data_7GC8 # _model_server_result.job_id TNOUZp0WCyrOpw9Y98pOyg _model_server_result.datetime_utc '2024-11-21 11:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GC8 # _exptl.entry_id 7GC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.68 _cell.angle_gamma 90 _cell.entry_id 7GC8 _cell.length_a 113.557 _cell.length_b 53.461 _cell.length_c 44.495 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GC8 _atom_sites.fract_transf_matrix[1][1] 0.008806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00182 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 L9F A 1 404 4000 L9F LIG . F 4 HOH A 1 501 9 HOH HOH . F 4 HOH A 2 502 92 HOH HOH . F 4 HOH A 3 503 35 HOH HOH . F 4 HOH A 4 504 29 HOH HOH . F 4 HOH A 5 505 142 HOH HOH . F 4 HOH A 6 506 292 HOH HOH . F 4 HOH A 7 507 260 HOH HOH . F 4 HOH A 8 508 109 HOH HOH . F 4 HOH A 9 509 111 HOH HOH . F 4 HOH A 10 510 186 HOH HOH . F 4 HOH A 11 511 165 HOH HOH . F 4 HOH A 12 512 149 HOH HOH . F 4 HOH A 13 513 269 HOH HOH . F 4 HOH A 14 514 104 HOH HOH . F 4 HOH A 15 515 62 HOH HOH . F 4 HOH A 16 516 141 HOH HOH . F 4 HOH A 17 517 243 HOH HOH . F 4 HOH A 18 518 72 HOH HOH . F 4 HOH A 19 519 248 HOH HOH . F 4 HOH A 20 520 44 HOH HOH . F 4 HOH A 21 521 39 HOH HOH . F 4 HOH A 22 522 34 HOH HOH . F 4 HOH A 23 523 67 HOH HOH . F 4 HOH A 24 524 98 HOH HOH . F 4 HOH A 25 525 1 HOH HOH . F 4 HOH A 26 526 64 HOH HOH . F 4 HOH A 27 527 102 HOH HOH . F 4 HOH A 28 528 115 HOH HOH . F 4 HOH A 29 529 207 HOH HOH . F 4 HOH A 30 530 10 HOH HOH . F 4 HOH A 31 531 76 HOH HOH . F 4 HOH A 32 532 81 HOH HOH . F 4 HOH A 33 533 43 HOH HOH . F 4 HOH A 34 534 24 HOH HOH . F 4 HOH A 35 535 52 HOH HOH . F 4 HOH A 36 536 182 HOH HOH . F 4 HOH A 37 537 96 HOH HOH . F 4 HOH A 38 538 86 HOH HOH . F 4 HOH A 39 539 33 HOH HOH . F 4 HOH A 40 540 66 HOH HOH . F 4 HOH A 41 541 75 HOH HOH . F 4 HOH A 42 542 55 HOH HOH . F 4 HOH A 43 543 61 HOH HOH . F 4 HOH A 44 544 4 HOH HOH . F 4 HOH A 45 545 217 HOH HOH . F 4 HOH A 46 546 20 HOH HOH . F 4 HOH A 47 547 82 HOH HOH . F 4 HOH A 48 548 161 HOH HOH . F 4 HOH A 49 549 152 HOH HOH . F 4 HOH A 50 550 3 HOH HOH . F 4 HOH A 51 551 54 HOH HOH . F 4 HOH A 52 552 68 HOH HOH . F 4 HOH A 53 553 126 HOH HOH . F 4 HOH A 54 554 83 HOH HOH . F 4 HOH A 55 555 268 HOH HOH . F 4 HOH A 56 556 37 HOH HOH . F 4 HOH A 57 557 114 HOH HOH . F 4 HOH A 58 558 232 HOH HOH . F 4 HOH A 59 559 124 HOH HOH . F 4 HOH A 60 560 12 HOH HOH . F 4 HOH A 61 561 288 HOH HOH . F 4 HOH A 62 562 88 HOH HOH . F 4 HOH A 63 563 147 HOH HOH . F 4 HOH A 64 564 218 HOH HOH . F 4 HOH A 65 565 78 HOH HOH . F 4 HOH A 66 566 47 HOH HOH . F 4 HOH A 67 567 153 HOH HOH . F 4 HOH A 68 568 17 HOH HOH . F 4 HOH A 69 569 163 HOH HOH . F 4 HOH A 70 570 271 HOH HOH . F 4 HOH A 71 571 264 HOH HOH . F 4 HOH A 72 572 87 HOH HOH . F 4 HOH A 73 573 144 HOH HOH . F 4 HOH A 74 574 26 HOH HOH . F 4 HOH A 75 575 184 HOH HOH . F 4 HOH A 76 576 275 HOH HOH . F 4 HOH A 77 577 19 HOH HOH . F 4 HOH A 78 578 214 HOH HOH . F 4 HOH A 79 579 6 HOH HOH . F 4 HOH A 80 580 28 HOH HOH . F 4 HOH A 81 581 21 HOH HOH . F 4 HOH A 82 582 162 HOH HOH . F 4 HOH A 83 583 59 HOH HOH . F 4 HOH A 84 584 41 HOH HOH . F 4 HOH A 85 585 85 HOH HOH . F 4 HOH A 86 586 101 HOH HOH . F 4 HOH A 87 587 42 HOH HOH . F 4 HOH A 88 588 11 HOH HOH . F 4 HOH A 89 589 27 HOH HOH . F 4 HOH A 90 590 112 HOH HOH . F 4 HOH A 91 591 276 HOH HOH . F 4 HOH A 92 592 30 HOH HOH . F 4 HOH A 93 593 226 HOH HOH . F 4 HOH A 94 594 31 HOH HOH . F 4 HOH A 95 595 242 HOH HOH . F 4 HOH A 96 596 155 HOH HOH . F 4 HOH A 97 597 5 HOH HOH . F 4 HOH A 98 598 129 HOH HOH . F 4 HOH A 99 599 133 HOH HOH . F 4 HOH A 100 600 143 HOH HOH . F 4 HOH A 101 601 106 HOH HOH . F 4 HOH A 102 602 135 HOH HOH . F 4 HOH A 103 603 14 HOH HOH . F 4 HOH A 104 604 15 HOH HOH . F 4 HOH A 105 605 65 HOH HOH . F 4 HOH A 106 606 121 HOH HOH . F 4 HOH A 107 607 60 HOH HOH . F 4 HOH A 108 608 239 HOH HOH . F 4 HOH A 109 609 289 HOH HOH . F 4 HOH A 110 610 130 HOH HOH . F 4 HOH A 111 611 287 HOH HOH . F 4 HOH A 112 612 80 HOH HOH . F 4 HOH A 113 613 58 HOH HOH . F 4 HOH A 114 614 32 HOH HOH . F 4 HOH A 115 615 13 HOH HOH . F 4 HOH A 116 616 262 HOH HOH . F 4 HOH A 117 617 219 HOH HOH . F 4 HOH A 118 618 95 HOH HOH . F 4 HOH A 119 619 57 HOH HOH . F 4 HOH A 120 620 63 HOH HOH . F 4 HOH A 121 621 99 HOH HOH . F 4 HOH A 122 622 198 HOH HOH . F 4 HOH A 123 623 74 HOH HOH . F 4 HOH A 124 624 200 HOH HOH . F 4 HOH A 125 625 168 HOH HOH . F 4 HOH A 126 626 169 HOH HOH . F 4 HOH A 127 627 7 HOH HOH . F 4 HOH A 128 628 16 HOH HOH . F 4 HOH A 129 629 294 HOH HOH . F 4 HOH A 130 630 166 HOH HOH . F 4 HOH A 131 631 46 HOH HOH . F 4 HOH A 132 632 18 HOH HOH . F 4 HOH A 133 633 77 HOH HOH . F 4 HOH A 134 634 139 HOH HOH . F 4 HOH A 135 635 2 HOH HOH . F 4 HOH A 136 636 8 HOH HOH . F 4 HOH A 137 637 224 HOH HOH . F 4 HOH A 138 638 53 HOH HOH . F 4 HOH A 139 639 91 HOH HOH . F 4 HOH A 140 640 50 HOH HOH . F 4 HOH A 141 641 249 HOH HOH . F 4 HOH A 142 642 291 HOH HOH . F 4 HOH A 143 643 56 HOH HOH . F 4 HOH A 144 644 93 HOH HOH . F 4 HOH A 145 645 84 HOH HOH . F 4 HOH A 146 646 290 HOH HOH . F 4 HOH A 147 647 113 HOH HOH . F 4 HOH A 148 648 100 HOH HOH . F 4 HOH A 149 649 233 HOH HOH . F 4 HOH A 150 650 223 HOH HOH . F 4 HOH A 151 651 251 HOH HOH . F 4 HOH A 152 652 172 HOH HOH . F 4 HOH A 153 653 160 HOH HOH . F 4 HOH A 154 654 79 HOH HOH . F 4 HOH A 155 655 140 HOH HOH . F 4 HOH A 156 656 23 HOH HOH . F 4 HOH A 157 657 208 HOH HOH . F 4 HOH A 158 658 119 HOH HOH . F 4 HOH A 159 659 236 HOH HOH . F 4 HOH A 160 660 22 HOH HOH . F 4 HOH A 161 661 156 HOH HOH . F 4 HOH A 162 662 117 HOH HOH . F 4 HOH A 163 663 265 HOH HOH . F 4 HOH A 164 664 70 HOH HOH . F 4 HOH A 165 665 107 HOH HOH . F 4 HOH A 166 666 278 HOH HOH . F 4 HOH A 167 667 131 HOH HOH . F 4 HOH A 168 668 190 HOH HOH . F 4 HOH A 169 669 285 HOH HOH . F 4 HOH A 170 670 51 HOH HOH . F 4 HOH A 171 671 136 HOH HOH . F 4 HOH A 172 672 38 HOH HOH . F 4 HOH A 173 673 241 HOH HOH . F 4 HOH A 174 674 279 HOH HOH . F 4 HOH A 175 675 240 HOH HOH . F 4 HOH A 176 676 108 HOH HOH . F 4 HOH A 177 677 286 HOH HOH . F 4 HOH A 178 678 244 HOH HOH . F 4 HOH A 179 679 122 HOH HOH . F 4 HOH A 180 680 49 HOH HOH . F 4 HOH A 181 681 120 HOH HOH . F 4 HOH A 182 682 267 HOH HOH . F 4 HOH A 183 683 213 HOH HOH . F 4 HOH A 184 684 201 HOH HOH . F 4 HOH A 185 685 180 HOH HOH . F 4 HOH A 186 686 188 HOH HOH . F 4 HOH A 187 687 154 HOH HOH . F 4 HOH A 188 688 282 HOH HOH . F 4 HOH A 189 689 281 HOH HOH . F 4 HOH A 190 690 191 HOH HOH . F 4 HOH A 191 691 216 HOH HOH . F 4 HOH A 192 692 274 HOH HOH . F 4 HOH A 193 693 255 HOH HOH . F 4 HOH A 194 694 202 HOH HOH . F 4 HOH A 195 695 215 HOH HOH . F 4 HOH A 196 696 283 HOH HOH . F 4 HOH A 197 697 228 HOH HOH . F 4 HOH A 198 698 234 HOH HOH . F 4 HOH A 199 699 173 HOH HOH . F 4 HOH A 200 700 171 HOH HOH . F 4 HOH A 201 701 203 HOH HOH . F 4 HOH A 202 702 230 HOH HOH . F 4 HOH A 203 703 277 HOH HOH . F 4 HOH A 204 704 116 HOH HOH . F 4 HOH A 205 705 195 HOH HOH . F 4 HOH A 206 706 73 HOH HOH . F 4 HOH A 207 707 151 HOH HOH . F 4 HOH A 208 708 280 HOH HOH . F 4 HOH A 209 709 254 HOH HOH . F 4 HOH A 210 710 105 HOH HOH . F 4 HOH A 211 711 266 HOH HOH . F 4 HOH A 212 712 185 HOH HOH . F 4 HOH A 213 713 164 HOH HOH . F 4 HOH A 214 714 250 HOH HOH . F 4 HOH A 215 715 137 HOH HOH . F 4 HOH A 216 716 252 HOH HOH . F 4 HOH A 217 717 229 HOH HOH . F 4 HOH A 218 718 235 HOH HOH . F 4 HOH A 219 719 284 HOH HOH . F 4 HOH A 220 720 175 HOH HOH . F 4 HOH A 221 721 159 HOH HOH . F 4 HOH A 222 722 48 HOH HOH . F 4 HOH A 223 723 205 HOH HOH . F 4 HOH A 224 724 196 HOH HOH . F 4 HOH A 225 725 90 HOH HOH . F 4 HOH A 226 726 118 HOH HOH . F 4 HOH A 227 727 89 HOH HOH . F 4 HOH A 228 728 145 HOH HOH . F 4 HOH A 229 729 127 HOH HOH . F 4 HOH A 230 730 193 HOH HOH . F 4 HOH A 231 731 146 HOH HOH . F 4 HOH A 232 732 212 HOH HOH . F 4 HOH A 233 733 189 HOH HOH . F 4 HOH A 234 734 199 HOH HOH . F 4 HOH A 235 735 174 HOH HOH . F 4 HOH A 236 736 132 HOH HOH . F 4 HOH A 237 737 40 HOH HOH . F 4 HOH A 238 738 69 HOH HOH . F 4 HOH A 239 739 258 HOH HOH . F 4 HOH A 240 740 97 HOH HOH . F 4 HOH A 241 741 256 HOH HOH . F 4 HOH A 242 742 293 HOH HOH . F 4 HOH A 243 743 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 5.97 -1.067 -6.323 0.8 42.84 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 2 6.65 -0.881 -7.599 0.8 43.25 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 2 7.235 -1.034 -5.092 0.8 42.62 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 2 5.52 -2.764 -6.29 0.8 42.51 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #