data_7GC2 # _model_server_result.job_id ogmdw2EjpcEMq9QwfiK4XQ _model_server_result.datetime_utc '2024-11-04 18:38:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GC2 # _exptl.entry_id 7GC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-N-(4-methylpyridin-3-yl)-3-phenylbutanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.28 _cell.angle_gamma 90 _cell.entry_id 7GC2 _cell.length_a 113.694 _cell.length_b 53.449 _cell.length_c 44.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N2 O' _chem_comp.formula_weight 268.354 _chem_comp.id L7Q _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-N-(4-methylpyridin-3-yl)-3-phenylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N L7Q doub 182 n y C3 C2 L7Q sing 183 n y N C4 L7Q sing 184 n y C2 C1 L7Q doub 185 n y C4 C5 L7Q doub 186 n y C1 C5 L7Q sing 187 n y C1 C L7Q sing 188 n n C5 N1 L7Q sing 189 n n O C6 L7Q doub 190 n n N1 C6 L7Q sing 191 n n C6 C7 L7Q sing 192 n n C13 C12 L7Q doub 193 n y C13 C14 L7Q sing 194 n y C12 C11 L7Q sing 195 n y C9 C8 L7Q sing 196 n n C14 C15 L7Q doub 197 n y C11 C8 L7Q sing 198 n n C11 C16 L7Q doub 199 n y C7 C8 L7Q sing 200 n n C8 C10 L7Q sing 201 n n C15 C16 L7Q sing 202 n y N1 H1 L7Q sing 203 n n C4 H2 L7Q sing 204 n n C7 H3 L7Q sing 205 n n C7 H4 L7Q sing 206 n n C10 H5 L7Q sing 207 n n C10 H6 L7Q sing 208 n n C10 H7 L7Q sing 209 n n C13 H8 L7Q sing 210 n n C15 H9 L7Q sing 211 n n C3 H10 L7Q sing 212 n n C2 H11 L7Q sing 213 n n C H12 L7Q sing 214 n n C H13 L7Q sing 215 n n C H14 L7Q sing 216 n n C9 H15 L7Q sing 217 n n C9 H16 L7Q sing 218 n n C9 H17 L7Q sing 219 n n C16 H18 L7Q sing 220 n n C14 H19 L7Q sing 221 n n C12 H20 L7Q sing 222 n n # _atom_sites.entry_id 7GC2 _atom_sites.fract_transf_matrix[1][1] 0.008796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 L7Q A 1 404 1101 L7Q LIG . F 4 HOH A 1 501 269 HOH HOH . F 4 HOH A 2 502 29 HOH HOH . F 4 HOH A 3 503 165 HOH HOH . F 4 HOH A 4 504 236 HOH HOH . F 4 HOH A 5 505 34 HOH HOH . F 4 HOH A 6 506 104 HOH HOH . F 4 HOH A 7 507 149 HOH HOH . F 4 HOH A 8 508 291 HOH HOH . F 4 HOH A 9 509 22 HOH HOH . F 4 HOH A 10 510 9 HOH HOH . F 4 HOH A 11 511 12 HOH HOH . F 4 HOH A 12 512 35 HOH HOH . F 4 HOH A 13 513 62 HOH HOH . F 4 HOH A 14 514 20 HOH HOH . F 4 HOH A 15 515 10 HOH HOH . F 4 HOH A 16 516 110 HOH HOH . F 4 HOH A 17 517 81 HOH HOH . F 4 HOH A 18 518 115 HOH HOH . F 4 HOH A 19 519 98 HOH HOH . F 4 HOH A 20 520 218 HOH HOH . F 4 HOH A 21 521 83 HOH HOH . F 4 HOH A 22 522 68 HOH HOH . F 4 HOH A 23 523 144 HOH HOH . F 4 HOH A 24 524 24 HOH HOH . F 4 HOH A 25 525 72 HOH HOH . F 4 HOH A 26 526 217 HOH HOH . F 4 HOH A 27 527 121 HOH HOH . F 4 HOH A 28 528 93 HOH HOH . F 4 HOH A 29 529 44 HOH HOH . F 4 HOH A 30 530 92 HOH HOH . F 4 HOH A 31 531 130 HOH HOH . F 4 HOH A 32 532 114 HOH HOH . F 4 HOH A 33 533 268 HOH HOH . F 4 HOH A 34 534 207 HOH HOH . F 4 HOH A 35 535 142 HOH HOH . F 4 HOH A 36 536 55 HOH HOH . F 4 HOH A 37 537 52 HOH HOH . F 4 HOH A 38 538 76 HOH HOH . F 4 HOH A 39 539 288 HOH HOH . F 4 HOH A 40 540 1 HOH HOH . F 4 HOH A 41 541 101 HOH HOH . F 4 HOH A 42 542 184 HOH HOH . F 4 HOH A 43 543 264 HOH HOH . F 4 HOH A 44 544 42 HOH HOH . F 4 HOH A 45 545 238 HOH HOH . F 4 HOH A 46 546 21 HOH HOH . F 4 HOH A 47 547 112 HOH HOH . F 4 HOH A 48 548 27 HOH HOH . F 4 HOH A 49 549 276 HOH HOH . F 4 HOH A 50 550 152 HOH HOH . F 4 HOH A 51 551 43 HOH HOH . F 4 HOH A 52 552 161 HOH HOH . F 4 HOH A 53 553 123 HOH HOH . F 4 HOH A 54 554 167 HOH HOH . F 4 HOH A 55 555 61 HOH HOH . F 4 HOH A 56 556 64 HOH HOH . F 4 HOH A 57 557 71 HOH HOH . F 4 HOH A 58 558 85 HOH HOH . F 4 HOH A 59 559 143 HOH HOH . F 4 HOH A 60 560 182 HOH HOH . F 4 HOH A 61 561 3 HOH HOH . F 4 HOH A 62 562 79 HOH HOH . F 4 HOH A 63 563 176 HOH HOH . F 4 HOH A 64 564 274 HOH HOH . F 4 HOH A 65 565 19 HOH HOH . F 4 HOH A 66 566 41 HOH HOH . F 4 HOH A 67 567 111 HOH HOH . F 4 HOH A 68 568 39 HOH HOH . F 4 HOH A 69 569 75 HOH HOH . F 4 HOH A 70 570 147 HOH HOH . F 4 HOH A 71 571 172 HOH HOH . F 4 HOH A 72 572 54 HOH HOH . F 4 HOH A 73 573 148 HOH HOH . F 4 HOH A 74 574 271 HOH HOH . F 4 HOH A 75 575 31 HOH HOH . F 4 HOH A 76 576 6 HOH HOH . F 4 HOH A 77 577 59 HOH HOH . F 4 HOH A 78 578 260 HOH HOH . F 4 HOH A 79 579 66 HOH HOH . F 4 HOH A 80 580 242 HOH HOH . F 4 HOH A 81 581 4 HOH HOH . F 4 HOH A 82 582 84 HOH HOH . F 4 HOH A 83 583 78 HOH HOH . F 4 HOH A 84 584 166 HOH HOH . F 4 HOH A 85 585 37 HOH HOH . F 4 HOH A 86 586 126 HOH HOH . F 4 HOH A 87 587 249 HOH HOH . F 4 HOH A 88 588 15 HOH HOH . F 4 HOH A 89 589 129 HOH HOH . F 4 HOH A 90 590 14 HOH HOH . F 4 HOH A 91 591 155 HOH HOH . F 4 HOH A 92 592 108 HOH HOH . F 4 HOH A 93 593 86 HOH HOH . F 4 HOH A 94 594 162 HOH HOH . F 4 HOH A 95 595 284 HOH HOH . F 4 HOH A 96 596 30 HOH HOH . F 4 HOH A 97 597 5 HOH HOH . F 4 HOH A 98 598 186 HOH HOH . F 4 HOH A 99 599 141 HOH HOH . F 4 HOH A 100 600 51 HOH HOH . F 4 HOH A 101 601 214 HOH HOH . F 4 HOH A 102 602 117 HOH HOH . F 4 HOH A 103 603 11 HOH HOH . F 4 HOH A 104 604 82 HOH HOH . F 4 HOH A 105 605 17 HOH HOH . F 4 HOH A 106 606 26 HOH HOH . F 4 HOH A 107 607 135 HOH HOH . F 4 HOH A 108 608 28 HOH HOH . F 4 HOH A 109 609 57 HOH HOH . F 4 HOH A 110 610 243 HOH HOH . F 4 HOH A 111 611 38 HOH HOH . F 4 HOH A 112 612 18 HOH HOH . F 4 HOH A 113 613 168 HOH HOH . F 4 HOH A 114 614 157 HOH HOH . F 4 HOH A 115 615 153 HOH HOH . F 4 HOH A 116 616 124 HOH HOH . F 4 HOH A 117 617 47 HOH HOH . F 4 HOH A 118 618 13 HOH HOH . F 4 HOH A 119 619 96 HOH HOH . F 4 HOH A 120 620 88 HOH HOH . F 4 HOH A 121 621 16 HOH HOH . F 4 HOH A 122 622 125 HOH HOH . F 4 HOH A 123 623 58 HOH HOH . F 4 HOH A 124 624 87 HOH HOH . F 4 HOH A 125 625 7 HOH HOH . F 4 HOH A 126 626 102 HOH HOH . F 4 HOH A 127 627 251 HOH HOH . F 4 HOH A 128 628 91 HOH HOH . F 4 HOH A 129 629 239 HOH HOH . F 4 HOH A 130 630 95 HOH HOH . F 4 HOH A 131 631 223 HOH HOH . F 4 HOH A 132 632 80 HOH HOH . F 4 HOH A 133 633 139 HOH HOH . F 4 HOH A 134 634 150 HOH HOH . F 4 HOH A 135 635 99 HOH HOH . F 4 HOH A 136 636 2 HOH HOH . F 4 HOH A 137 637 275 HOH HOH . F 4 HOH A 138 638 45 HOH HOH . F 4 HOH A 139 639 100 HOH HOH . F 4 HOH A 140 640 60 HOH HOH . F 4 HOH A 141 641 90 HOH HOH . F 4 HOH A 142 642 56 HOH HOH . F 4 HOH A 143 643 219 HOH HOH . F 4 HOH A 144 644 33 HOH HOH . F 4 HOH A 145 645 74 HOH HOH . F 4 HOH A 146 646 107 HOH HOH . F 4 HOH A 147 647 32 HOH HOH . F 4 HOH A 148 648 287 HOH HOH . F 4 HOH A 149 649 106 HOH HOH . F 4 HOH A 150 650 160 HOH HOH . F 4 HOH A 151 651 8 HOH HOH . F 4 HOH A 152 652 198 HOH HOH . F 4 HOH A 153 653 23 HOH HOH . F 4 HOH A 154 654 133 HOH HOH . F 4 HOH A 155 655 70 HOH HOH . F 4 HOH A 156 656 140 HOH HOH . F 4 HOH A 157 657 244 HOH HOH . F 4 HOH A 158 658 50 HOH HOH . F 4 HOH A 159 659 180 HOH HOH . F 4 HOH A 160 660 46 HOH HOH . F 4 HOH A 161 661 206 HOH HOH . F 4 HOH A 162 662 289 HOH HOH . F 4 HOH A 163 663 200 HOH HOH . F 4 HOH A 164 664 163 HOH HOH . F 4 HOH A 165 665 290 HOH HOH . F 4 HOH A 166 666 265 HOH HOH . F 4 HOH A 167 667 63 HOH HOH . F 4 HOH A 168 668 169 HOH HOH . F 4 HOH A 169 669 208 HOH HOH . F 4 HOH A 170 670 131 HOH HOH . F 4 HOH A 171 671 213 HOH HOH . F 4 HOH A 172 672 201 HOH HOH . F 4 HOH A 173 673 178 HOH HOH . F 4 HOH A 174 674 261 HOH HOH . F 4 HOH A 175 675 234 HOH HOH . F 4 HOH A 176 676 113 HOH HOH . F 4 HOH A 177 677 267 HOH HOH . F 4 HOH A 178 678 49 HOH HOH . F 4 HOH A 179 679 188 HOH HOH . F 4 HOH A 180 680 281 HOH HOH . F 4 HOH A 181 681 278 HOH HOH . F 4 HOH A 182 682 136 HOH HOH . F 4 HOH A 183 683 282 HOH HOH . F 4 HOH A 184 684 220 HOH HOH . F 4 HOH A 185 685 252 HOH HOH . F 4 HOH A 186 686 120 HOH HOH . F 4 HOH A 187 687 190 HOH HOH . F 4 HOH A 188 688 122 HOH HOH . F 4 HOH A 189 689 263 HOH HOH . F 4 HOH A 190 690 228 HOH HOH . F 4 HOH A 191 691 255 HOH HOH . F 4 HOH A 192 692 171 HOH HOH . F 4 HOH A 193 693 216 HOH HOH . F 4 HOH A 194 694 203 HOH HOH . F 4 HOH A 195 695 237 HOH HOH . F 4 HOH A 196 696 250 HOH HOH . F 4 HOH A 197 697 233 HOH HOH . F 4 HOH A 198 698 191 HOH HOH . F 4 HOH A 199 699 164 HOH HOH . F 4 HOH A 200 700 215 HOH HOH . F 4 HOH A 201 701 283 HOH HOH . F 4 HOH A 202 702 116 HOH HOH . F 4 HOH A 203 703 221 HOH HOH . F 4 HOH A 204 704 254 HOH HOH . F 4 HOH A 205 705 183 HOH HOH . F 4 HOH A 206 706 137 HOH HOH . F 4 HOH A 207 707 277 HOH HOH . F 4 HOH A 208 708 259 HOH HOH . F 4 HOH A 209 709 159 HOH HOH . F 4 HOH A 210 710 196 HOH HOH . F 4 HOH A 211 711 194 HOH HOH . F 4 HOH A 212 712 118 HOH HOH . F 4 HOH A 213 713 266 HOH HOH . F 4 HOH A 214 714 185 HOH HOH . F 4 HOH A 215 715 230 HOH HOH . F 4 HOH A 216 716 48 HOH HOH . F 4 HOH A 217 717 89 HOH HOH . F 4 HOH A 218 718 105 HOH HOH . F 4 HOH A 219 719 195 HOH HOH . F 4 HOH A 220 720 227 HOH HOH . F 4 HOH A 221 721 146 HOH HOH . F 4 HOH A 222 722 187 HOH HOH . F 4 HOH A 223 723 189 HOH HOH . F 4 HOH A 224 724 145 HOH HOH . F 4 HOH A 225 725 226 HOH HOH . F 4 HOH A 226 726 235 HOH HOH . F 4 HOH A 227 727 69 HOH HOH . F 4 HOH A 228 728 285 HOH HOH . F 4 HOH A 229 729 40 HOH HOH . F 4 HOH A 230 730 231 HOH HOH . F 4 HOH A 231 731 286 HOH HOH . F 4 HOH A 232 732 256 HOH HOH . F 4 HOH A 233 733 258 HOH HOH . F 4 HOH A 234 734 199 HOH HOH . F 4 HOH A 235 735 97 HOH HOH . F 4 HOH A 236 736 127 HOH HOH . F 4 HOH A 237 737 192 HOH HOH . F 4 HOH A 238 738 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L7Q . . . E 3 7.778 0.111 21.106 0.86 37.97 ? N1 L7Q 404 A 1 HETATM 2 C C4 L7Q . . . E 3 7.85 -0.003 18.643 0.86 35.52 ? C4 L7Q 404 A 1 HETATM 3 C C5 L7Q . . . E 3 7.168 0.247 19.835 0.86 36.56 ? C5 L7Q 404 A 1 HETATM 4 C C6 L7Q . . . E 3 9.084 0.091 21.444 0.86 38.36 ? C6 L7Q 404 A 1 HETATM 5 C C7 L7Q . . . E 3 9.357 -0.432 22.839 0.86 39.2 ? C7 L7Q 404 A 1 HETATM 6 C C8 L7Q . . . E 3 10.453 -1.525 22.935 0.86 39.65 ? C8 L7Q 404 A 1 HETATM 7 C C10 L7Q . . . E 3 10.365 -2.187 24.315 0.86 39.68 ? C10 L7Q 404 A 1 HETATM 8 C C13 L7Q . . . E 3 13.958 -0.757 21.592 0.86 39.89 ? C13 L7Q 404 A 1 HETATM 9 C C15 L7Q . . . E 3 13.441 0.828 23.298 0.86 39.92 ? C15 L7Q 404 A 1 HETATM 10 O O L7Q . . . E 3 9.979 0.532 20.729 0.86 37.73 ? O L7Q 404 A 1 HETATM 11 N N L7Q . . . E 3 7.415 0.386 17.44 0.86 34.8 ? N L7Q 404 A 1 HETATM 12 C C3 L7Q . . . E 3 6.257 1.049 17.394 0.86 34.98 ? C3 L7Q 404 A 1 HETATM 13 C C2 L7Q . . . E 3 5.496 1.329 18.509 0.86 35.57 ? C2 L7Q 404 A 1 HETATM 14 C C1 L7Q . . . E 3 5.934 0.918 19.765 0.86 36.03 ? C1 L7Q 404 A 1 HETATM 15 C C L7Q . . . E 3 5.124 1.229 20.997 0.86 36.52 ? C L7Q 404 A 1 HETATM 16 C C9 L7Q . . . E 3 10.14 -2.605 21.888 0.86 40.02 ? C9 L7Q 404 A 1 HETATM 17 C C11 L7Q . . . E 3 11.837 -0.891 22.743 0.86 39.67 ? C11 L7Q 404 A 1 HETATM 18 C C16 L7Q . . . E 3 12.217 0.211 23.505 0.86 39.73 ? C16 L7Q 404 A 1 HETATM 19 C C14 L7Q . . . E 3 14.309 0.345 22.34 0.86 39.95 ? C14 L7Q 404 A 1 HETATM 20 C C12 L7Q . . . E 3 12.73 -1.37 21.786 0.86 39.71 ? C12 L7Q 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #