data_7GC0 # _model_server_result.job_id ZlShI7Ei8TcuevmPrHvwvw _model_server_result.datetime_utc '2024-11-04 18:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GC0 # _exptl.entry_id 7GC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.306 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-N-(4-methylpyridin-3-yl)spiro[2.4]heptane-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.89 _cell.angle_gamma 90 _cell.entry_id 7GC0 _cell.length_a 113.811 _cell.length_b 53.406 _cell.length_c 44.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N2 O' _chem_comp.formula_weight 230.306 _chem_comp.id L4N _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-N-(4-methylpyridin-3-yl)spiro[2.4]heptane-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C3 L4N doub 182 n y N C4 L4N sing 183 n y C3 C2 L4N sing 184 n y C4 C5 L4N doub 185 n y C2 C1 L4N doub 186 n y C5 C1 L4N sing 187 n y C5 N1 L4N sing 188 n n C1 C L4N sing 189 n n O C6 L4N doub 190 n n N1 C6 L4N sing 191 n n C12 C10 L4N sing 192 n n C12 C11 L4N sing 193 n n C6 C7 L4N sing 194 n n C13 C10 L4N sing 195 n n C13 C7 L4N sing 196 n n C10 C11 L4N sing 197 n n C10 C9 L4N sing 198 n n C7 C8 L4N sing 199 n n C9 C8 L4N sing 200 n n N1 H1 L4N sing 201 n n C4 H2 L4N sing 202 n n C7 H3 L4N sing 203 n n C8 H4 L4N sing 204 n n C8 H5 L4N sing 205 n n C13 H6 L4N sing 206 n n C13 H7 L4N sing 207 n n C12 H8 L4N sing 208 n n C12 H9 L4N sing 209 n n C11 H10 L4N sing 210 n n C11 H11 L4N sing 211 n n C9 H12 L4N sing 212 n n C9 H13 L4N sing 213 n n C H14 L4N sing 214 n n C H15 L4N sing 215 n n C H16 L4N sing 216 n n C3 H17 L4N sing 217 n n C2 H18 L4N sing 218 n n # _atom_sites.entry_id 7GC0 _atom_sites.fract_transf_matrix[1][1] 0.008786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00169 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 L4N A 1 404 1101 L4N LIG . F 4 HOH A 1 501 190 HOH HOH . F 4 HOH A 2 502 266 HOH HOH . F 4 HOH A 3 503 134 HOH HOH . F 4 HOH A 4 504 9 HOH HOH . F 4 HOH A 5 505 127 HOH HOH . F 4 HOH A 6 506 250 HOH HOH . F 4 HOH A 7 507 182 HOH HOH . F 4 HOH A 8 508 205 HOH HOH . F 4 HOH A 9 509 27 HOH HOH . F 4 HOH A 10 510 85 HOH HOH . F 4 HOH A 11 511 95 HOH HOH . F 4 HOH A 12 512 33 HOH HOH . F 4 HOH A 13 513 225 HOH HOH . F 4 HOH A 14 514 138 HOH HOH . F 4 HOH A 15 515 90 HOH HOH . F 4 HOH A 16 516 118 HOH HOH . F 4 HOH A 17 517 234 HOH HOH . F 4 HOH A 18 518 129 HOH HOH . F 4 HOH A 19 519 186 HOH HOH . F 4 HOH A 20 520 10 HOH HOH . F 4 HOH A 21 521 32 HOH HOH . F 4 HOH A 22 522 267 HOH HOH . F 4 HOH A 23 523 180 HOH HOH . F 4 HOH A 24 524 148 HOH HOH . F 4 HOH A 25 525 39 HOH HOH . F 4 HOH A 26 526 160 HOH HOH . F 4 HOH A 27 527 19 HOH HOH . F 4 HOH A 28 528 247 HOH HOH . F 4 HOH A 29 529 12 HOH HOH . F 4 HOH A 30 530 51 HOH HOH . F 4 HOH A 31 531 67 HOH HOH . F 4 HOH A 32 532 216 HOH HOH . F 4 HOH A 33 533 100 HOH HOH . F 4 HOH A 34 534 264 HOH HOH . F 4 HOH A 35 535 99 HOH HOH . F 4 HOH A 36 536 58 HOH HOH . F 4 HOH A 37 537 70 HOH HOH . F 4 HOH A 38 538 157 HOH HOH . F 4 HOH A 39 539 20 HOH HOH . F 4 HOH A 40 540 35 HOH HOH . F 4 HOH A 41 541 104 HOH HOH . F 4 HOH A 42 542 162 HOH HOH . F 4 HOH A 43 543 144 HOH HOH . F 4 HOH A 44 544 50 HOH HOH . F 4 HOH A 45 545 202 HOH HOH . F 4 HOH A 46 546 25 HOH HOH . F 4 HOH A 47 547 143 HOH HOH . F 4 HOH A 48 548 137 HOH HOH . F 4 HOH A 49 549 257 HOH HOH . F 4 HOH A 50 550 93 HOH HOH . F 4 HOH A 51 551 23 HOH HOH . F 4 HOH A 52 552 15 HOH HOH . F 4 HOH A 53 553 94 HOH HOH . F 4 HOH A 54 554 243 HOH HOH . F 4 HOH A 55 555 63 HOH HOH . F 4 HOH A 56 556 133 HOH HOH . F 4 HOH A 57 557 49 HOH HOH . F 4 HOH A 58 558 29 HOH HOH . F 4 HOH A 59 559 204 HOH HOH . F 4 HOH A 60 560 212 HOH HOH . F 4 HOH A 61 561 4 HOH HOH . F 4 HOH A 62 562 36 HOH HOH . F 4 HOH A 63 563 227 HOH HOH . F 4 HOH A 64 564 224 HOH HOH . F 4 HOH A 65 565 75 HOH HOH . F 4 HOH A 66 566 78 HOH HOH . F 4 HOH A 67 567 122 HOH HOH . F 4 HOH A 68 568 57 HOH HOH . F 4 HOH A 69 569 71 HOH HOH . F 4 HOH A 70 570 187 HOH HOH . F 4 HOH A 71 571 1 HOH HOH . F 4 HOH A 72 572 229 HOH HOH . F 4 HOH A 73 573 69 HOH HOH . F 4 HOH A 74 574 41 HOH HOH . F 4 HOH A 75 575 262 HOH HOH . F 4 HOH A 76 576 147 HOH HOH . F 4 HOH A 77 577 177 HOH HOH . F 4 HOH A 78 578 61 HOH HOH . F 4 HOH A 79 579 113 HOH HOH . F 4 HOH A 80 580 11 HOH HOH . F 4 HOH A 81 581 48 HOH HOH . F 4 HOH A 82 582 260 HOH HOH . F 4 HOH A 83 583 74 HOH HOH . F 4 HOH A 84 584 60 HOH HOH . F 4 HOH A 85 585 173 HOH HOH . F 4 HOH A 86 586 269 HOH HOH . F 4 HOH A 87 587 128 HOH HOH . F 4 HOH A 88 588 126 HOH HOH . F 4 HOH A 89 589 208 HOH HOH . F 4 HOH A 90 590 199 HOH HOH . F 4 HOH A 91 591 244 HOH HOH . F 4 HOH A 92 592 62 HOH HOH . F 4 HOH A 93 593 14 HOH HOH . F 4 HOH A 94 594 3 HOH HOH . F 4 HOH A 95 595 248 HOH HOH . F 4 HOH A 96 596 142 HOH HOH . F 4 HOH A 97 597 107 HOH HOH . F 4 HOH A 98 598 101 HOH HOH . F 4 HOH A 99 599 40 HOH HOH . F 4 HOH A 100 600 145 HOH HOH . F 4 HOH A 101 601 158 HOH HOH . F 4 HOH A 102 602 164 HOH HOH . F 4 HOH A 103 603 154 HOH HOH . F 4 HOH A 104 604 5 HOH HOH . F 4 HOH A 105 605 53 HOH HOH . F 4 HOH A 106 606 252 HOH HOH . F 4 HOH A 107 607 203 HOH HOH . F 4 HOH A 108 608 83 HOH HOH . F 4 HOH A 109 609 24 HOH HOH . F 4 HOH A 110 610 6 HOH HOH . F 4 HOH A 111 611 102 HOH HOH . F 4 HOH A 112 612 228 HOH HOH . F 4 HOH A 113 613 220 HOH HOH . F 4 HOH A 114 614 117 HOH HOH . F 4 HOH A 115 615 76 HOH HOH . F 4 HOH A 116 616 18 HOH HOH . F 4 HOH A 117 617 28 HOH HOH . F 4 HOH A 118 618 91 HOH HOH . F 4 HOH A 119 619 72 HOH HOH . F 4 HOH A 120 620 38 HOH HOH . F 4 HOH A 121 621 258 HOH HOH . F 4 HOH A 122 622 16 HOH HOH . F 4 HOH A 123 623 139 HOH HOH . F 4 HOH A 124 624 34 HOH HOH . F 4 HOH A 125 625 81 HOH HOH . F 4 HOH A 126 626 259 HOH HOH . F 4 HOH A 127 627 86 HOH HOH . F 4 HOH A 128 628 184 HOH HOH . F 4 HOH A 129 629 241 HOH HOH . F 4 HOH A 130 630 80 HOH HOH . F 4 HOH A 131 631 242 HOH HOH . F 4 HOH A 132 632 255 HOH HOH . F 4 HOH A 133 633 112 HOH HOH . F 4 HOH A 134 634 231 HOH HOH . F 4 HOH A 135 635 183 HOH HOH . F 4 HOH A 136 636 110 HOH HOH . F 4 HOH A 137 637 114 HOH HOH . F 4 HOH A 138 638 135 HOH HOH . F 4 HOH A 139 639 31 HOH HOH . F 4 HOH A 140 640 149 HOH HOH . F 4 HOH A 141 641 87 HOH HOH . F 4 HOH A 142 642 13 HOH HOH . F 4 HOH A 143 643 253 HOH HOH . F 4 HOH A 144 644 150 HOH HOH . F 4 HOH A 145 645 17 HOH HOH . F 4 HOH A 146 646 249 HOH HOH . F 4 HOH A 147 647 174 HOH HOH . F 4 HOH A 148 648 54 HOH HOH . F 4 HOH A 149 649 2 HOH HOH . F 4 HOH A 150 650 77 HOH HOH . F 4 HOH A 151 651 59 HOH HOH . F 4 HOH A 152 652 116 HOH HOH . F 4 HOH A 153 653 26 HOH HOH . F 4 HOH A 154 654 191 HOH HOH . F 4 HOH A 155 655 176 HOH HOH . F 4 HOH A 156 656 120 HOH HOH . F 4 HOH A 157 657 65 HOH HOH . F 4 HOH A 158 658 55 HOH HOH . F 4 HOH A 159 659 125 HOH HOH . F 4 HOH A 160 660 237 HOH HOH . F 4 HOH A 161 661 251 HOH HOH . F 4 HOH A 162 662 7 HOH HOH . F 4 HOH A 163 663 232 HOH HOH . F 4 HOH A 164 664 181 HOH HOH . F 4 HOH A 165 665 92 HOH HOH . F 4 HOH A 166 666 66 HOH HOH . F 4 HOH A 167 667 221 HOH HOH . F 4 HOH A 168 668 156 HOH HOH . F 4 HOH A 169 669 238 HOH HOH . F 4 HOH A 170 670 235 HOH HOH . F 4 HOH A 171 671 226 HOH HOH . F 4 HOH A 172 672 47 HOH HOH . F 4 HOH A 173 673 30 HOH HOH . F 4 HOH A 174 674 123 HOH HOH . F 4 HOH A 175 675 68 HOH HOH . F 4 HOH A 176 676 84 HOH HOH . F 4 HOH A 177 677 188 HOH HOH . F 4 HOH A 178 678 152 HOH HOH . F 4 HOH A 179 679 43 HOH HOH . F 4 HOH A 180 680 209 HOH HOH . F 4 HOH A 181 681 192 HOH HOH . F 4 HOH A 182 682 79 HOH HOH . F 4 HOH A 183 683 189 HOH HOH . F 4 HOH A 184 684 44 HOH HOH . F 4 HOH A 185 685 151 HOH HOH . F 4 HOH A 186 686 98 HOH HOH . F 4 HOH A 187 687 52 HOH HOH . F 4 HOH A 188 688 42 HOH HOH . F 4 HOH A 189 689 97 HOH HOH . F 4 HOH A 190 690 22 HOH HOH . F 4 HOH A 191 691 8 HOH HOH . F 4 HOH A 192 692 56 HOH HOH . F 4 HOH A 193 693 111 HOH HOH . F 4 HOH A 194 694 109 HOH HOH . F 4 HOH A 195 695 261 HOH HOH . F 4 HOH A 196 696 240 HOH HOH . F 4 HOH A 197 697 88 HOH HOH . F 4 HOH A 198 698 119 HOH HOH . F 4 HOH A 199 699 140 HOH HOH . F 4 HOH A 200 700 265 HOH HOH . F 4 HOH A 201 701 223 HOH HOH . F 4 HOH A 202 702 195 HOH HOH . F 4 HOH A 203 703 132 HOH HOH . F 4 HOH A 204 704 168 HOH HOH . F 4 HOH A 205 705 21 HOH HOH . F 4 HOH A 206 706 218 HOH HOH . F 4 HOH A 207 707 106 HOH HOH . F 4 HOH A 208 708 166 HOH HOH . F 4 HOH A 209 709 179 HOH HOH . F 4 HOH A 210 710 200 HOH HOH . F 4 HOH A 211 711 46 HOH HOH . F 4 HOH A 212 712 159 HOH HOH . F 4 HOH A 213 713 233 HOH HOH . F 4 HOH A 214 714 105 HOH HOH . F 4 HOH A 215 715 201 HOH HOH . F 4 HOH A 216 716 172 HOH HOH . F 4 HOH A 217 717 206 HOH HOH . F 4 HOH A 218 718 217 HOH HOH . F 4 HOH A 219 719 103 HOH HOH . F 4 HOH A 220 720 256 HOH HOH . F 4 HOH A 221 721 207 HOH HOH . F 4 HOH A 222 722 178 HOH HOH . F 4 HOH A 223 723 268 HOH HOH . F 4 HOH A 224 724 185 HOH HOH . F 4 HOH A 225 725 73 HOH HOH . F 4 HOH A 226 726 211 HOH HOH . F 4 HOH A 227 727 161 HOH HOH . F 4 HOH A 228 728 215 HOH HOH . F 4 HOH A 229 729 194 HOH HOH . F 4 HOH A 230 730 146 HOH HOH . F 4 HOH A 231 731 169 HOH HOH . F 4 HOH A 232 732 124 HOH HOH . F 4 HOH A 233 733 196 HOH HOH . F 4 HOH A 234 734 136 HOH HOH . F 4 HOH A 235 735 210 HOH HOH . F 4 HOH A 236 736 165 HOH HOH . F 4 HOH A 237 737 198 HOH HOH . F 4 HOH A 238 738 171 HOH HOH . F 4 HOH A 239 739 141 HOH HOH . F 4 HOH A 240 740 197 HOH HOH . F 4 HOH A 241 741 222 HOH HOH . F 4 HOH A 242 742 96 HOH HOH . F 4 HOH A 243 743 153 HOH HOH . F 4 HOH A 244 744 163 HOH HOH . F 4 HOH A 245 745 219 HOH HOH . F 4 HOH A 246 746 175 HOH HOH . F 4 HOH A 247 747 45 HOH HOH . F 4 HOH A 248 748 131 HOH HOH . F 4 HOH A 249 749 230 HOH HOH . F 4 HOH A 250 750 245 HOH HOH . F 4 HOH A 251 751 82 HOH HOH . F 4 HOH A 252 752 108 HOH HOH . F 4 HOH A 253 753 37 HOH HOH . F 4 HOH A 254 754 167 HOH HOH . F 4 HOH A 255 755 263 HOH HOH . F 4 HOH A 256 756 130 HOH HOH . F 4 HOH A 257 757 214 HOH HOH . F 4 HOH A 258 758 193 HOH HOH . F 4 HOH A 259 759 155 HOH HOH . F 4 HOH A 260 760 254 HOH HOH . F 4 HOH A 261 761 64 HOH HOH . F 4 HOH A 262 762 115 HOH HOH . F 4 HOH A 263 763 239 HOH HOH . F 4 HOH A 264 764 236 HOH HOH . F 4 HOH A 265 765 121 HOH HOH . F 4 HOH A 266 766 246 HOH HOH . F 4 HOH A 267 767 213 HOH HOH . F 4 HOH A 268 768 89 HOH HOH . F 4 HOH A 269 769 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L4N . . . E 3 8.883 -0.566 20.967 0.88 20.48 ? N1 L4N 404 A 1 HETATM 2 C C4 L4N . . . E 3 8.359 -0.122 18.614 0.88 19.18 ? C4 L4N 404 A 1 HETATM 3 C C5 L4N . . . E 3 8.007 -0.097 19.965 0.88 19.73 ? C5 L4N 404 A 1 HETATM 4 C C6 L4N . . . E 3 10.061 0.014 21.267 0.88 21.27 ? C6 L4N 404 A 1 HETATM 5 C C7 L4N . . . E 3 10.805 -0.644 22.396 0.88 22.9 ? C7 L4N 404 A 1 HETATM 6 C C8 L4N . . . E 3 11.511 0.369 23.319 0.88 23.65 ? C8 L4N 404 A 1 HETATM 7 C C10 L4N . . . E 3 13.192 -0.958 22.154 0.88 24.17 ? C10 L4N 404 A 1 HETATM 8 C C13 L4N . . . E 3 11.841 -1.661 21.907 0.88 23.54 ? C13 L4N 404 A 1 HETATM 9 O O L4N . . . E 3 10.507 0.996 20.675 0.88 20.27 ? O L4N 404 A 1 HETATM 10 C C12 L4N . . . E 3 14.299 -1.097 21.162 0.88 24.5 ? C12 L4N 404 A 1 HETATM 11 C C11 L4N . . . E 3 14.401 -1.759 22.511 0.88 24.34 ? C11 L4N 404 A 1 HETATM 12 C C9 L4N . . . E 3 12.971 0.414 22.836 0.88 24.36 ? C9 L4N 404 A 1 HETATM 13 C C1 L4N . . . E 3 6.767 0.454 20.334 0.88 19.63 ? C1 L4N 404 A 1 HETATM 14 C C L4N . . . E 3 6.344 0.58 21.777 0.88 19.78 ? C L4N 404 A 1 HETATM 15 N N L4N . . . E 3 7.575 0.361 17.642 0.88 18.95 ? N L4N 404 A 1 HETATM 16 C C3 L4N . . . E 3 6.395 0.879 18.005 0.88 19.05 ? C3 L4N 404 A 1 HETATM 17 C C2 L4N . . . E 3 5.957 0.94 19.314 0.88 19.15 ? C2 L4N 404 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #