data_7GBP # _model_server_result.job_id M6Nu6USgTF-YPiJ7NK1DZg _model_server_result.datetime_utc '2024-11-04 18:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GBP # _exptl.entry_id 7GBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.787 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-(3-chlorophenyl)-2-(dimethylamino)-N-(4-methylpyridin-3-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.54 _cell.angle_gamma 90 _cell.entry_id 7GBP _cell.length_a 113.575 _cell.length_b 53.709 _cell.length_c 44.865 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H18 Cl N3 O' _chem_comp.formula_weight 303.787 _chem_comp.id KYC _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-(3-chlorophenyl)-2-(dimethylamino)-N-(4-methylpyridin-3-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C6 KYC doub 182 n y N2 C5 KYC sing 183 n y C6 C7 KYC sing 184 n y C5 C4 KYC doub 185 n y C7 C8 KYC doub 186 n y C4 C8 KYC sing 187 n y C4 N1 KYC sing 188 n n C8 C9 KYC sing 189 n n CL C14 KYC sing 190 n n N1 C3 KYC sing 191 n n O C3 KYC doub 192 n n C3 C2 KYC sing 193 n n C14 C15 KYC doub 194 n y C14 C13 KYC sing 195 n y C15 C10 KYC sing 196 n y C2 C10 KYC sing 197 n n C2 N KYC sing 198 n n C13 C12 KYC doub 199 n y C10 C11 KYC doub 200 n y N C KYC sing 201 n n N C1 KYC sing 202 n n C12 C11 KYC sing 203 n y N1 H1 KYC sing 204 n n C5 H2 KYC sing 205 n n C6 H3 KYC sing 206 n n C7 H4 KYC sing 207 n n C13 H5 KYC sing 208 n n C15 H6 KYC sing 209 n n C12 H7 KYC sing 210 n n C11 H8 KYC sing 211 n n C2 H9 KYC sing 212 n n C1 H11 KYC sing 213 n n C1 H12 KYC sing 214 n n C1 H13 KYC sing 215 n n C H14 KYC sing 216 n n C H15 KYC sing 217 n n C H16 KYC sing 218 n n C9 H17 KYC sing 219 n n C9 H18 KYC sing 220 n n C9 H19 KYC sing 221 n n # _atom_sites.entry_id 7GBP _atom_sites.fract_transf_matrix[1][1] 0.008805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001798 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 KYC A 1 405 1101 KYC LIG . G 4 HOH A 1 501 33 HOH HOH . G 4 HOH A 2 502 238 HOH HOH . G 4 HOH A 3 503 227 HOH HOH . G 4 HOH A 4 504 21 HOH HOH . G 4 HOH A 5 505 183 HOH HOH . G 4 HOH A 6 506 122 HOH HOH . G 4 HOH A 7 507 176 HOH HOH . G 4 HOH A 8 508 166 HOH HOH . G 4 HOH A 9 509 83 HOH HOH . G 4 HOH A 10 510 34 HOH HOH . G 4 HOH A 11 511 231 HOH HOH . G 4 HOH A 12 512 177 HOH HOH . G 4 HOH A 13 513 9 HOH HOH . G 4 HOH A 14 514 206 HOH HOH . G 4 HOH A 15 515 199 HOH HOH . G 4 HOH A 16 516 64 HOH HOH . G 4 HOH A 17 517 28 HOH HOH . G 4 HOH A 18 518 118 HOH HOH . G 4 HOH A 19 519 117 HOH HOH . G 4 HOH A 20 520 157 HOH HOH . G 4 HOH A 21 521 24 HOH HOH . G 4 HOH A 22 522 92 HOH HOH . G 4 HOH A 23 523 126 HOH HOH . G 4 HOH A 24 524 32 HOH HOH . G 4 HOH A 25 525 133 HOH HOH . G 4 HOH A 26 526 60 HOH HOH . G 4 HOH A 27 527 30 HOH HOH . G 4 HOH A 28 528 87 HOH HOH . G 4 HOH A 29 529 150 HOH HOH . G 4 HOH A 30 530 152 HOH HOH . G 4 HOH A 31 531 4 HOH HOH . G 4 HOH A 32 532 205 HOH HOH . G 4 HOH A 33 533 10 HOH HOH . G 4 HOH A 34 534 226 HOH HOH . G 4 HOH A 35 535 243 HOH HOH . G 4 HOH A 36 536 68 HOH HOH . G 4 HOH A 37 537 184 HOH HOH . G 4 HOH A 38 538 91 HOH HOH . G 4 HOH A 39 539 240 HOH HOH . G 4 HOH A 40 540 57 HOH HOH . G 4 HOH A 41 541 218 HOH HOH . G 4 HOH A 42 542 36 HOH HOH . G 4 HOH A 43 543 182 HOH HOH . G 4 HOH A 44 544 16 HOH HOH . G 4 HOH A 45 545 194 HOH HOH . G 4 HOH A 46 546 47 HOH HOH . G 4 HOH A 47 547 49 HOH HOH . G 4 HOH A 48 548 38 HOH HOH . G 4 HOH A 49 549 112 HOH HOH . G 4 HOH A 50 550 158 HOH HOH . G 4 HOH A 51 551 195 HOH HOH . G 4 HOH A 52 552 108 HOH HOH . G 4 HOH A 53 553 185 HOH HOH . G 4 HOH A 54 554 40 HOH HOH . G 4 HOH A 55 555 202 HOH HOH . G 4 HOH A 56 556 14 HOH HOH . G 4 HOH A 57 557 35 HOH HOH . G 4 HOH A 58 558 70 HOH HOH . G 4 HOH A 59 559 55 HOH HOH . G 4 HOH A 60 560 74 HOH HOH . G 4 HOH A 61 561 59 HOH HOH . G 4 HOH A 62 562 54 HOH HOH . G 4 HOH A 63 563 196 HOH HOH . G 4 HOH A 64 564 12 HOH HOH . G 4 HOH A 65 565 237 HOH HOH . G 4 HOH A 66 566 97 HOH HOH . G 4 HOH A 67 567 1 HOH HOH . G 4 HOH A 68 568 37 HOH HOH . G 4 HOH A 69 569 77 HOH HOH . G 4 HOH A 70 570 48 HOH HOH . G 4 HOH A 71 571 95 HOH HOH . G 4 HOH A 72 572 203 HOH HOH . G 4 HOH A 73 573 20 HOH HOH . G 4 HOH A 74 574 26 HOH HOH . G 4 HOH A 75 575 230 HOH HOH . G 4 HOH A 76 576 3 HOH HOH . G 4 HOH A 77 577 104 HOH HOH . G 4 HOH A 78 578 29 HOH HOH . G 4 HOH A 79 579 17 HOH HOH . G 4 HOH A 80 580 78 HOH HOH . G 4 HOH A 81 581 219 HOH HOH . G 4 HOH A 82 582 178 HOH HOH . G 4 HOH A 83 583 251 HOH HOH . G 4 HOH A 84 584 25 HOH HOH . G 4 HOH A 85 585 160 HOH HOH . G 4 HOH A 86 586 210 HOH HOH . G 4 HOH A 87 587 58 HOH HOH . G 4 HOH A 88 588 39 HOH HOH . G 4 HOH A 89 589 15 HOH HOH . G 4 HOH A 90 590 204 HOH HOH . G 4 HOH A 91 591 153 HOH HOH . G 4 HOH A 92 592 136 HOH HOH . G 4 HOH A 93 593 76 HOH HOH . G 4 HOH A 94 594 18 HOH HOH . G 4 HOH A 95 595 11 HOH HOH . G 4 HOH A 96 596 5 HOH HOH . G 4 HOH A 97 597 234 HOH HOH . G 4 HOH A 98 598 102 HOH HOH . G 4 HOH A 99 599 69 HOH HOH . G 4 HOH A 100 600 79 HOH HOH . G 4 HOH A 101 601 67 HOH HOH . G 4 HOH A 102 602 228 HOH HOH . G 4 HOH A 103 603 53 HOH HOH . G 4 HOH A 104 604 71 HOH HOH . G 4 HOH A 105 605 200 HOH HOH . G 4 HOH A 106 606 212 HOH HOH . G 4 HOH A 107 607 125 HOH HOH . G 4 HOH A 108 608 13 HOH HOH . G 4 HOH A 109 609 167 HOH HOH . G 4 HOH A 110 610 86 HOH HOH . G 4 HOH A 111 611 124 HOH HOH . G 4 HOH A 112 612 192 HOH HOH . G 4 HOH A 113 613 215 HOH HOH . G 4 HOH A 114 614 6 HOH HOH . G 4 HOH A 115 615 105 HOH HOH . G 4 HOH A 116 616 135 HOH HOH . G 4 HOH A 117 617 119 HOH HOH . G 4 HOH A 118 618 56 HOH HOH . G 4 HOH A 119 619 84 HOH HOH . G 4 HOH A 120 620 7 HOH HOH . G 4 HOH A 121 621 19 HOH HOH . G 4 HOH A 122 622 72 HOH HOH . G 4 HOH A 123 623 107 HOH HOH . G 4 HOH A 124 624 51 HOH HOH . G 4 HOH A 125 625 207 HOH HOH . G 4 HOH A 126 626 140 HOH HOH . G 4 HOH A 127 627 123 HOH HOH . G 4 HOH A 128 628 106 HOH HOH . G 4 HOH A 129 629 149 HOH HOH . G 4 HOH A 130 630 66 HOH HOH . G 4 HOH A 131 631 129 HOH HOH . G 4 HOH A 132 632 62 HOH HOH . G 4 HOH A 133 633 52 HOH HOH . G 4 HOH A 134 634 235 HOH HOH . G 4 HOH A 135 635 27 HOH HOH . G 4 HOH A 136 636 144 HOH HOH . G 4 HOH A 137 637 111 HOH HOH . G 4 HOH A 138 638 89 HOH HOH . G 4 HOH A 139 639 229 HOH HOH . G 4 HOH A 140 640 2 HOH HOH . G 4 HOH A 141 641 233 HOH HOH . G 4 HOH A 142 642 50 HOH HOH . G 4 HOH A 143 643 214 HOH HOH . G 4 HOH A 144 644 31 HOH HOH . G 4 HOH A 145 645 190 HOH HOH . G 4 HOH A 146 646 193 HOH HOH . G 4 HOH A 147 647 75 HOH HOH . G 4 HOH A 148 648 90 HOH HOH . G 4 HOH A 149 649 159 HOH HOH . G 4 HOH A 150 650 43 HOH HOH . G 4 HOH A 151 651 73 HOH HOH . G 4 HOH A 152 652 246 HOH HOH . G 4 HOH A 153 653 241 HOH HOH . G 4 HOH A 154 654 109 HOH HOH . G 4 HOH A 155 655 99 HOH HOH . G 4 HOH A 156 656 147 HOH HOH . G 4 HOH A 157 657 103 HOH HOH . G 4 HOH A 158 658 42 HOH HOH . G 4 HOH A 159 659 41 HOH HOH . G 4 HOH A 160 660 132 HOH HOH . G 4 HOH A 161 661 213 HOH HOH . G 4 HOH A 162 662 172 HOH HOH . G 4 HOH A 163 663 82 HOH HOH . G 4 HOH A 164 664 94 HOH HOH . G 4 HOH A 165 665 189 HOH HOH . G 4 HOH A 166 666 8 HOH HOH . G 4 HOH A 167 667 116 HOH HOH . G 4 HOH A 168 668 223 HOH HOH . G 4 HOH A 169 669 131 HOH HOH . G 4 HOH A 170 670 63 HOH HOH . G 4 HOH A 171 671 23 HOH HOH . G 4 HOH A 172 672 96 HOH HOH . G 4 HOH A 173 673 191 HOH HOH . G 4 HOH A 174 674 143 HOH HOH . G 4 HOH A 175 675 221 HOH HOH . G 4 HOH A 176 676 179 HOH HOH . G 4 HOH A 177 677 46 HOH HOH . G 4 HOH A 178 678 128 HOH HOH . G 4 HOH A 179 679 101 HOH HOH . G 4 HOH A 180 680 161 HOH HOH . G 4 HOH A 181 681 216 HOH HOH . G 4 HOH A 182 682 220 HOH HOH . G 4 HOH A 183 683 130 HOH HOH . G 4 HOH A 184 684 173 HOH HOH . G 4 HOH A 185 685 45 HOH HOH . G 4 HOH A 186 686 201 HOH HOH . G 4 HOH A 187 687 85 HOH HOH . G 4 HOH A 188 688 181 HOH HOH . G 4 HOH A 189 689 146 HOH HOH . G 4 HOH A 190 690 224 HOH HOH . G 4 HOH A 191 691 197 HOH HOH . G 4 HOH A 192 692 155 HOH HOH . G 4 HOH A 193 693 247 HOH HOH . G 4 HOH A 194 694 232 HOH HOH . G 4 HOH A 195 695 188 HOH HOH . G 4 HOH A 196 696 138 HOH HOH . G 4 HOH A 197 697 151 HOH HOH . G 4 HOH A 198 698 164 HOH HOH . G 4 HOH A 199 699 165 HOH HOH . G 4 HOH A 200 700 239 HOH HOH . G 4 HOH A 201 701 139 HOH HOH . G 4 HOH A 202 702 168 HOH HOH . G 4 HOH A 203 703 22 HOH HOH . G 4 HOH A 204 704 113 HOH HOH . G 4 HOH A 205 705 222 HOH HOH . G 4 HOH A 206 706 115 HOH HOH . G 4 HOH A 207 707 217 HOH HOH . G 4 HOH A 208 708 187 HOH HOH . G 4 HOH A 209 709 242 HOH HOH . G 4 HOH A 210 710 148 HOH HOH . G 4 HOH A 211 711 209 HOH HOH . G 4 HOH A 212 712 162 HOH HOH . G 4 HOH A 213 713 244 HOH HOH . G 4 HOH A 214 714 208 HOH HOH . G 4 HOH A 215 715 142 HOH HOH . G 4 HOH A 216 716 225 HOH HOH . G 4 HOH A 217 717 170 HOH HOH . G 4 HOH A 218 718 156 HOH HOH . G 4 HOH A 219 719 211 HOH HOH . G 4 HOH A 220 720 114 HOH HOH . G 4 HOH A 221 721 100 HOH HOH . G 4 HOH A 222 722 127 HOH HOH . G 4 HOH A 223 723 98 HOH HOH . G 4 HOH A 224 724 65 HOH HOH . G 4 HOH A 225 725 171 HOH HOH . G 4 HOH A 226 726 186 HOH HOH . G 4 HOH A 227 727 81 HOH HOH . G 4 HOH A 228 728 134 HOH HOH . G 4 HOH A 229 729 44 HOH HOH . G 4 HOH A 230 730 121 HOH HOH . G 4 HOH A 231 731 174 HOH HOH . G 4 HOH A 232 732 180 HOH HOH . G 4 HOH A 233 733 163 HOH HOH . G 4 HOH A 234 734 93 HOH HOH . G 4 HOH A 235 735 154 HOH HOH . G 4 HOH A 236 736 236 HOH HOH . G 4 HOH A 237 737 80 HOH HOH . G 4 HOH A 238 738 249 HOH HOH . G 4 HOH A 239 739 110 HOH HOH . G 4 HOH A 240 740 137 HOH HOH . G 4 HOH A 241 741 120 HOH HOH . G 4 HOH A 242 742 250 HOH HOH . G 4 HOH A 243 743 198 HOH HOH . G 4 HOH A 244 744 245 HOH HOH . G 4 HOH A 245 745 175 HOH HOH . G 4 HOH A 246 746 61 HOH HOH . G 4 HOH A 247 747 88 HOH HOH . G 4 HOH A 248 748 141 HOH HOH . G 4 HOH A 249 749 145 HOH HOH . G 4 HOH A 250 750 248 HOH HOH . G 4 HOH A 251 751 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KYC . . . F 3 8.075 -0.555 20.86 0.82 38.6 ? N1 KYC 405 A 1 HETATM 2 C C4 KYC . . . F 3 7.27 -0.018 19.828 0.82 37.09 ? C4 KYC 405 A 1 HETATM 3 C C5 KYC . . . F 3 7.675 -0.051 18.495 0.82 36.18 ? C5 KYC 405 A 1 HETATM 4 C C6 KYC . . . F 3 5.896 1.217 17.827 0.82 35.97 ? C6 KYC 405 A 1 HETATM 5 C C7 KYC . . . F 3 5.396 1.288 19.112 0.82 35.97 ? C7 KYC 405 A 1 HETATM 6 C C8 KYC . . . F 3 6.08 0.667 20.152 0.82 36.48 ? C8 KYC 405 A 1 HETATM 7 C C10 KYC . . . F 3 11.267 -0.376 22.765 0.82 42.5 ? C10 KYC 405 A 1 HETATM 8 C C13 KYC . . . F 3 13.971 0.335 22.709 0.82 43.31 ? C13 KYC 405 A 1 HETATM 9 C C15 KYC . . . F 3 12.135 -0.981 21.86 0.82 42.8 ? C15 KYC 405 A 1 HETATM 10 CL CL KYC . . . F 3 14.564 -1.451 20.774 0.82 44.56 ? CL KYC 405 A 1 HETATM 11 C C14 KYC . . . F 3 13.472 -0.625 21.852 0.82 43.57 ? C14 KYC 405 A 1 HETATM 12 C C12 KYC . . . F 3 13.112 0.917 23.628 0.82 43.11 ? C12 KYC 405 A 1 HETATM 13 C C11 KYC . . . F 3 11.775 0.554 23.663 0.82 42.84 ? C11 KYC 405 A 1 HETATM 14 C C2 KYC . . . F 3 9.76 -0.586 22.658 0.82 41.78 ? C2 KYC 405 A 1 HETATM 15 N N KYC . . . F 3 9.302 -1.968 22.967 0.82 42.7 ? N KYC 405 A 1 HETATM 16 C C1 KYC . . . F 3 10.201 -2.734 23.834 0.82 43.17 ? C1 KYC 405 A 1 HETATM 17 C C KYC . . . F 3 7.963 -1.965 23.552 0.82 42.71 ? C KYC 405 A 1 HETATM 18 C C3 KYC . . . F 3 9.168 0.048 21.386 0.82 39.9 ? C3 KYC 405 A 1 HETATM 19 O O KYC . . . F 3 9.665 1.064 20.916 0.82 39.61 ? O KYC 405 A 1 HETATM 20 C C9 KYC . . . F 3 5.563 0.745 21.566 0.82 36.51 ? C9 KYC 405 A 1 HETATM 21 N N2 KYC . . . F 3 7.02 0.563 17.506 0.82 35.83 ? N2 KYC 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #