652 54 HOH HOH . F 4 HOH A 153 653 150 HOH HOH . F 4 HOH A 154 654 186 HOH HOH . F 4 HOH A 155 655 139 HOH HOH . F 4 HOH A 156 656 168 HOH HOH . F 4 HOH A 157 657 59 HOH HOH . F 4 HOH A 158 658 152 HOH HOH . F 4 HOH A 159 659 197 HOH HOH . F 4 HOH A 160 660 22 HOH HOH . F 4 HOH A 161 661 193 HOH HOH . F 4 HOH A 162 662 116 HOH HOH . F 4 HOH A 163 663 224 HOH HOH . F 4 HOH A 164 664 138 HOH HOH . F 4 HOH A 165 665 195 HOH HOH . F 4 HOH A 166 666 21 HOH HOH . F 4 HOH A 167 667 133 HOH HOH . F 4 HOH A 168 668 181 HOH HOH . F 4 HOH A 169 669 182 HOH HOH . F 4 HOH A 170 670 42 HOH HOH . F 4 HOH A 171 671 166 HOH HOH . F 4 HOH A 172 672 191 HOH HOH . F 4 HOH A 173 673 120 HOH HOH . F 4 HOH A 174 674 179 HOH HOH . F 4 HOH A 175 675 187 HOH HOH . F 4 HOH A 176 676 183 HOH HOH . F 4 HOH A 177 677 132 HOH HOH . F 4 HOH A 178 678 142 HOH HOH . F 4 HOH A 179 679 149 HOH HOH . F 4 HOH A 180 680 145 HOH HOH . F 4 HOH A 181 681 203 HOH HOH . F 4 HOH A 182 682 141 HOH HOH . F 4 HOH A 183 683 162 HOH HOH . F 4 HOH A 184 684 62 HOH HOH . F 4 HOH A 185 685 180 HOH HOH . F 4 HOH A 186 686 146 HOH HOH . F 4 HOH A 187 687 135 HOH HOH . F 4 HOH A 188 688 189 HOH HOH . F 4 HOH A 189 689 194 HOH HOH . F 4 HOH A 190 690 163 HOH HOH . F 4 HOH A 191 691 136 HOH HOH . F 4 HOH A 192 692 213 HOH HOH . F 4 HOH A 193 693 107 HOH HOH . F 4 HOH A 194 694 165 HOH HOH . F 4 HOH A 195 695 94 HOH HOH . F 4 HOH A 196 696 106 HOH HOH . F 4 HOH A 197 697 170 HOH HOH . F 4 HOH A 198 698 211 HOH HOH . F 4 HOH A 199 699 75 HOH HOH . F 4 HOH A 200 700 34 HOH HOH . F 4 HOH A 201 701 222 HOH HOH . F 4 HOH A 202 702 112 HOH HOH . F 4 HOH A 203 703 104 HOH HOH . F 4 HOH A 204 704 115 HOH HOH . F 4 HOH A 205 705 178 HOH HOH . F 4 HOH A 206 706 87 HOH HOH . F 4 HOH A 207 707 41 HOH HOH . F 4 HOH A 208 708 154 HOH HOH . F 4 HOH A 209 709 153 HOH HOH . F 4 HOH A 210 710 210 HOH HOH . F 4 HOH A 211 711 226 HOH HOH . F 4 HOH A 212 712 209 HOH HOH . F 4 HOH A 213 713 155 HOH HOH . F 4 HOH A 214 714 125 HOH HOH . F 4 HOH A 215 715 144 HOH HOH . F 4 HOH A 216 716 174 HOH HOH . F 4 HOH A 217 717 131 HOH HOH . F 4 HOH A 218 718 223 HOH HOH . F 4 HOH A 219 719 151 HOH HOH . F 4 HOH A 220 720 99 HOH HOH . F 4 HOH A 221 721 167 HOH HOH . F 4 HOH A 222 722 205 HOH HOH . F 4 HOH A 223 723 82 HOH HOH . F 4 HOH A 224 724 58 HOH HOH . F 4 HOH A 225 725 160 HOH HOH . F 4 HOH A 226 726 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KXR . . . E 3 6.961 0.804 17.308 1 41.02 ? N1 KXR 404 A 1 HETATM 2 N N3 KXR . . . E 3 12.885 4.421 21.454 1 51.2 ? N3 KXR 404 A 1 HETATM 3 C C4 KXR . . . E 3 7.873 -0.453 20.735 1 42.26 ? C4 KXR 404 A 1 HETATM 4 C C5 KXR . . . E 3 7.053 0.112 19.598 1 41.53 ? C5 KXR 404 A 1 HETATM 5 C C6 KXR . . . E 3 7.518 0.096 18.295 1 40.88 ? C6 KXR 404 A 1 HETATM 6 C C7 KXR . . . E 3 5.908 1.551 17.659 1 41.54 ? C7 KXR 404 A 1 HETATM 7 C C8 KXR . . . E 3 5.971 0.946 19.834 1 41.53 ? C8 KXR 404 A 1 HETATM 8 C C10 KXR . . . E 3 13.152 1.396 22.572 1 47.19 ? C10 KXR 404 A 1 HETATM 9 C C13 KXR . . . E 3 13.485 5.53 21.926 1 51.73 ? C13 KXR 404 A 1 HETATM 10 N N KXR . . . E 3 10.112 -0.502 21.614 1 43.75 ? N KXR 404 A 1 HETATM 11 N N2 KXR . . . E 3 5.381 1.676 18.879 1 41.45 ? N2 KXR 404 A 1 HETATM 12 C C1 KXR . . . E 3 12.413 -1.183 21.864 1 45.33 ? C1 KXR 404 A 1 HETATM 13 C C11 KXR . . . E 3 12.763 3.789 22.766 1 50.15 ? C11 KXR 404 A 1 HETATM 14 O O1 KXR . . . E 3 13.622 2.641 22.935 1 48.58 ? O1 KXR 404 A 1 HETATM 15 C C2 KXR . . . E 3 11.45 -0.181 21.944 1 45.03 ? C2 KXR 404 A 1 HETATM 16 C C9 KXR . . . E 3 11.818 1.112 22.309 1 46.28 ? C9 KXR 404 A 1 HETATM 17 F F KXR . . . E 3 14.653 -1.835 22.072 1 46.13 ? F KXR 404 A 1 HETATM 18 C C12 KXR . . . E 3 13.511 4.992 23.351 1 50.94 ? C12 KXR 404 A 1 HETATM 19 C C14 KXR . . . E 3 14.127 0.413 22.486 1 46.6 ? C14 KXR 404 A 1 HETATM 20 C C KXR . . . E 3 13.718 -0.85 22.132 1 45.97 ? C KXR 404 A 1 HETATM 21 O O KXR . . . E 3 9.365 1.431 20.651 1 42.41 ? O KXR 404 A 1 HETATM 22 O O2 KXR . . . E 3 13.859 6.56 21.367 1 52.56 ? O2 KXR 404 A 1 HETATM 23 C C3 KXR . . . E 3 9.184 0.264 20.993 1 42.71 ? C3 KXR 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #