data_7GDH # _model_server_result.job_id Pq8bY8fwpeAwF3soKQfSsw _model_server_result.datetime_utc '2024-11-09 02:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7GDH # _exptl.entry_id 7GDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.38 _cell.angle_gamma 90 _cell.entry_id 7GDH _cell.length_a 114.079 _cell.length_b 53.455 _cell.length_c 44.531 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C5 _struct_conn.ptnr2_label_comp_id M5X _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id M5X _struct_conn.ptnr2_auth_seq_id 405 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.745 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GDH _atom_sites.fract_transf_matrix[1][1] 0.008766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 M5X A 1 405 1101 M5X LIG . G 4 HOH A 1 501 222 HOH HOH . G 4 HOH A 2 502 269 HOH HOH . G 4 HOH A 3 503 290 HOH HOH . G 4 HOH A 4 504 260 HOH HOH . G 4 HOH A 5 505 98 HOH HOH . G 4 HOH A 6 506 29 HOH HOH . G 4 HOH A 7 507 81 HOH HOH . G 4 HOH A 8 508 206 HOH HOH . G 4 HOH A 9 509 109 HOH HOH . G 4 HOH A 10 510 182 HOH HOH . G 4 HOH A 11 511 111 HOH HOH . G 4 HOH A 12 512 9 HOH HOH . G 4 HOH A 13 513 62 HOH HOH . G 4 HOH A 14 514 115 HOH HOH . G 4 HOH A 15 515 92 HOH HOH . G 4 HOH A 16 516 35 HOH HOH . G 4 HOH A 17 517 154 HOH HOH . G 4 HOH A 18 518 86 HOH HOH . G 4 HOH A 19 519 149 HOH HOH . G 4 HOH A 20 520 55 HOH HOH . G 4 HOH A 21 521 207 HOH HOH . G 4 HOH A 22 522 13 HOH HOH . G 4 HOH A 23 523 103 HOH HOH . G 4 HOH A 24 524 34 HOH HOH . G 4 HOH A 25 525 238 HOH HOH . G 4 HOH A 26 526 186 HOH HOH . G 4 HOH A 27 527 104 HOH HOH . G 4 HOH A 28 528 1 HOH HOH . G 4 HOH A 29 529 27 HOH HOH . G 4 HOH A 30 530 135 HOH HOH . G 4 HOH A 31 531 303 HOH HOH . G 4 HOH A 32 532 68 HOH HOH . G 4 HOH A 33 533 44 HOH HOH . G 4 HOH A 34 534 143 HOH HOH . G 4 HOH A 35 535 52 HOH HOH . G 4 HOH A 36 536 110 HOH HOH . G 4 HOH A 37 537 142 HOH HOH . G 4 HOH A 38 538 41 HOH HOH . G 4 HOH A 39 539 217 HOH HOH . G 4 HOH A 40 540 271 HOH HOH . G 4 HOH A 41 541 93 HOH HOH . G 4 HOH A 42 542 76 HOH HOH . G 4 HOH A 43 543 82 HOH HOH . G 4 HOH A 44 544 4 HOH HOH . G 4 HOH A 45 545 114 HOH HOH . G 4 HOH A 46 546 20 HOH HOH . G 4 HOH A 47 547 101 HOH HOH . G 4 HOH A 48 548 155 HOH HOH . G 4 HOH A 49 549 96 HOH HOH . G 4 HOH A 50 550 121 HOH HOH . G 4 HOH A 51 551 21 HOH HOH . G 4 HOH A 52 552 12 HOH HOH . G 4 HOH A 53 553 42 HOH HOH . G 4 HOH A 54 554 162 HOH HOH . G 4 HOH A 55 555 10 HOH HOH . G 4 HOH A 56 556 15 HOH HOH . G 4 HOH A 57 557 72 HOH HOH . G 4 HOH A 58 558 152 HOH HOH . G 4 HOH A 59 559 67 HOH HOH . G 4 HOH A 60 560 64 HOH HOH . G 4 HOH A 61 561 161 HOH HOH . G 4 HOH A 62 562 24 HOH HOH . G 4 HOH A 63 563 218 HOH HOH . G 4 HOH A 64 564 66 HOH HOH . G 4 HOH A 65 565 19 HOH HOH . G 4 HOH A 66 566 242 HOH HOH . G 4 HOH A 67 567 170 HOH HOH . G 4 HOH A 68 568 43 HOH HOH . G 4 HOH A 69 569 39 HOH HOH . G 4 HOH A 70 570 166 HOH HOH . G 4 HOH A 71 571 144 HOH HOH . G 4 HOH A 72 572 184 HOH HOH . G 4 HOH A 73 573 85 HOH HOH . G 4 HOH A 74 574 90 HOH HOH . G 4 HOH A 75 575 75 HOH HOH . G 4 HOH A 76 576 61 HOH HOH . G 4 HOH A 77 577 3 HOH HOH . G 4 HOH A 78 578 54 HOH HOH . G 4 HOH A 79 579 276 HOH HOH . G 4 HOH A 80 580 210 HOH HOH . G 4 HOH A 81 581 30 HOH HOH . G 4 HOH A 82 582 130 HOH HOH . G 4 HOH A 83 583 197 HOH HOH . G 4 HOH A 84 584 78 HOH HOH . G 4 HOH A 85 585 221 HOH HOH . G 4 HOH A 86 586 129 HOH HOH . G 4 HOH A 87 587 268 HOH HOH . G 4 HOH A 88 588 18 HOH HOH . G 4 HOH A 89 589 71 HOH HOH . G 4 HOH A 90 590 125 HOH HOH . G 4 HOH A 91 591 141 HOH HOH . G 4 HOH A 92 592 28 HOH HOH . G 4 HOH A 93 593 5 HOH HOH . G 4 HOH A 94 594 47 HOH HOH . G 4 HOH A 95 595 26 HOH HOH . G 4 HOH A 96 596 83 HOH HOH . G 4 HOH A 97 597 65 HOH HOH . G 4 HOH A 98 598 95 HOH HOH . G 4 HOH A 99 599 298 HOH HOH . G 4 HOH A 100 600 33 HOH HOH . G 4 HOH A 101 601 261 HOH HOH . G 4 HOH A 102 602 87 HOH HOH . G 4 HOH A 103 603 177 HOH HOH . G 4 HOH A 104 604 31 HOH HOH . G 4 HOH A 105 605 6 HOH HOH . G 4 HOH A 106 606 299 HOH HOH . G 4 HOH A 107 607 304 HOH HOH . G 4 HOH A 108 608 163 HOH HOH . G 4 HOH A 109 609 165 HOH HOH . G 4 HOH A 110 610 58 HOH HOH . G 4 HOH A 111 611 77 HOH HOH . G 4 HOH A 112 612 37 HOH HOH . G 4 HOH A 113 613 84 HOH HOH . G 4 HOH A 114 614 91 HOH HOH . G 4 HOH A 115 615 198 HOH HOH . G 4 HOH A 116 616 133 HOH HOH . G 4 HOH A 117 617 11 HOH HOH . G 4 HOH A 118 618 214 HOH HOH . G 4 HOH A 119 619 112 HOH HOH . G 4 HOH A 120 620 56 HOH HOH . G 4 HOH A 121 621 293 HOH HOH . G 4 HOH A 122 622 117 HOH HOH . G 4 HOH A 123 623 168 HOH HOH . G 4 HOH A 124 624 107 HOH HOH . G 4 HOH A 125 625 2 HOH HOH . G 4 HOH A 126 626 17 HOH HOH . G 4 HOH A 127 627 239 HOH HOH . G 4 HOH A 128 628 126 HOH HOH . G 4 HOH A 129 629 14 HOH HOH . G 4 HOH A 130 630 46 HOH HOH . G 4 HOH A 131 631 219 HOH HOH . G 4 HOH A 132 632 275 HOH HOH . G 4 HOH A 133 633 102 HOH HOH . G 4 HOH A 134 634 100 HOH HOH . G 4 HOH A 135 635 201 HOH HOH . G 4 HOH A 136 636 148 HOH HOH . G 4 HOH A 137 637 208 HOH HOH . G 4 HOH A 138 638 106 HOH HOH . G 4 HOH A 139 639 45 HOH HOH . G 4 HOH A 140 640 63 HOH HOH . G 4 HOH A 141 641 306 HOH HOH . G 4 HOH A 142 642 150 HOH HOH . G 4 HOH A 143 643 80 HOH HOH . G 4 HOH A 144 644 139 HOH HOH . G 4 HOH A 145 645 38 HOH HOH . G 4 HOH A 146 646 57 HOH HOH . G 4 HOH A 147 647 7 HOH HOH . G 4 HOH A 148 648 74 HOH HOH . G 4 HOH A 149 649 79 HOH HOH . G 4 HOH A 150 650 50 HOH HOH . G 4 HOH A 151 651 32 HOH HOH . G 4 HOH A 152 652 99 HOH HOH . G 4 HOH A 153 653 156 HOH HOH . G 4 HOH A 154 654 291 HOH HOH . G 4 HOH A 155 655 88 HOH HOH . G 4 HOH A 156 656 22 HOH HOH . G 4 HOH A 157 657 169 HOH HOH . G 4 HOH A 158 658 288 HOH HOH . G 4 HOH A 159 659 216 HOH HOH . G 4 HOH A 160 660 200 HOH HOH . G 4 HOH A 161 661 283 HOH HOH . G 4 HOH A 162 662 70 HOH HOH . G 4 HOH A 163 663 124 HOH HOH . G 4 HOH A 164 664 264 HOH HOH . G 4 HOH A 165 665 122 HOH HOH . G 4 HOH A 166 666 119 HOH HOH . G 4 HOH A 167 667 265 HOH HOH . G 4 HOH A 168 668 51 HOH HOH . G 4 HOH A 169 669 23 HOH HOH . G 4 HOH A 170 670 240 HOH HOH . G 4 HOH A 171 671 285 HOH HOH . G 4 HOH A 172 672 16 HOH HOH . G 4 HOH A 173 673 228 HOH HOH . G 4 HOH A 174 674 8 HOH HOH . G 4 HOH A 175 675 282 HOH HOH . G 4 HOH A 176 676 234 HOH HOH . G 4 HOH A 177 677 236 HOH HOH . G 4 HOH A 178 678 131 HOH HOH . G 4 HOH A 179 679 172 HOH HOH . G 4 HOH A 180 680 213 HOH HOH . G 4 HOH A 181 681 53 HOH HOH . G 4 HOH A 182 682 188 HOH HOH . G 4 HOH A 183 683 255 HOH HOH . G 4 HOH A 184 684 160 HOH HOH . G 4 HOH A 185 685 205 HOH HOH . G 4 HOH A 186 686 243 HOH HOH . G 4 HOH A 187 687 267 HOH HOH . G 4 HOH A 188 688 190 HOH HOH . G 4 HOH A 189 689 224 HOH HOH . G 4 HOH A 190 690 237 HOH HOH . G 4 HOH A 191 691 251 HOH HOH . G 4 HOH A 192 692 113 HOH HOH . G 4 HOH A 193 693 296 HOH HOH . G 4 HOH A 194 694 274 HOH HOH . G 4 HOH A 195 695 49 HOH HOH . G 4 HOH A 196 696 244 HOH HOH . G 4 HOH A 197 697 136 HOH HOH . G 4 HOH A 198 698 278 HOH HOH . G 4 HOH A 199 699 250 HOH HOH . G 4 HOH A 200 700 178 HOH HOH . G 4 HOH A 201 701 289 HOH HOH . G 4 HOH A 202 702 305 HOH HOH . G 4 HOH A 203 703 307 HOH HOH . G 4 HOH A 204 704 280 HOH HOH . G 4 HOH A 205 705 281 HOH HOH . G 4 HOH A 206 706 171 HOH HOH . G 4 HOH A 207 707 302 HOH HOH . G 4 HOH A 208 708 233 HOH HOH . G 4 HOH A 209 709 203 HOH HOH . G 4 HOH A 210 710 59 HOH HOH . G 4 HOH A 211 711 254 HOH HOH . G 4 HOH A 212 712 300 HOH HOH . G 4 HOH A 213 713 151 HOH HOH . G 4 HOH A 214 714 230 HOH HOH . G 4 HOH A 215 715 137 HOH HOH . G 4 HOH A 216 716 138 HOH HOH . G 4 HOH A 217 717 191 HOH HOH . G 4 HOH A 218 718 194 HOH HOH . G 4 HOH A 219 719 116 HOH HOH . G 4 HOH A 220 720 294 HOH HOH . G 4 HOH A 221 721 159 HOH HOH . G 4 HOH A 222 722 73 HOH HOH . G 4 HOH A 223 723 253 HOH HOH . G 4 HOH A 224 724 232 HOH HOH . G 4 HOH A 225 725 229 HOH HOH . G 4 HOH A 226 726 196 HOH HOH . G 4 HOH A 227 727 301 HOH HOH . G 4 HOH A 228 728 220 HOH HOH . G 4 HOH A 229 729 48 HOH HOH . G 4 HOH A 230 730 266 HOH HOH . G 4 HOH A 231 731 89 HOH HOH . G 4 HOH A 232 732 235 HOH HOH . G 4 HOH A 233 733 193 HOH HOH . G 4 HOH A 234 734 187 HOH HOH . G 4 HOH A 235 735 259 HOH HOH . G 4 HOH A 236 736 118 HOH HOH . G 4 HOH A 237 737 145 HOH HOH . G 4 HOH A 238 738 295 HOH HOH . G 4 HOH A 239 739 231 HOH HOH . G 4 HOH A 240 740 146 HOH HOH . G 4 HOH A 241 741 297 HOH HOH . G 4 HOH A 242 742 199 HOH HOH . G 4 HOH A 243 743 212 HOH HOH . G 4 HOH A 244 744 189 HOH HOH . G 4 HOH A 245 745 132 HOH HOH . G 4 HOH A 246 746 40 HOH HOH . G 4 HOH A 247 747 292 HOH HOH . G 4 HOH A 248 748 195 HOH HOH . G 4 HOH A 249 749 227 HOH HOH . G 4 HOH A 250 750 120 HOH HOH . G 4 HOH A 251 751 97 HOH HOH . G 4 HOH A 252 752 69 HOH HOH . G 4 HOH A 253 753 256 HOH HOH . G 4 HOH A 254 754 284 HOH HOH . G 4 HOH A 255 755 174 HOH HOH . G 4 HOH A 256 756 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 2.498 -19.063 8.276 1 78.22 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 2 3.788 -18.748 8.913 1 78.1 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 2 1.336 -18.001 9.092 1 78.19 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 2 2.027 -20.614 8.997 1 78.19 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #