data_7GBZ # _model_server_result.job_id EQeu11KMG8hDZgfGcJfkIA _model_server_result.datetime_utc '2024-11-04 18:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GBZ # _exptl.entry_id 7GBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3,4-dimethyl-N-(4-methylpyridin-3-yl)pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 7GBZ _cell.length_a 113.938 _cell.length_b 53.424 _cell.length_c 44.258 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H20 N2 O' _chem_comp.formula_weight 220.311 _chem_comp.id L4U _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3,4-dimethyl-N-(4-methylpyridin-3-yl)pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 L4U doub 182 n y N1 C8 L4U sing 183 n y C9 C10 L4U sing 184 n y C8 C7 L4U doub 185 n y C10 C11 L4U doub 186 n y C7 C11 L4U sing 187 n y C7 N L4U sing 188 n n C11 C12 L4U sing 189 n n O C6 L4U doub 190 n n N C6 L4U sing 191 n n C6 C5 L4U sing 192 n n C2 C1 L4U sing 193 n n C1 C3 L4U sing 194 n n C1 C L4U sing 195 n n C3 C5 L4U sing 196 n n C3 C4 L4U sing 197 n n C4 H1 L4U sing 198 n n C4 H2 L4U sing 199 n n C4 H3 L4U sing 200 n n C5 H4 L4U sing 201 n n C5 H5 L4U sing 202 n n C8 H6 L4U sing 203 n n C10 H7 L4U sing 204 n n C3 H8 L4U sing 205 n n C1 H9 L4U sing 206 n n C2 H10 L4U sing 207 n n C2 H11 L4U sing 208 n n C2 H12 L4U sing 209 n n C H13 L4U sing 210 n n C H14 L4U sing 211 n n C H15 L4U sing 212 n n N H16 L4U sing 213 n n C12 H17 L4U sing 214 n n C12 H18 L4U sing 215 n n C12 H19 L4U sing 216 n n C9 H20 L4U sing 217 n n # _atom_sites.entry_id 7GBZ _atom_sites.fract_transf_matrix[1][1] 0.008777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 L4U A 1 405 1101 L4U LIG . G 4 HOH A 1 501 291 HOH HOH . G 4 HOH A 2 502 29 HOH HOH . G 4 HOH A 3 503 235 HOH HOH . G 4 HOH A 4 504 147 HOH HOH . G 4 HOH A 5 505 34 HOH HOH . G 4 HOH A 6 506 152 HOH HOH . G 4 HOH A 7 507 20 HOH HOH . G 4 HOH A 8 508 108 HOH HOH . G 4 HOH A 9 509 104 HOH HOH . G 4 HOH A 10 510 9 HOH HOH . G 4 HOH A 11 511 52 HOH HOH . G 4 HOH A 12 512 92 HOH HOH . G 4 HOH A 13 513 308 HOH HOH . G 4 HOH A 14 514 142 HOH HOH . G 4 HOH A 15 515 232 HOH HOH . G 4 HOH A 16 516 24 HOH HOH . G 4 HOH A 17 517 81 HOH HOH . G 4 HOH A 18 518 61 HOH HOH . G 4 HOH A 19 519 210 HOH HOH . G 4 HOH A 20 520 39 HOH HOH . G 4 HOH A 21 521 1 HOH HOH . G 4 HOH A 22 522 180 HOH HOH . G 4 HOH A 23 523 217 HOH HOH . G 4 HOH A 24 524 10 HOH HOH . G 4 HOH A 25 525 135 HOH HOH . G 4 HOH A 26 526 67 HOH HOH . G 4 HOH A 27 527 98 HOH HOH . G 4 HOH A 28 528 290 HOH HOH . G 4 HOH A 29 529 286 HOH HOH . G 4 HOH A 30 530 68 HOH HOH . G 4 HOH A 31 531 248 HOH HOH . G 4 HOH A 32 532 144 HOH HOH . G 4 HOH A 33 533 117 HOH HOH . G 4 HOH A 34 534 37 HOH HOH . G 4 HOH A 35 535 149 HOH HOH . G 4 HOH A 36 536 35 HOH HOH . G 4 HOH A 37 537 102 HOH HOH . G 4 HOH A 38 538 207 HOH HOH . G 4 HOH A 39 539 143 HOH HOH . G 4 HOH A 40 540 85 HOH HOH . G 4 HOH A 41 541 166 HOH HOH . G 4 HOH A 42 542 76 HOH HOH . G 4 HOH A 43 543 101 HOH HOH . G 4 HOH A 44 544 243 HOH HOH . G 4 HOH A 45 545 55 HOH HOH . G 4 HOH A 46 546 218 HOH HOH . G 4 HOH A 47 547 260 HOH HOH . G 4 HOH A 48 548 62 HOH HOH . G 4 HOH A 49 549 239 HOH HOH . G 4 HOH A 50 550 114 HOH HOH . G 4 HOH A 51 551 54 HOH HOH . G 4 HOH A 52 552 72 HOH HOH . G 4 HOH A 53 553 303 HOH HOH . G 4 HOH A 54 554 165 HOH HOH . G 4 HOH A 55 555 12 HOH HOH . G 4 HOH A 56 556 93 HOH HOH . G 4 HOH A 57 557 110 HOH HOH . G 4 HOH A 58 558 141 HOH HOH . G 4 HOH A 59 559 75 HOH HOH . G 4 HOH A 60 560 13 HOH HOH . G 4 HOH A 61 561 300 HOH HOH . G 4 HOH A 62 562 83 HOH HOH . G 4 HOH A 63 563 111 HOH HOH . G 4 HOH A 64 564 304 HOH HOH . G 4 HOH A 65 565 148 HOH HOH . G 4 HOH A 66 566 112 HOH HOH . G 4 HOH A 67 567 43 HOH HOH . G 4 HOH A 68 568 90 HOH HOH . G 4 HOH A 69 569 182 HOH HOH . G 4 HOH A 70 570 6 HOH HOH . G 4 HOH A 71 571 88 HOH HOH . G 4 HOH A 72 572 4 HOH HOH . G 4 HOH A 73 573 15 HOH HOH . G 4 HOH A 74 574 42 HOH HOH . G 4 HOH A 75 575 31 HOH HOH . G 4 HOH A 76 576 279 HOH HOH . G 4 HOH A 77 577 82 HOH HOH . G 4 HOH A 78 578 186 HOH HOH . G 4 HOH A 79 579 64 HOH HOH . G 4 HOH A 80 580 163 HOH HOH . G 4 HOH A 81 581 47 HOH HOH . G 4 HOH A 82 582 30 HOH HOH . G 4 HOH A 83 583 19 HOH HOH . G 4 HOH A 84 584 5 HOH HOH . G 4 HOH A 85 585 59 HOH HOH . G 4 HOH A 86 586 123 HOH HOH . G 4 HOH A 87 587 305 HOH HOH . G 4 HOH A 88 588 44 HOH HOH . G 4 HOH A 89 589 121 HOH HOH . G 4 HOH A 90 590 255 HOH HOH . G 4 HOH A 91 591 28 HOH HOH . G 4 HOH A 92 592 3 HOH HOH . G 4 HOH A 93 593 249 HOH HOH . G 4 HOH A 94 594 306 HOH HOH . G 4 HOH A 95 595 87 HOH HOH . G 4 HOH A 96 596 129 HOH HOH . G 4 HOH A 97 597 289 HOH HOH . G 4 HOH A 98 598 18 HOH HOH . G 4 HOH A 99 599 155 HOH HOH . G 4 HOH A 100 600 184 HOH HOH . G 4 HOH A 101 601 21 HOH HOH . G 4 HOH A 102 602 181 HOH HOH . G 4 HOH A 103 603 78 HOH HOH . G 4 HOH A 104 604 288 HOH HOH . G 4 HOH A 105 605 51 HOH HOH . G 4 HOH A 106 606 130 HOH HOH . G 4 HOH A 107 607 120 HOH HOH . G 4 HOH A 108 608 95 HOH HOH . G 4 HOH A 109 609 271 HOH HOH . G 4 HOH A 110 610 124 HOH HOH . G 4 HOH A 111 611 139 HOH HOH . G 4 HOH A 112 612 33 HOH HOH . G 4 HOH A 113 613 17 HOH HOH . G 4 HOH A 114 614 11 HOH HOH . G 4 HOH A 115 615 293 HOH HOH . G 4 HOH A 116 616 77 HOH HOH . G 4 HOH A 117 617 41 HOH HOH . G 4 HOH A 118 618 99 HOH HOH . G 4 HOH A 119 619 79 HOH HOH . G 4 HOH A 120 620 84 HOH HOH . G 4 HOH A 121 621 126 HOH HOH . G 4 HOH A 122 622 113 HOH HOH . G 4 HOH A 123 623 198 HOH HOH . G 4 HOH A 124 624 26 HOH HOH . G 4 HOH A 125 625 71 HOH HOH . G 4 HOH A 126 626 7 HOH HOH . G 4 HOH A 127 627 292 HOH HOH . G 4 HOH A 128 628 172 HOH HOH . G 4 HOH A 129 629 302 HOH HOH . G 4 HOH A 130 630 150 HOH HOH . G 4 HOH A 131 631 223 HOH HOH . G 4 HOH A 132 632 219 HOH HOH . G 4 HOH A 133 633 2 HOH HOH . G 4 HOH A 134 634 168 HOH HOH . G 4 HOH A 135 635 200 HOH HOH . G 4 HOH A 136 636 14 HOH HOH . G 4 HOH A 137 637 128 HOH HOH . G 4 HOH A 138 638 57 HOH HOH . G 4 HOH A 139 639 58 HOH HOH . G 4 HOH A 140 640 251 HOH HOH . G 4 HOH A 141 641 86 HOH HOH . G 4 HOH A 142 642 177 HOH HOH . G 4 HOH A 143 643 46 HOH HOH . G 4 HOH A 144 644 214 HOH HOH . G 4 HOH A 145 645 133 HOH HOH . G 4 HOH A 146 646 8 HOH HOH . G 4 HOH A 147 647 56 HOH HOH . G 4 HOH A 148 648 16 HOH HOH . G 4 HOH A 149 649 66 HOH HOH . G 4 HOH A 150 650 170 HOH HOH . G 4 HOH A 151 651 197 HOH HOH . G 4 HOH A 152 652 275 HOH HOH . G 4 HOH A 153 653 265 HOH HOH . G 4 HOH A 154 654 176 HOH HOH . G 4 HOH A 155 655 208 HOH HOH . G 4 HOH A 156 656 50 HOH HOH . G 4 HOH A 157 657 253 HOH HOH . G 4 HOH A 158 658 282 HOH HOH . G 4 HOH A 159 659 27 HOH HOH . G 4 HOH A 160 660 91 HOH HOH . G 4 HOH A 161 661 107 HOH HOH . G 4 HOH A 162 662 311 HOH HOH . G 4 HOH A 163 663 160 HOH HOH . G 4 HOH A 164 664 242 HOH HOH . G 4 HOH A 165 665 262 HOH HOH . G 4 HOH A 166 666 312 HOH HOH . G 4 HOH A 167 667 22 HOH HOH . G 4 HOH A 168 668 74 HOH HOH . G 4 HOH A 169 669 224 HOH HOH . G 4 HOH A 170 670 45 HOH HOH . G 4 HOH A 171 671 211 HOH HOH . G 4 HOH A 172 672 60 HOH HOH . G 4 HOH A 173 673 63 HOH HOH . G 4 HOH A 174 674 100 HOH HOH . G 4 HOH A 175 675 32 HOH HOH . G 4 HOH A 176 676 162 HOH HOH . G 4 HOH A 177 677 236 HOH HOH . G 4 HOH A 178 678 140 HOH HOH . G 4 HOH A 179 679 131 HOH HOH . G 4 HOH A 180 680 264 HOH HOH . G 4 HOH A 181 681 70 HOH HOH . G 4 HOH A 182 682 49 HOH HOH . G 4 HOH A 183 683 188 HOH HOH . G 4 HOH A 184 684 119 HOH HOH . G 4 HOH A 185 685 106 HOH HOH . G 4 HOH A 186 686 173 HOH HOH . G 4 HOH A 187 687 136 HOH HOH . G 4 HOH A 188 688 138 HOH HOH . G 4 HOH A 189 689 164 HOH HOH . G 4 HOH A 190 690 268 HOH HOH . G 4 HOH A 191 691 94 HOH HOH . G 4 HOH A 192 692 252 HOH HOH . G 4 HOH A 193 693 167 HOH HOH . G 4 HOH A 194 694 237 HOH HOH . G 4 HOH A 195 695 53 HOH HOH . G 4 HOH A 196 696 297 HOH HOH . G 4 HOH A 197 697 298 HOH HOH . G 4 HOH A 198 698 96 HOH HOH . G 4 HOH A 199 699 310 HOH HOH . G 4 HOH A 200 700 122 HOH HOH . G 4 HOH A 201 701 244 HOH HOH . G 4 HOH A 202 702 273 HOH HOH . G 4 HOH A 203 703 185 HOH HOH . G 4 HOH A 204 704 80 HOH HOH . G 4 HOH A 205 705 309 HOH HOH . G 4 HOH A 206 706 220 HOH HOH . G 4 HOH A 207 707 203 HOH HOH . G 4 HOH A 208 708 267 HOH HOH . G 4 HOH A 209 709 307 HOH HOH . G 4 HOH A 210 710 137 HOH HOH . G 4 HOH A 211 711 254 HOH HOH . G 4 HOH A 212 712 191 HOH HOH . G 4 HOH A 213 713 205 HOH HOH . G 4 HOH A 214 714 287 HOH HOH . G 4 HOH A 215 715 277 HOH HOH . G 4 HOH A 216 716 228 HOH HOH . G 4 HOH A 217 717 259 HOH HOH . G 4 HOH A 218 718 116 HOH HOH . G 4 HOH A 219 719 215 HOH HOH . G 4 HOH A 220 720 230 HOH HOH . G 4 HOH A 221 721 73 HOH HOH . G 4 HOH A 222 722 247 HOH HOH . G 4 HOH A 223 723 266 HOH HOH . G 4 HOH A 224 724 159 HOH HOH . G 4 HOH A 225 725 146 HOH HOH . G 4 HOH A 226 726 196 HOH HOH . G 4 HOH A 227 727 105 HOH HOH . G 4 HOH A 228 728 227 HOH HOH . G 4 HOH A 229 729 296 HOH HOH . G 4 HOH A 230 730 132 HOH HOH . G 4 HOH A 231 731 183 HOH HOH . G 4 HOH A 232 732 175 HOH HOH . G 4 HOH A 233 733 285 HOH HOH . G 4 HOH A 234 734 118 HOH HOH . G 4 HOH A 235 735 174 HOH HOH . G 4 HOH A 236 736 151 HOH HOH . G 4 HOH A 237 737 48 HOH HOH . G 4 HOH A 238 738 194 HOH HOH . G 4 HOH A 239 739 127 HOH HOH . G 4 HOH A 240 740 171 HOH HOH . G 4 HOH A 241 741 190 HOH HOH . G 4 HOH A 242 742 216 HOH HOH . G 4 HOH A 243 743 187 HOH HOH . G 4 HOH A 244 744 89 HOH HOH . G 4 HOH A 245 745 299 HOH HOH . G 4 HOH A 246 746 189 HOH HOH . G 4 HOH A 247 747 145 HOH HOH . G 4 HOH A 248 748 231 HOH HOH . G 4 HOH A 249 749 263 HOH HOH . G 4 HOH A 250 750 40 HOH HOH . G 4 HOH A 251 751 69 HOH HOH . G 4 HOH A 252 752 284 HOH HOH . G 4 HOH A 253 753 256 HOH HOH . G 4 HOH A 254 754 97 HOH HOH . G 4 HOH A 255 755 301 HOH HOH . G 4 HOH A 256 756 258 HOH HOH . G 4 HOH A 257 757 295 HOH HOH . G 4 HOH A 258 758 134 HOH HOH . G 4 HOH A 259 759 192 HOH HOH . G 4 HOH A 260 760 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L4U . . . F 3 7.471 0.284 17.394 1 25.22 ? N1 L4U 405 A 1 HETATM 2 C C4 L4U . . . F 3 11.95 -2.769 23.075 1 30.8 ? C4 L4U 405 A 1 HETATM 3 C C5 L4U . . . F 3 10.634 -0.778 22.322 1 28.59 ? C5 L4U 405 A 1 HETATM 4 C C6 L4U . . . F 3 10.028 -0.117 21.107 1 27.16 ? C6 L4U 405 A 1 HETATM 5 C C7 L4U . . . F 3 8.01 -0.123 19.706 1 26.63 ? C7 L4U 405 A 1 HETATM 6 C C8 L4U . . . F 3 8.287 -0.196 18.339 1 26.33 ? C8 L4U 405 A 1 HETATM 7 C C10 L4U . . . F 3 5.959 0.972 19.123 1 25.73 ? C10 L4U 405 A 1 HETATM 8 O O L4U . . . F 3 10.531 0.876 20.6 1 25.04 ? O L4U 405 A 1 HETATM 9 C C3 L4U . . . F 3 11.798 -1.716 21.981 1 29.72 ? C3 L4U 405 A 1 HETATM 10 C C1 L4U . . . F 3 13.111 -0.915 21.719 1 30.16 ? C1 L4U 405 A 1 HETATM 11 C C2 L4U . . . F 3 14.272 -1.784 21.263 1 30.58 ? C2 L4U 405 A 1 HETATM 12 C C L4U . . . F 3 13.523 -0.065 22.91 1 32.2 ? C L4U 405 A 1 HETATM 13 N N L4U . . . F 3 8.884 -0.679 20.674 1 27.06 ? N L4U 405 A 1 HETATM 14 C C11 L4U . . . F 3 6.81 0.504 20.118 1 26.51 ? C11 L4U 405 A 1 HETATM 15 C C12 L4U . . . F 3 6.48 0.726 21.572 1 26.56 ? C12 L4U 405 A 1 HETATM 16 C C9 L4U . . . F 3 6.327 0.849 17.798 1 25.97 ? C9 L4U 405 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #