data_7GBX # _model_server_result.job_id ERFk-nAF1Y3pgGXbFcb2bQ _model_server_result.datetime_utc '2024-11-21 09:20:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GBX # _exptl.entry_id 7GBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.728 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.4 _cell.angle_gamma 90 _cell.entry_id 7GBX _cell.length_a 113.382 _cell.length_b 53.422 _cell.length_c 44.761 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 Cl N3 O' _chem_comp.formula_weight 285.728 _chem_comp.id L6D _chem_comp.mon_nstd_flag . _chem_comp.name N-(1H-benzimidazol-1-yl)-2-(3-chlorophenyl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C7 L6D doub 182 n y N2 C8 L6D sing 183 n y C9 C8 L6D doub 184 n y C9 C10 L6D sing 185 n y C7 N1 L6D sing 186 n y C8 C13 L6D sing 187 n y C10 C11 L6D doub 188 n y N1 C13 L6D sing 189 n y N1 N L6D sing 190 n n C13 C12 L6D doub 191 n y C11 C12 L6D sing 192 n y N C6 L6D sing 193 n n CL C L6D sing 194 n n O C6 L6D doub 195 n n C6 C5 L6D sing 196 n n C14 C L6D doub 197 n y C14 C4 L6D sing 198 n y C C1 L6D sing 199 n y C5 C4 L6D sing 200 n n C4 C3 L6D doub 201 n y C1 C2 L6D doub 202 n y C2 C3 L6D sing 203 n y C5 H1 L6D sing 204 n n C5 H2 L6D sing 205 n n C7 H3 L6D sing 206 n n C10 H4 L6D sing 207 n n C3 H5 L6D sing 208 n n C2 H6 L6D sing 209 n n C1 H7 L6D sing 210 n n C14 H8 L6D sing 211 n n N H9 L6D sing 212 n n C12 H10 L6D sing 213 n n C11 H11 L6D sing 214 n n C9 H12 L6D sing 215 n n # _atom_sites.entry_id 7GBX _atom_sites.fract_transf_matrix[1][1] 0.00882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001778 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 L6D A 1 405 1101 L6D LIG . G 4 HOH A 1 501 111 HOH HOH . G 4 HOH A 2 502 1 HOH HOH . G 4 HOH A 3 503 31 HOH HOH . G 4 HOH A 4 504 109 HOH HOH . G 4 HOH A 5 505 9 HOH HOH . G 4 HOH A 6 506 66 HOH HOH . G 4 HOH A 7 507 27 HOH HOH . G 4 HOH A 8 508 126 HOH HOH . G 4 HOH A 9 509 32 HOH HOH . G 4 HOH A 10 510 62 HOH HOH . G 4 HOH A 11 511 34 HOH HOH . G 4 HOH A 12 512 55 HOH HOH . G 4 HOH A 13 513 108 HOH HOH . G 4 HOH A 14 514 4 HOH HOH . G 4 HOH A 15 515 122 HOH HOH . G 4 HOH A 16 516 70 HOH HOH . G 4 HOH A 17 517 116 HOH HOH . G 4 HOH A 18 518 57 HOH HOH . G 4 HOH A 19 519 54 HOH HOH . G 4 HOH A 20 520 155 HOH HOH . G 4 HOH A 21 521 89 HOH HOH . G 4 HOH A 22 522 58 HOH HOH . G 4 HOH A 23 523 37 HOH HOH . G 4 HOH A 24 524 10 HOH HOH . G 4 HOH A 25 525 23 HOH HOH . G 4 HOH A 26 526 39 HOH HOH . G 4 HOH A 27 527 91 HOH HOH . G 4 HOH A 28 528 21 HOH HOH . G 4 HOH A 29 529 103 HOH HOH . G 4 HOH A 30 530 25 HOH HOH . G 4 HOH A 31 531 20 HOH HOH . G 4 HOH A 32 532 77 HOH HOH . G 4 HOH A 33 533 61 HOH HOH . G 4 HOH A 34 534 48 HOH HOH . G 4 HOH A 35 535 98 HOH HOH . G 4 HOH A 36 536 159 HOH HOH . G 4 HOH A 37 537 84 HOH HOH . G 4 HOH A 38 538 49 HOH HOH . G 4 HOH A 39 539 85 HOH HOH . G 4 HOH A 40 540 65 HOH HOH . G 4 HOH A 41 541 141 HOH HOH . G 4 HOH A 42 542 157 HOH HOH . G 4 HOH A 43 543 74 HOH HOH . G 4 HOH A 44 544 15 HOH HOH . G 4 HOH A 45 545 24 HOH HOH . G 4 HOH A 46 546 78 HOH HOH . G 4 HOH A 47 547 46 HOH HOH . G 4 HOH A 48 548 69 HOH HOH . G 4 HOH A 49 549 38 HOH HOH . G 4 HOH A 50 550 17 HOH HOH . G 4 HOH A 51 551 3 HOH HOH . G 4 HOH A 52 552 115 HOH HOH . G 4 HOH A 53 553 5 HOH HOH . G 4 HOH A 54 554 94 HOH HOH . G 4 HOH A 55 555 6 HOH HOH . G 4 HOH A 56 556 96 HOH HOH . G 4 HOH A 57 557 28 HOH HOH . G 4 HOH A 58 558 12 HOH HOH . G 4 HOH A 59 559 110 HOH HOH . G 4 HOH A 60 560 149 HOH HOH . G 4 HOH A 61 561 36 HOH HOH . G 4 HOH A 62 562 102 HOH HOH . G 4 HOH A 63 563 72 HOH HOH . G 4 HOH A 64 564 51 HOH HOH . G 4 HOH A 65 565 100 HOH HOH . G 4 HOH A 66 566 99 HOH HOH . G 4 HOH A 67 567 76 HOH HOH . G 4 HOH A 68 568 26 HOH HOH . G 4 HOH A 69 569 120 HOH HOH . G 4 HOH A 70 570 13 HOH HOH . G 4 HOH A 71 571 18 HOH HOH . G 4 HOH A 72 572 11 HOH HOH . G 4 HOH A 73 573 41 HOH HOH . G 4 HOH A 74 574 68 HOH HOH . G 4 HOH A 75 575 160 HOH HOH . G 4 HOH A 76 576 164 HOH HOH . G 4 HOH A 77 577 2 HOH HOH . G 4 HOH A 78 578 117 HOH HOH . G 4 HOH A 79 579 7 HOH HOH . G 4 HOH A 80 580 138 HOH HOH . G 4 HOH A 81 581 40 HOH HOH . G 4 HOH A 82 582 73 HOH HOH . G 4 HOH A 83 583 87 HOH HOH . G 4 HOH A 84 584 123 HOH HOH . G 4 HOH A 85 585 106 HOH HOH . G 4 HOH A 86 586 60 HOH HOH . G 4 HOH A 87 587 50 HOH HOH . G 4 HOH A 88 588 127 HOH HOH . G 4 HOH A 89 589 52 HOH HOH . G 4 HOH A 90 590 71 HOH HOH . G 4 HOH A 91 591 47 HOH HOH . G 4 HOH A 92 592 83 HOH HOH . G 4 HOH A 93 593 97 HOH HOH . G 4 HOH A 94 594 124 HOH HOH . G 4 HOH A 95 595 79 HOH HOH . G 4 HOH A 96 596 121 HOH HOH . G 4 HOH A 97 597 143 HOH HOH . G 4 HOH A 98 598 134 HOH HOH . G 4 HOH A 99 599 80 HOH HOH . G 4 HOH A 100 600 14 HOH HOH . G 4 HOH A 101 601 53 HOH HOH . G 4 HOH A 102 602 82 HOH HOH . G 4 HOH A 103 603 67 HOH HOH . G 4 HOH A 104 604 64 HOH HOH . G 4 HOH A 105 605 101 HOH HOH . G 4 HOH A 106 606 142 HOH HOH . G 4 HOH A 107 607 93 HOH HOH . G 4 HOH A 108 608 29 HOH HOH . G 4 HOH A 109 609 88 HOH HOH . G 4 HOH A 110 610 33 HOH HOH . G 4 HOH A 111 611 44 HOH HOH . G 4 HOH A 112 612 104 HOH HOH . G 4 HOH A 113 613 30 HOH HOH . G 4 HOH A 114 614 19 HOH HOH . G 4 HOH A 115 615 22 HOH HOH . G 4 HOH A 116 616 8 HOH HOH . G 4 HOH A 117 617 43 HOH HOH . G 4 HOH A 118 618 148 HOH HOH . G 4 HOH A 119 619 16 HOH HOH . G 4 HOH A 120 620 162 HOH HOH . G 4 HOH A 121 621 45 HOH HOH . G 4 HOH A 122 622 107 HOH HOH . G 4 HOH A 123 623 151 HOH HOH . G 4 HOH A 124 624 119 HOH HOH . G 4 HOH A 125 625 135 HOH HOH . G 4 HOH A 126 626 95 HOH HOH . G 4 HOH A 127 627 139 HOH HOH . G 4 HOH A 128 628 129 HOH HOH . G 4 HOH A 129 629 56 HOH HOH . G 4 HOH A 130 630 144 HOH HOH . G 4 HOH A 131 631 90 HOH HOH . G 4 HOH A 132 632 136 HOH HOH . G 4 HOH A 133 633 163 HOH HOH . G 4 HOH A 134 634 140 HOH HOH . G 4 HOH A 135 635 114 HOH HOH . G 4 HOH A 136 636 152 HOH HOH . G 4 HOH A 137 637 137 HOH HOH . G 4 HOH A 138 638 161 HOH HOH . G 4 HOH A 139 639 130 HOH HOH . G 4 HOH A 140 640 146 HOH HOH . G 4 HOH A 141 641 156 HOH HOH . G 4 HOH A 142 642 153 HOH HOH . G 4 HOH A 143 643 132 HOH HOH . G 4 HOH A 144 644 63 HOH HOH . G 4 HOH A 145 645 105 HOH HOH . G 4 HOH A 146 646 158 HOH HOH . G 4 HOH A 147 647 86 HOH HOH . G 4 HOH A 148 648 118 HOH HOH . G 4 HOH A 149 649 92 HOH HOH . G 4 HOH A 150 650 75 HOH HOH . G 4 HOH A 151 651 145 HOH HOH . G 4 HOH A 152 652 150 HOH HOH . G 4 HOH A 153 653 42 HOH HOH . G 4 HOH A 154 654 133 HOH HOH . G 4 HOH A 155 655 165 HOH HOH . G 4 HOH A 156 656 125 HOH HOH . G 4 HOH A 157 657 113 HOH HOH . G 4 HOH A 158 658 112 HOH HOH . G 4 HOH A 159 659 147 HOH HOH . G 4 HOH A 160 660 59 HOH HOH . G 4 HOH A 161 661 35 HOH HOH . G 4 HOH A 162 662 128 HOH HOH . G 4 HOH A 163 663 154 HOH HOH . G 4 HOH A 164 664 131 HOH HOH . G 4 HOH A 165 665 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L6D . . . F 3 7.585 -0.335 19.466 1 41.47 ? N1 L6D 405 A 1 HETATM 2 C C4 L6D . . . F 3 11.068 -0.678 22.726 1 45.08 ? C4 L6D 405 A 1 HETATM 3 C C5 L6D . . . F 3 9.582 -0.867 22.535 1 44.01 ? C5 L6D 405 A 1 HETATM 4 C C6 L6D . . . F 3 9.133 -0.215 21.241 1 43.15 ? C6 L6D 405 A 1 HETATM 5 C C7 L6D . . . F 3 7.945 -0.297 18.159 1 41.08 ? C7 L6D 405 A 1 HETATM 6 C C8 L6D . . . F 3 6.16 0.883 18.315 1 41.08 ? C8 L6D 405 A 1 HETATM 7 C C10 L6D . . . F 3 4.399 2.24 19.211 1 41.35 ? C10 L6D 405 A 1 HETATM 8 C C13 L6D . . . F 3 6.411 0.402 19.601 1 41.27 ? C13 L6D 405 A 1 HETATM 9 O O L6D . . . F 3 9.509 0.909 20.921 1 42.85 ? O L6D 405 A 1 HETATM 10 C C3 L6D . . . F 3 11.556 0.258 23.629 1 45.25 ? C3 L6D 405 A 1 HETATM 11 C C2 L6D . . . F 3 12.896 0.612 23.628 1 45.67 ? C2 L6D 405 A 1 HETATM 12 C C1 L6D . . . F 3 13.775 0.016 22.734 1 46.37 ? C1 L6D 405 A 1 HETATM 13 C C14 L6D . . . F 3 11.961 -1.318 21.872 1 45.89 ? C14 L6D 405 A 1 HETATM 14 C C L6D . . . F 3 13.293 -0.961 21.886 1 46.77 ? C L6D 405 A 1 HETATM 15 CL CL L6D . . . F 3 14.395 -1.784 20.815 1 48.32 ? CL L6D 405 A 1 HETATM 16 N N L6D . . . F 3 8.276 -0.946 20.505 1 42.51 ? N L6D 405 A 1 HETATM 17 N N2 L6D . . . F 3 7.128 0.411 17.421 1 40.91 ? N2 L6D 405 A 1 HETATM 18 C C12 L6D . . . F 3 5.684 0.827 20.706 1 41.18 ? C12 L6D 405 A 1 HETATM 19 C C11 L6D . . . F 3 4.671 1.756 20.493 1 41.17 ? C11 L6D 405 A 1 HETATM 20 C C9 L6D . . . F 3 5.138 1.809 18.113 1 41.04 ? C9 L6D 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #