data_7GDP
#
_model_server_result.job_id            qv7V9yK-HYYn93w-hdBaIA 
_model_server_result.datetime_utc      '2024-11-09 23:21:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7gdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7GDP 
#
_exptl.entry_id    7GDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.63 
_cell.angle_gamma         90 
_cell.entry_id            7GDP 
_cell.length_a            113.191 
_cell.length_b            53.247 
_cell.length_c            44.49 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7GDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7GDP 
_atom_sites.fract_transf_matrix[1][1]    0.008835 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001818 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 1002 DMS DMS . 
C 2 DMS A 1 402 1003 DMS DMS . 
D 2 DMS A 1 403 1004 DMS DMS . 
E 2 DMS A 1 404 1006 DMS DMS . 
F 3 MVX A 1 405 1101 MVX LIG . 
G 4 HOH A 1 501 72 HOH HOH . 
G 4 HOH A 2 502 182 HOH HOH . 
G 4 HOH A 3 503 269 HOH HOH . 
G 4 HOH A 4 504 39 HOH HOH . 
G 4 HOH A 5 505 35 HOH HOH . 
G 4 HOH A 6 506 86 HOH HOH . 
G 4 HOH A 7 507 149 HOH HOH . 
G 4 HOH A 8 508 293 HOH HOH . 
G 4 HOH A 9 509 104 HOH HOH . 
G 4 HOH A 10 510 9 HOH HOH . 
G 4 HOH A 11 511 144 HOH HOH . 
G 4 HOH A 12 512 142 HOH HOH . 
G 4 HOH A 13 513 75 HOH HOH . 
G 4 HOH A 14 514 29 HOH HOH . 
G 4 HOH A 15 515 92 HOH HOH . 
G 4 HOH A 16 516 43 HOH HOH . 
G 4 HOH A 17 517 110 HOH HOH . 
G 4 HOH A 18 518 10 HOH HOH . 
G 4 HOH A 19 519 4 HOH HOH . 
G 4 HOH A 20 520 54 HOH HOH . 
G 4 HOH A 21 521 67 HOH HOH . 
G 4 HOH A 22 522 102 HOH HOH . 
G 4 HOH A 23 523 243 HOH HOH . 
G 4 HOH A 24 524 34 HOH HOH . 
G 4 HOH A 25 525 31 HOH HOH . 
G 4 HOH A 26 526 165 HOH HOH . 
G 4 HOH A 27 527 123 HOH HOH . 
G 4 HOH A 28 528 217 HOH HOH . 
G 4 HOH A 29 529 1 HOH HOH . 
G 4 HOH A 30 530 62 HOH HOH . 
G 4 HOH A 31 531 101 HOH HOH . 
G 4 HOH A 32 532 126 HOH HOH . 
G 4 HOH A 33 533 24 HOH HOH . 
G 4 HOH A 34 534 61 HOH HOH . 
G 4 HOH A 35 535 141 HOH HOH . 
G 4 HOH A 36 536 76 HOH HOH . 
G 4 HOH A 37 537 96 HOH HOH . 
G 4 HOH A 38 538 268 HOH HOH . 
G 4 HOH A 39 539 143 HOH HOH . 
G 4 HOH A 40 540 161 HOH HOH . 
G 4 HOH A 41 541 264 HOH HOH . 
G 4 HOH A 42 542 52 HOH HOH . 
G 4 HOH A 43 543 85 HOH HOH . 
G 4 HOH A 44 544 47 HOH HOH . 
G 4 HOH A 45 545 66 HOH HOH . 
G 4 HOH A 46 546 93 HOH HOH . 
G 4 HOH A 47 547 81 HOH HOH . 
G 4 HOH A 48 548 11 HOH HOH . 
G 4 HOH A 49 549 207 HOH HOH . 
G 4 HOH A 50 550 88 HOH HOH . 
G 4 HOH A 51 551 114 HOH HOH . 
G 4 HOH A 52 552 20 HOH HOH . 
G 4 HOH A 53 553 71 HOH HOH . 
G 4 HOH A 54 554 37 HOH HOH . 
G 4 HOH A 55 555 218 HOH HOH . 
G 4 HOH A 56 556 64 HOH HOH . 
G 4 HOH A 57 557 133 HOH HOH . 
G 4 HOH A 58 558 271 HOH HOH . 
G 4 HOH A 59 559 177 HOH HOH . 
G 4 HOH A 60 560 184 HOH HOH . 
G 4 HOH A 61 561 6 HOH HOH . 
G 4 HOH A 62 562 211 HOH HOH . 
G 4 HOH A 63 563 25 HOH HOH . 
G 4 HOH A 64 564 282 HOH HOH . 
G 4 HOH A 65 565 115 HOH HOH . 
G 4 HOH A 66 566 42 HOH HOH . 
G 4 HOH A 67 567 98 HOH HOH . 
G 4 HOH A 68 568 26 HOH HOH . 
G 4 HOH A 69 569 12 HOH HOH . 
G 4 HOH A 70 570 135 HOH HOH . 
G 4 HOH A 71 571 79 HOH HOH . 
G 4 HOH A 72 572 3 HOH HOH . 
G 4 HOH A 73 573 68 HOH HOH . 
G 4 HOH A 74 574 291 HOH HOH . 
G 4 HOH A 75 575 21 HOH HOH . 
G 4 HOH A 76 576 15 HOH HOH . 
G 4 HOH A 77 577 17 HOH HOH . 
G 4 HOH A 78 578 5 HOH HOH . 
G 4 HOH A 79 579 87 HOH HOH . 
G 4 HOH A 80 580 214 HOH HOH . 
G 4 HOH A 81 581 275 HOH HOH . 
G 4 HOH A 82 582 30 HOH HOH . 
G 4 HOH A 83 583 27 HOH HOH . 
G 4 HOH A 84 584 125 HOH HOH . 
G 4 HOH A 85 585 28 HOH HOH . 
G 4 HOH A 86 586 83 HOH HOH . 
G 4 HOH A 87 587 78 HOH HOH . 
G 4 HOH A 88 588 234 HOH HOH . 
G 4 HOH A 89 589 155 HOH HOH . 
G 4 HOH A 90 590 260 HOH HOH . 
G 4 HOH A 91 591 111 HOH HOH . 
G 4 HOH A 92 592 19 HOH HOH . 
G 4 HOH A 93 593 84 HOH HOH . 
G 4 HOH A 94 594 112 HOH HOH . 
G 4 HOH A 95 595 153 HOH HOH . 
G 4 HOH A 96 596 74 HOH HOH . 
G 4 HOH A 97 597 168 HOH HOH . 
G 4 HOH A 98 598 2 HOH HOH . 
G 4 HOH A 99 599 63 HOH HOH . 
G 4 HOH A 100 600 13 HOH HOH . 
G 4 HOH A 101 601 242 HOH HOH . 
G 4 HOH A 102 602 166 HOH HOH . 
G 4 HOH A 103 603 287 HOH HOH . 
G 4 HOH A 104 604 58 HOH HOH . 
G 4 HOH A 105 605 286 HOH HOH . 
G 4 HOH A 106 606 298 HOH HOH . 
G 4 HOH A 107 607 100 HOH HOH . 
G 4 HOH A 108 608 169 HOH HOH . 
G 4 HOH A 109 609 150 HOH HOH . 
G 4 HOH A 110 610 99 HOH HOH . 
G 4 HOH A 111 611 7 HOH HOH . 
G 4 HOH A 112 612 265 HOH HOH . 
G 4 HOH A 113 613 219 HOH HOH . 
G 4 HOH A 114 614 94 HOH HOH . 
G 4 HOH A 115 615 261 HOH HOH . 
G 4 HOH A 116 616 80 HOH HOH . 
G 4 HOH A 117 617 152 HOH HOH . 
G 4 HOH A 118 618 60 HOH HOH . 
G 4 HOH A 119 619 14 HOH HOH . 
G 4 HOH A 120 620 56 HOH HOH . 
G 4 HOH A 121 621 38 HOH HOH . 
G 4 HOH A 122 622 139 HOH HOH . 
G 4 HOH A 123 623 77 HOH HOH . 
G 4 HOH A 124 624 51 HOH HOH . 
G 4 HOH A 125 625 122 HOH HOH . 
G 4 HOH A 126 626 198 HOH HOH . 
G 4 HOH A 127 627 50 HOH HOH . 
G 4 HOH A 128 628 46 HOH HOH . 
G 4 HOH A 129 629 180 HOH HOH . 
G 4 HOH A 130 630 163 HOH HOH . 
G 4 HOH A 131 631 95 HOH HOH . 
G 4 HOH A 132 632 107 HOH HOH . 
G 4 HOH A 133 633 190 HOH HOH . 
G 4 HOH A 134 634 32 HOH HOH . 
G 4 HOH A 135 635 18 HOH HOH . 
G 4 HOH A 136 636 301 HOH HOH . 
G 4 HOH A 137 637 136 HOH HOH . 
G 4 HOH A 138 638 108 HOH HOH . 
G 4 HOH A 139 639 57 HOH HOH . 
G 4 HOH A 140 640 8 HOH HOH . 
G 4 HOH A 141 641 41 HOH HOH . 
G 4 HOH A 142 642 59 HOH HOH . 
G 4 HOH A 143 643 16 HOH HOH . 
G 4 HOH A 144 644 124 HOH HOH . 
G 4 HOH A 145 645 208 HOH HOH . 
G 4 HOH A 146 646 23 HOH HOH . 
G 4 HOH A 147 647 200 HOH HOH . 
G 4 HOH A 148 648 239 HOH HOH . 
G 4 HOH A 149 649 236 HOH HOH . 
G 4 HOH A 150 650 53 HOH HOH . 
G 4 HOH A 151 651 117 HOH HOH . 
G 4 HOH A 152 652 186 HOH HOH . 
G 4 HOH A 153 653 283 HOH HOH . 
G 4 HOH A 154 654 129 HOH HOH . 
G 4 HOH A 155 655 237 HOH HOH . 
G 4 HOH A 156 656 202 HOH HOH . 
G 4 HOH A 157 657 262 HOH HOH . 
G 4 HOH A 158 658 296 HOH HOH . 
G 4 HOH A 159 659 255 HOH HOH . 
G 4 HOH A 160 660 113 HOH HOH . 
G 4 HOH A 161 661 22 HOH HOH . 
G 4 HOH A 162 662 171 HOH HOH . 
G 4 HOH A 163 663 244 HOH HOH . 
G 4 HOH A 164 664 91 HOH HOH . 
G 4 HOH A 165 665 33 HOH HOH . 
G 4 HOH A 166 666 257 HOH HOH . 
G 4 HOH A 167 667 221 HOH HOH . 
G 4 HOH A 168 668 120 HOH HOH . 
G 4 HOH A 169 669 272 HOH HOH . 
G 4 HOH A 170 670 70 HOH HOH . 
G 4 HOH A 171 671 252 HOH HOH . 
G 4 HOH A 172 672 201 HOH HOH . 
G 4 HOH A 173 673 188 HOH HOH . 
G 4 HOH A 174 674 302 HOH HOH . 
G 4 HOH A 175 675 278 HOH HOH . 
G 4 HOH A 176 676 157 HOH HOH . 
G 4 HOH A 177 677 49 HOH HOH . 
G 4 HOH A 178 678 220 HOH HOH . 
G 4 HOH A 179 679 172 HOH HOH . 
G 4 HOH A 180 680 195 HOH HOH . 
G 4 HOH A 181 681 230 HOH HOH . 
G 4 HOH A 182 682 90 HOH HOH . 
G 4 HOH A 183 683 228 HOH HOH . 
G 4 HOH A 184 684 222 HOH HOH . 
G 4 HOH A 185 685 203 HOH HOH . 
G 4 HOH A 186 686 191 HOH HOH . 
G 4 HOH A 187 687 216 HOH HOH . 
G 4 HOH A 188 688 300 HOH HOH . 
G 4 HOH A 189 689 294 HOH HOH . 
G 4 HOH A 190 690 183 HOH HOH . 
G 4 HOH A 191 691 116 HOH HOH . 
G 4 HOH A 192 692 254 HOH HOH . 
G 4 HOH A 193 693 175 HOH HOH . 
G 4 HOH A 194 694 109 HOH HOH . 
G 4 HOH A 195 695 151 HOH HOH . 
G 4 HOH A 196 696 241 HOH HOH . 
G 4 HOH A 197 697 137 HOH HOH . 
G 4 HOH A 198 698 280 HOH HOH . 
G 4 HOH A 199 699 266 HOH HOH . 
G 4 HOH A 200 700 263 HOH HOH . 
G 4 HOH A 201 701 297 HOH HOH . 
G 4 HOH A 202 702 277 HOH HOH . 
G 4 HOH A 203 703 235 HOH HOH . 
G 4 HOH A 204 704 89 HOH HOH . 
G 4 HOH A 205 705 288 HOH HOH . 
G 4 HOH A 206 706 105 HOH HOH . 
G 4 HOH A 207 707 121 HOH HOH . 
G 4 HOH A 208 708 226 HOH HOH . 
G 4 HOH A 209 709 145 HOH HOH . 
G 4 HOH A 210 710 295 HOH HOH . 
G 4 HOH A 211 711 154 HOH HOH . 
G 4 HOH A 212 712 40 HOH HOH . 
G 4 HOH A 213 713 290 HOH HOH . 
G 4 HOH A 214 714 146 HOH HOH . 
G 4 HOH A 215 715 118 HOH HOH . 
G 4 HOH A 216 716 193 HOH HOH . 
G 4 HOH A 217 717 48 HOH HOH . 
G 4 HOH A 218 718 127 HOH HOH . 
G 4 HOH A 219 719 69 HOH HOH . 
G 4 HOH A 220 720 189 HOH HOH . 
G 4 HOH A 221 721 231 HOH HOH . 
G 4 HOH A 222 722 97 HOH HOH . 
G 4 HOH A 223 723 199 HOH HOH . 
G 4 HOH A 224 724 256 HOH HOH . 
G 4 HOH A 225 725 258 HOH HOH . 
G 4 HOH A 226 726 289 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 2 2.602 -19.137 8.392 1 70.54 ? S DMS 403 A 1 
HETATM 2 O O DMS . . . D 2 3.841 -18.757 9.091 1 70.42 ? O DMS 403 A 1 
HETATM 3 C C1 DMS . . . D 2 1.356 -18.064 9.042 1 70.48 ? C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . D 2 2.1 -20.645 9.189 1 70.69 ? C2 DMS 403 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#