data_7GDH
#
_model_server_result.job_id            RGr8bKN2UAMP5sa5CeN-Gw 
_model_server_result.datetime_utc      '2024-11-21 08:57:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7GDH 
#
_exptl.entry_id    7GDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.38 
_cell.angle_gamma         90 
_cell.entry_id            7GDH 
_cell.length_a            114.079 
_cell.length_b            53.455 
_cell.length_c            44.531 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             145 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              145 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            C5 
_struct_conn.ptnr2_label_comp_id            M5X 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             M5X 
_struct_conn.ptnr2_auth_seq_id              405 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.745 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7GDH 
_atom_sites.fract_transf_matrix[1][1]    0.008766 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001764 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018707 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022907 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 1002 DMS DMS . 
C 2 DMS A 1 402 1003 DMS DMS . 
D 2 DMS A 1 403 1004 DMS DMS . 
E 2 DMS A 1 404 1006 DMS DMS . 
F 3 M5X A 1 405 1101 M5X LIG . 
G 4 HOH A 1 501 222 HOH HOH . 
G 4 HOH A 2 502 269 HOH HOH . 
G 4 HOH A 3 503 290 HOH HOH . 
G 4 HOH A 4 504 260 HOH HOH . 
G 4 HOH A 5 505 98 HOH HOH . 
G 4 HOH A 6 506 29 HOH HOH . 
G 4 HOH A 7 507 81 HOH HOH . 
G 4 HOH A 8 508 206 HOH HOH . 
G 4 HOH A 9 509 109 HOH HOH . 
G 4 HOH A 10 510 182 HOH HOH . 
G 4 HOH A 11 511 111 HOH HOH . 
G 4 HOH A 12 512 9 HOH HOH . 
G 4 HOH A 13 513 62 HOH HOH . 
G 4 HOH A 14 514 115 HOH HOH . 
G 4 HOH A 15 515 92 HOH HOH . 
G 4 HOH A 16 516 35 HOH HOH . 
G 4 HOH A 17 517 154 HOH HOH . 
G 4 HOH A 18 518 86 HOH HOH . 
G 4 HOH A 19 519 149 HOH HOH . 
G 4 HOH A 20 520 55 HOH HOH . 
G 4 HOH A 21 521 207 HOH HOH . 
G 4 HOH A 22 522 13 HOH HOH . 
G 4 HOH A 23 523 103 HOH HOH . 
G 4 HOH A 24 524 34 HOH HOH . 
G 4 HOH A 25 525 238 HOH HOH . 
G 4 HOH A 26 526 186 HOH HOH . 
G 4 HOH A 27 527 104 HOH HOH . 
G 4 HOH A 28 528 1 HOH HOH . 
G 4 HOH A 29 529 27 HOH HOH . 
G 4 HOH A 30 530 135 HOH HOH . 
G 4 HOH A 31 531 303 HOH HOH . 
G 4 HOH A 32 532 68 HOH HOH . 
G 4 HOH A 33 533 44 HOH HOH . 
G 4 HOH A 34 534 143 HOH HOH . 
G 4 HOH A 35 535 52 HOH HOH . 
G 4 HOH A 36 536 110 HOH HOH . 
G 4 HOH A 37 537 142 HOH HOH . 
G 4 HOH A 38 538 41 HOH HOH . 
G 4 HOH A 39 539 217 HOH HOH . 
G 4 HOH A 40 540 271 HOH HOH . 
G 4 HOH A 41 541 93 HOH HOH . 
G 4 HOH A 42 542 76 HOH HOH . 
G 4 HOH A 43 543 82 HOH HOH . 
G 4 HOH A 44 544 4 HOH HOH . 
G 4 HOH A 45 545 114 HOH HOH . 
G 4 HOH A 46 546 20 HOH HOH . 
G 4 HOH A 47 547 101 HOH HOH . 
G 4 HOH A 48 548 155 HOH HOH . 
G 4 HOH A 49 549 96 HOH HOH . 
G 4 HOH A 50 550 121 HOH HOH . 
G 4 HOH A 51 551 21 HOH HOH . 
G 4 HOH A 52 552 12 HOH HOH . 
G 4 HOH A 53 553 42 HOH HOH . 
G 4 HOH A 54 554 162 HOH HOH . 
G 4 HOH A 55 555 10 HOH HOH . 
G 4 HOH A 56 556 15 HOH HOH . 
G 4 HOH A 57 557 72 HOH HOH . 
G 4 HOH A 58 558 152 HOH HOH . 
G 4 HOH A 59 559 67 HOH HOH . 
G 4 HOH A 60 560 64 HOH HOH . 
G 4 HOH A 61 561 161 HOH HOH . 
G 4 HOH A 62 562 24 HOH HOH . 
G 4 HOH A 63 563 218 HOH HOH . 
G 4 HOH A 64 564 66 HOH HOH . 
G 4 HOH A 65 565 19 HOH HOH . 
G 4 HOH A 66 566 242 HOH HOH . 
G 4 HOH A 67 567 170 HOH HOH . 
G 4 HOH A 68 568 43 HOH HOH . 
G 4 HOH A 69 569 39 HOH HOH . 
G 4 HOH A 70 570 166 HOH HOH . 
G 4 HOH A 71 571 144 HOH HOH . 
G 4 HOH A 72 572 184 HOH HOH . 
G 4 HOH A 73 573 85 HOH HOH . 
G 4 HOH A 74 574 90 HOH HOH . 
G 4 HOH A 75 575 75 HOH HOH . 
G 4 HOH A 76 576 61 HOH HOH . 
G 4 HOH A 77 577 3 HOH HOH . 
G 4 HOH A 78 578 54 HOH HOH . 
G 4 HOH A 79 579 276 HOH HOH . 
G 4 HOH A 80 580 210 HOH HOH . 
G 4 HOH A 81 581 30 HOH HOH . 
G 4 HOH A 82 582 130 HOH HOH . 
G 4 HOH A 83 583 197 HOH HOH . 
G 4 HOH A 84 584 78 HOH HOH . 
G 4 HOH A 85 585 221 HOH HOH . 
G 4 HOH A 86 586 129 HOH HOH . 
G 4 HOH A 87 587 268 HOH HOH . 
G 4 HOH A 88 588 18 HOH HOH . 
G 4 HOH A 89 589 71 HOH HOH . 
G 4 HOH A 90 590 125 HOH HOH . 
G 4 HOH A 91 591 141 HOH HOH . 
G 4 HOH A 92 592 28 HOH HOH . 
G 4 HOH A 93 593 5 HOH HOH . 
G 4 HOH A 94 594 47 HOH HOH . 
G 4 HOH A 95 595 26 HOH HOH . 
G 4 HOH A 96 596 83 HOH HOH . 
G 4 HOH A 97 597 65 HOH HOH . 
G 4 HOH A 98 598 95 HOH HOH . 
G 4 HOH A 99 599 298 HOH HOH . 
G 4 HOH A 100 600 33 HOH HOH . 
G 4 HOH A 101 601 261 HOH HOH . 
G 4 HOH A 102 602 87 HOH HOH . 
G 4 HOH A 103 603 177 HOH HOH . 
G 4 HOH A 104 604 31 HOH HOH . 
G 4 HOH A 105 605 6 HOH HOH . 
G 4 HOH A 106 606 299 HOH HOH . 
G 4 HOH A 107 607 304 HOH HOH . 
G 4 HOH A 108 608 163 HOH HOH . 
G 4 HOH A 109 609 165 HOH HOH . 
G 4 HOH A 110 610 58 HOH HOH . 
G 4 HOH A 111 611 77 HOH HOH . 
G 4 HOH A 112 612 37 HOH HOH . 
G 4 HOH A 113 613 84 HOH HOH . 
G 4 HOH A 114 614 91 HOH HOH . 
G 4 HOH A 115 615 198 HOH HOH . 
G 4 HOH A 116 616 133 HOH HOH . 
G 4 HOH A 117 617 11 HOH HOH . 
G 4 HOH A 118 618 214 HOH HOH . 
G 4 HOH A 119 619 112 HOH HOH . 
G 4 HOH A 120 620 56 HOH HOH . 
G 4 HOH A 121 621 293 HOH HOH . 
G 4 HOH A 122 622 117 HOH HOH . 
G 4 HOH A 123 623 168 HOH HOH . 
G 4 HOH A 124 624 107 HOH HOH . 
G 4 HOH A 125 625 2 HOH HOH . 
G 4 HOH A 126 626 17 HOH HOH . 
G 4 HOH A 127 627 239 HOH HOH . 
G 4 HOH A 128 628 126 HOH HOH . 
G 4 HOH A 129 629 14 HOH HOH . 
G 4 HOH A 130 630 46 HOH HOH . 
G 4 HOH A 131 631 219 HOH HOH . 
G 4 HOH A 132 632 275 HOH HOH . 
G 4 HOH A 133 633 102 HOH HOH . 
G 4 HOH A 134 634 100 HOH HOH . 
G 4 HOH A 135 635 201 HOH HOH . 
G 4 HOH A 136 636 148 HOH HOH . 
G 4 HOH A 137 637 208 HOH HOH . 
G 4 HOH A 138 638 106 HOH HOH . 
G 4 HOH A 139 639 45 HOH HOH . 
G 4 HOH A 140 640 63 HOH HOH . 
G 4 HOH A 141 641 306 HOH HOH . 
G 4 HOH A 142 642 150 HOH HOH . 
G 4 HOH A 143 643 80 HOH HOH . 
G 4 HOH A 144 644 139 HOH HOH . 
G 4 HOH A 145 645 38 HOH HOH . 
G 4 HOH A 146 646 57 HOH HOH . 
G 4 HOH A 147 647 7 HOH HOH . 
G 4 HOH A 148 648 74 HOH HOH . 
G 4 HOH A 149 649 79 HOH HOH . 
G 4 HOH A 150 650 50 HOH HOH . 
G 4 HOH A 151 651 32 HOH HOH . 
G 4 HOH A 152 652 99 HOH HOH . 
G 4 HOH A 153 653 156 HOH HOH . 
G 4 HOH A 154 654 291 HOH HOH . 
G 4 HOH A 155 655 88 HOH HOH . 
G 4 HOH A 156 656 22 HOH HOH . 
G 4 HOH A 157 657 169 HOH HOH . 
G 4 HOH A 158 658 288 HOH HOH . 
G 4 HOH A 159 659 216 HOH HOH . 
G 4 HOH A 160 660 200 HOH HOH . 
G 4 HOH A 161 661 283 HOH HOH . 
G 4 HOH A 162 662 70 HOH HOH . 
G 4 HOH A 163 663 124 HOH HOH . 
G 4 HOH A 164 664 264 HOH HOH . 
G 4 HOH A 165 665 122 HOH HOH . 
G 4 HOH A 166 666 119 HOH HOH . 
G 4 HOH A 167 667 265 HOH HOH . 
G 4 HOH A 168 668 51 HOH HOH . 
G 4 HOH A 169 669 23 HOH HOH . 
G 4 HOH A 170 670 240 HOH HOH . 
G 4 HOH A 171 671 285 HOH HOH . 
G 4 HOH A 172 672 16 HOH HOH . 
G 4 HOH A 173 673 228 HOH HOH . 
G 4 HOH A 174 674 8 HOH HOH . 
G 4 HOH A 175 675 282 HOH HOH . 
G 4 HOH A 176 676 234 HOH HOH . 
G 4 HOH A 177 677 236 HOH HOH . 
G 4 HOH A 178 678 131 HOH HOH . 
G 4 HOH A 179 679 172 HOH HOH . 
G 4 HOH A 180 680 213 HOH HOH . 
G 4 HOH A 181 681 53 HOH HOH . 
G 4 HOH A 182 682 188 HOH HOH . 
G 4 HOH A 183 683 255 HOH HOH . 
G 4 HOH A 184 684 160 HOH HOH . 
G 4 HOH A 185 685 205 HOH HOH . 
G 4 HOH A 186 686 243 HOH HOH . 
G 4 HOH A 187 687 267 HOH HOH . 
G 4 HOH A 188 688 190 HOH HOH . 
G 4 HOH A 189 689 224 HOH HOH . 
G 4 HOH A 190 690 237 HOH HOH . 
G 4 HOH A 191 691 251 HOH HOH . 
G 4 HOH A 192 692 113 HOH HOH . 
G 4 HOH A 193 693 296 HOH HOH . 
G 4 HOH A 194 694 274 HOH HOH . 
G 4 HOH A 195 695 49 HOH HOH . 
G 4 HOH A 196 696 244 HOH HOH . 
G 4 HOH A 197 697 136 HOH HOH . 
G 4 HOH A 198 698 278 HOH HOH . 
G 4 HOH A 199 699 250 HOH HOH . 
G 4 HOH A 200 700 178 HOH HOH . 
G 4 HOH A 201 701 289 HOH HOH . 
G 4 HOH A 202 702 305 HOH HOH . 
G 4 HOH A 203 703 307 HOH HOH . 
G 4 HOH A 204 704 280 HOH HOH . 
G 4 HOH A 205 705 281 HOH HOH . 
G 4 HOH A 206 706 171 HOH HOH . 
G 4 HOH A 207 707 302 HOH HOH . 
G 4 HOH A 208 708 233 HOH HOH . 
G 4 HOH A 209 709 203 HOH HOH . 
G 4 HOH A 210 710 59 HOH HOH . 
G 4 HOH A 211 711 254 HOH HOH . 
G 4 HOH A 212 712 300 HOH HOH . 
G 4 HOH A 213 713 151 HOH HOH . 
G 4 HOH A 214 714 230 HOH HOH . 
G 4 HOH A 215 715 137 HOH HOH . 
G 4 HOH A 216 716 138 HOH HOH . 
G 4 HOH A 217 717 191 HOH HOH . 
G 4 HOH A 218 718 194 HOH HOH . 
G 4 HOH A 219 719 116 HOH HOH . 
G 4 HOH A 220 720 294 HOH HOH . 
G 4 HOH A 221 721 159 HOH HOH . 
G 4 HOH A 222 722 73 HOH HOH . 
G 4 HOH A 223 723 253 HOH HOH . 
G 4 HOH A 224 724 232 HOH HOH . 
G 4 HOH A 225 725 229 HOH HOH . 
G 4 HOH A 226 726 196 HOH HOH . 
G 4 HOH A 227 727 301 HOH HOH . 
G 4 HOH A 228 728 220 HOH HOH . 
G 4 HOH A 229 729 48 HOH HOH . 
G 4 HOH A 230 730 266 HOH HOH . 
G 4 HOH A 231 731 89 HOH HOH . 
G 4 HOH A 232 732 235 HOH HOH . 
G 4 HOH A 233 733 193 HOH HOH . 
G 4 HOH A 234 734 187 HOH HOH . 
G 4 HOH A 235 735 259 HOH HOH . 
G 4 HOH A 236 736 118 HOH HOH . 
G 4 HOH A 237 737 145 HOH HOH . 
G 4 HOH A 238 738 295 HOH HOH . 
G 4 HOH A 239 739 231 HOH HOH . 
G 4 HOH A 240 740 146 HOH HOH . 
G 4 HOH A 241 741 297 HOH HOH . 
G 4 HOH A 242 742 199 HOH HOH . 
G 4 HOH A 243 743 212 HOH HOH . 
G 4 HOH A 244 744 189 HOH HOH . 
G 4 HOH A 245 745 132 HOH HOH . 
G 4 HOH A 246 746 40 HOH HOH . 
G 4 HOH A 247 747 292 HOH HOH . 
G 4 HOH A 248 748 195 HOH HOH . 
G 4 HOH A 249 749 227 HOH HOH . 
G 4 HOH A 250 750 120 HOH HOH . 
G 4 HOH A 251 751 97 HOH HOH . 
G 4 HOH A 252 752 69 HOH HOH . 
G 4 HOH A 253 753 256 HOH HOH . 
G 4 HOH A 254 754 284 HOH HOH . 
G 4 HOH A 255 755 174 HOH HOH . 
G 4 HOH A 256 756 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 2 2.498 -19.063 8.276 1 78.22 ? S DMS 403 A 1 
HETATM 2 O O DMS . . . D 2 3.788 -18.748 8.913 1 78.1 ? O DMS 403 A 1 
HETATM 3 C C1 DMS . . . D 2 1.336 -18.001 9.092 1 78.19 ? C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . D 2 2.027 -20.614 8.997 1 78.19 ? C2 DMS 403 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#