data_7GCV # _model_server_result.job_id rVVbhuha2Pkmh1Q00gSVrA _model_server_result.datetime_utc '2024-11-21 09:11:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GCV # _exptl.entry_id 7GCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.07 _cell.angle_gamma 90 _cell.entry_id 7GCV _cell.length_a 112.86 _cell.length_b 52.963 _cell.length_c 45.035 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GCV _atom_sites.fract_transf_matrix[1][1] 0.008861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001895 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 LUC A 1 404 4000 LUC LIG . F 4 HOH A 1 501 72 HOH HOH . F 4 HOH A 2 502 9 HOH HOH . F 4 HOH A 3 503 67 HOH HOH . F 4 HOH A 4 504 10 HOH HOH . F 4 HOH A 5 505 29 HOH HOH . F 4 HOH A 6 506 182 HOH HOH . F 4 HOH A 7 507 34 HOH HOH . F 4 HOH A 8 508 142 HOH HOH . F 4 HOH A 9 509 104 HOH HOH . F 4 HOH A 10 510 239 HOH HOH . F 4 HOH A 11 511 260 HOH HOH . F 4 HOH A 12 512 1 HOH HOH . F 4 HOH A 13 513 141 HOH HOH . F 4 HOH A 14 514 115 HOH HOH . F 4 HOH A 15 515 27 HOH HOH . F 4 HOH A 16 516 81 HOH HOH . F 4 HOH A 17 517 144 HOH HOH . F 4 HOH A 18 518 37 HOH HOH . F 4 HOH A 19 519 78 HOH HOH . F 4 HOH A 20 520 76 HOH HOH . F 4 HOH A 21 521 64 HOH HOH . F 4 HOH A 22 522 62 HOH HOH . F 4 HOH A 23 523 61 HOH HOH . F 4 HOH A 24 524 39 HOH HOH . F 4 HOH A 25 525 12 HOH HOH . F 4 HOH A 26 526 218 HOH HOH . F 4 HOH A 27 527 87 HOH HOH . F 4 HOH A 28 528 30 HOH HOH . F 4 HOH A 29 529 4 HOH HOH . F 4 HOH A 30 530 26 HOH HOH . F 4 HOH A 31 531 42 HOH HOH . F 4 HOH A 32 532 43 HOH HOH . F 4 HOH A 33 533 102 HOH HOH . F 4 HOH A 34 534 86 HOH HOH . F 4 HOH A 35 535 24 HOH HOH . F 4 HOH A 36 536 268 HOH HOH . F 4 HOH A 37 537 31 HOH HOH . F 4 HOH A 38 538 156 HOH HOH . F 4 HOH A 39 539 177 HOH HOH . F 4 HOH A 40 540 289 HOH HOH . F 4 HOH A 41 541 55 HOH HOH . F 4 HOH A 42 542 59 HOH HOH . F 4 HOH A 43 543 21 HOH HOH . F 4 HOH A 44 544 52 HOH HOH . F 4 HOH A 45 545 162 HOH HOH . F 4 HOH A 46 546 85 HOH HOH . F 4 HOH A 47 547 269 HOH HOH . F 4 HOH A 48 548 92 HOH HOH . F 4 HOH A 49 549 82 HOH HOH . F 4 HOH A 50 550 5 HOH HOH . F 4 HOH A 51 551 15 HOH HOH . F 4 HOH A 52 552 11 HOH HOH . F 4 HOH A 53 553 20 HOH HOH . F 4 HOH A 54 554 54 HOH HOH . F 4 HOH A 55 555 3 HOH HOH . F 4 HOH A 56 556 284 HOH HOH . F 4 HOH A 57 557 123 HOH HOH . F 4 HOH A 58 558 66 HOH HOH . F 4 HOH A 59 559 18 HOH HOH . F 4 HOH A 60 560 271 HOH HOH . F 4 HOH A 61 561 6 HOH HOH . F 4 HOH A 62 562 143 HOH HOH . F 4 HOH A 63 563 91 HOH HOH . F 4 HOH A 64 564 14 HOH HOH . F 4 HOH A 65 565 112 HOH HOH . F 4 HOH A 66 566 13 HOH HOH . F 4 HOH A 67 567 7 HOH HOH . F 4 HOH A 68 568 114 HOH HOH . F 4 HOH A 69 569 157 HOH HOH . F 4 HOH A 70 570 2 HOH HOH . F 4 HOH A 71 571 133 HOH HOH . F 4 HOH A 72 572 99 HOH HOH . F 4 HOH A 73 573 28 HOH HOH . F 4 HOH A 74 574 84 HOH HOH . F 4 HOH A 75 575 77 HOH HOH . F 4 HOH A 76 576 160 HOH HOH . F 4 HOH A 77 577 95 HOH HOH . F 4 HOH A 78 578 58 HOH HOH . F 4 HOH A 79 579 283 HOH HOH . F 4 HOH A 80 580 17 HOH HOH . F 4 HOH A 81 581 60 HOH HOH . F 4 HOH A 82 582 74 HOH HOH . F 4 HOH A 83 583 80 HOH HOH . F 4 HOH A 84 584 287 HOH HOH . F 4 HOH A 85 585 57 HOH HOH . F 4 HOH A 86 586 19 HOH HOH . F 4 HOH A 87 587 46 HOH HOH . F 4 HOH A 88 588 100 HOH HOH . F 4 HOH A 89 589 8 HOH HOH . F 4 HOH A 90 590 140 HOH HOH . F 4 HOH A 91 591 41 HOH HOH . F 4 HOH A 92 592 184 HOH HOH . F 4 HOH A 93 593 169 HOH HOH . F 4 HOH A 94 594 240 HOH HOH . F 4 HOH A 95 595 200 HOH HOH . F 4 HOH A 96 596 219 HOH HOH . F 4 HOH A 97 597 264 HOH HOH . F 4 HOH A 98 598 16 HOH HOH . F 4 HOH A 99 599 117 HOH HOH . F 4 HOH A 100 600 166 HOH HOH . F 4 HOH A 101 601 32 HOH HOH . F 4 HOH A 102 602 56 HOH HOH . F 4 HOH A 103 603 51 HOH HOH . F 4 HOH A 104 604 139 HOH HOH . F 4 HOH A 105 605 213 HOH HOH . F 4 HOH A 106 606 122 HOH HOH . F 4 HOH A 107 607 70 HOH HOH . F 4 HOH A 108 608 22 HOH HOH . F 4 HOH A 109 609 113 HOH HOH . F 4 HOH A 110 610 23 HOH HOH . F 4 HOH A 111 611 50 HOH HOH . F 4 HOH A 112 612 281 HOH HOH . F 4 HOH A 113 613 138 HOH HOH . F 4 HOH A 114 614 201 HOH HOH . F 4 HOH A 115 615 203 HOH HOH . F 4 HOH A 116 616 228 HOH HOH . F 4 HOH A 117 617 188 HOH HOH . F 4 HOH A 118 618 172 HOH HOH . F 4 HOH A 119 619 191 HOH HOH . F 4 HOH A 120 620 190 HOH HOH . F 4 HOH A 121 621 282 HOH HOH . F 4 HOH A 122 622 194 HOH HOH . F 4 HOH A 123 623 288 HOH HOH . F 4 HOH A 124 624 164 HOH HOH . F 4 HOH A 125 625 49 HOH HOH . F 4 HOH A 126 626 221 HOH HOH . F 4 HOH A 127 627 233 HOH HOH . F 4 HOH A 128 628 73 HOH HOH . F 4 HOH A 129 629 254 HOH HOH . F 4 HOH A 130 630 137 HOH HOH . F 4 HOH A 131 631 266 HOH HOH . F 4 HOH A 132 632 216 HOH HOH . F 4 HOH A 133 633 250 HOH HOH . F 4 HOH A 134 634 229 HOH HOH . F 4 HOH A 135 635 145 HOH HOH . F 4 HOH A 136 636 48 HOH HOH . F 4 HOH A 137 637 235 HOH HOH . F 4 HOH A 138 638 105 HOH HOH . F 4 HOH A 139 639 89 HOH HOH . F 4 HOH A 140 640 118 HOH HOH . F 4 HOH A 141 641 189 HOH HOH . F 4 HOH A 142 642 285 HOH HOH . F 4 HOH A 143 643 286 HOH HOH . F 4 HOH A 144 644 40 HOH HOH . F 4 HOH A 145 645 97 HOH HOH . F 4 HOH A 146 646 212 HOH HOH . F 4 HOH A 147 647 256 HOH HOH . F 4 HOH A 148 648 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 6.155 -1.13 -6.168 1 65.02 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 2 6.973 -1.124 -7.368 1 65 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 2 7.308 -1.114 -4.854 1 64.87 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 2 5.578 -2.795 -6.028 1 64.61 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #