data_7GDP # _model_server_result.job_id GC4-Vv2qu4KuxB-d2wzdfw _model_server_result.datetime_utc '2024-11-09 23:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GDP # _exptl.entry_id 7GDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.732 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-5-chloro-N-(4-cyclopropyl-4H-1,2,4-triazol-3-yl)-2,3-dihydro-1-benzofuran-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.63 _cell.angle_gamma 90 _cell.entry_id 7GDP _cell.length_a 113.191 _cell.length_b 53.247 _cell.length_c 44.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H13 Cl N4 O2' _chem_comp.formula_weight 304.732 _chem_comp.id MVX _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-5-chloro-N-(4-cyclopropyl-4H-1,2,4-triazol-3-yl)-2,3-dihydro-1-benzofuran-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C8 MVX doub 246 n y N2 N1 MVX sing 247 n y C8 N3 MVX sing 248 n y N1 C7 MVX doub 249 n y N3 C7 MVX sing 250 n y N3 C9 MVX sing 251 n n C7 N MVX sing 252 n n N C6 MVX sing 253 n n C9 C10 MVX sing 254 n n C9 C11 MVX sing 255 n n C10 C11 MVX sing 256 n n O1 C6 MVX doub 257 n n C6 C5 MVX sing 258 n n CL C MVX sing 259 n n C13 C MVX doub 260 n y C13 C12 MVX sing 261 n y C C1 MVX sing 262 n y C5 C12 MVX sing 263 n n C5 C4 MVX sing 264 n n C12 C3 MVX doub 265 n y C1 C2 MVX doub 266 n y C3 C2 MVX sing 267 n y C3 O MVX sing 268 n n C4 O MVX sing 269 n n C4 H1 MVX sing 270 n n C4 H2 MVX sing 271 n n C5 H3 MVX sing 272 n n C8 H4 MVX sing 273 n n C10 H5 MVX sing 274 n n C10 H6 MVX sing 275 n n C13 H7 MVX sing 276 n n C2 H8 MVX sing 277 n n C1 H9 MVX sing 278 n n N H10 MVX sing 279 n n C9 H11 MVX sing 280 n n C11 H12 MVX sing 281 n n C11 H13 MVX sing 282 n n # _atom_sites.entry_id 7GDP _atom_sites.fract_transf_matrix[1][1] 0.008835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001818 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 MVX A 1 405 1101 MVX LIG . G 4 HOH A 1 501 72 HOH HOH . G 4 HOH A 2 502 182 HOH HOH . G 4 HOH A 3 503 269 HOH HOH . G 4 HOH A 4 504 39 HOH HOH . G 4 HOH A 5 505 35 HOH HOH . G 4 HOH A 6 506 86 HOH HOH . G 4 HOH A 7 507 149 HOH HOH . G 4 HOH A 8 508 293 HOH HOH . G 4 HOH A 9 509 104 HOH HOH . G 4 HOH A 10 510 9 HOH HOH . G 4 HOH A 11 511 144 HOH HOH . G 4 HOH A 12 512 142 HOH HOH . G 4 HOH A 13 513 75 HOH HOH . G 4 HOH A 14 514 29 HOH HOH . G 4 HOH A 15 515 92 HOH HOH . G 4 HOH A 16 516 43 HOH HOH . G 4 HOH A 17 517 110 HOH HOH . G 4 HOH A 18 518 10 HOH HOH . G 4 HOH A 19 519 4 HOH HOH . G 4 HOH A 20 520 54 HOH HOH . G 4 HOH A 21 521 67 HOH HOH . G 4 HOH A 22 522 102 HOH HOH . G 4 HOH A 23 523 243 HOH HOH . G 4 HOH A 24 524 34 HOH HOH . G 4 HOH A 25 525 31 HOH HOH . G 4 HOH A 26 526 165 HOH HOH . G 4 HOH A 27 527 123 HOH HOH . G 4 HOH A 28 528 217 HOH HOH . G 4 HOH A 29 529 1 HOH HOH . G 4 HOH A 30 530 62 HOH HOH . G 4 HOH A 31 531 101 HOH HOH . G 4 HOH A 32 532 126 HOH HOH . G 4 HOH A 33 533 24 HOH HOH . G 4 HOH A 34 534 61 HOH HOH . G 4 HOH A 35 535 141 HOH HOH . G 4 HOH A 36 536 76 HOH HOH . G 4 HOH A 37 537 96 HOH HOH . G 4 HOH A 38 538 268 HOH HOH . G 4 HOH A 39 539 143 HOH HOH . G 4 HOH A 40 540 161 HOH HOH . G 4 HOH A 41 541 264 HOH HOH . G 4 HOH A 42 542 52 HOH HOH . G 4 HOH A 43 543 85 HOH HOH . G 4 HOH A 44 544 47 HOH HOH . G 4 HOH A 45 545 66 HOH HOH . G 4 HOH A 46 546 93 HOH HOH . G 4 HOH A 47 547 81 HOH HOH . G 4 HOH A 48 548 11 HOH HOH . G 4 HOH A 49 549 207 HOH HOH . G 4 HOH A 50 550 88 HOH HOH . G 4 HOH A 51 551 114 HOH HOH . G 4 HOH A 52 552 20 HOH HOH . G 4 HOH A 53 553 71 HOH HOH . G 4 HOH A 54 554 37 HOH HOH . G 4 HOH A 55 555 218 HOH HOH . G 4 HOH A 56 556 64 HOH HOH . G 4 HOH A 57 557 133 HOH HOH . G 4 HOH A 58 558 271 HOH HOH . G 4 HOH A 59 559 177 HOH HOH . G 4 HOH A 60 560 184 HOH HOH . G 4 HOH A 61 561 6 HOH HOH . G 4 HOH A 62 562 211 HOH HOH . G 4 HOH A 63 563 25 HOH HOH . G 4 HOH A 64 564 282 HOH HOH . G 4 HOH A 65 565 115 HOH HOH . G 4 HOH A 66 566 42 HOH HOH . G 4 HOH A 67 567 98 HOH HOH . G 4 HOH A 68 568 26 HOH HOH . G 4 HOH A 69 569 12 HOH HOH . G 4 HOH A 70 570 135 HOH HOH . G 4 HOH A 71 571 79 HOH HOH . G 4 HOH A 72 572 3 HOH HOH . G 4 HOH A 73 573 68 HOH HOH . G 4 HOH A 74 574 291 HOH HOH . G 4 HOH A 75 575 21 HOH HOH . G 4 HOH A 76 576 15 HOH HOH . G 4 HOH A 77 577 17 HOH HOH . G 4 HOH A 78 578 5 HOH HOH . G 4 HOH A 79 579 87 HOH HOH . G 4 HOH A 80 580 214 HOH HOH . G 4 HOH A 81 581 275 HOH HOH . G 4 HOH A 82 582 30 HOH HOH . G 4 HOH A 83 583 27 HOH HOH . G 4 HOH A 84 584 125 HOH HOH . G 4 HOH A 85 585 28 HOH HOH . G 4 HOH A 86 586 83 HOH HOH . G 4 HOH A 87 587 78 HOH HOH . G 4 HOH A 88 588 234 HOH HOH . G 4 HOH A 89 589 155 HOH HOH . G 4 HOH A 90 590 260 HOH HOH . G 4 HOH A 91 591 111 HOH HOH . G 4 HOH A 92 592 19 HOH HOH . G 4 HOH A 93 593 84 HOH HOH . G 4 HOH A 94 594 112 HOH HOH . G 4 HOH A 95 595 153 HOH HOH . G 4 HOH A 96 596 74 HOH HOH . G 4 HOH A 97 597 168 HOH HOH . G 4 HOH A 98 598 2 HOH HOH . G 4 HOH A 99 599 63 HOH HOH . G 4 HOH A 100 600 13 HOH HOH . G 4 HOH A 101 601 242 HOH HOH . G 4 HOH A 102 602 166 HOH HOH . G 4 HOH A 103 603 287 HOH HOH . G 4 HOH A 104 604 58 HOH HOH . G 4 HOH A 105 605 286 HOH HOH . G 4 HOH A 106 606 298 HOH HOH . G 4 HOH A 107 607 100 HOH HOH . G 4 HOH A 108 608 169 HOH HOH . G 4 HOH A 109 609 150 HOH HOH . G 4 HOH A 110 610 99 HOH HOH . G 4 HOH A 111 611 7 HOH HOH . G 4 HOH A 112 612 265 HOH HOH . G 4 HOH A 113 613 219 HOH HOH . G 4 HOH A 114 614 94 HOH HOH . G 4 HOH A 115 615 261 HOH HOH . G 4 HOH A 116 616 80 HOH HOH . G 4 HOH A 117 617 152 HOH HOH . G 4 HOH A 118 618 60 HOH HOH . G 4 HOH A 119 619 14 HOH HOH . G 4 HOH A 120 620 56 HOH HOH . G 4 HOH A 121 621 38 HOH HOH . G 4 HOH A 122 622 139 HOH HOH . G 4 HOH A 123 623 77 HOH HOH . G 4 HOH A 124 624 51 HOH HOH . G 4 HOH A 125 625 122 HOH HOH . G 4 HOH A 126 626 198 HOH HOH . G 4 HOH A 127 627 50 HOH HOH . G 4 HOH A 128 628 46 HOH HOH . G 4 HOH A 129 629 180 HOH HOH . G 4 HOH A 130 630 163 HOH HOH . G 4 HOH A 131 631 95 HOH HOH . G 4 HOH A 132 632 107 HOH HOH . G 4 HOH A 133 633 190 HOH HOH . G 4 HOH A 134 634 32 HOH HOH . G 4 HOH A 135 635 18 HOH HOH . G 4 HOH A 136 636 301 HOH HOH . G 4 HOH A 137 637 136 HOH HOH . G 4 HOH A 138 638 108 HOH HOH . G 4 HOH A 139 639 57 HOH HOH . G 4 HOH A 140 640 8 HOH HOH . G 4 HOH A 141 641 41 HOH HOH . G 4 HOH A 142 642 59 HOH HOH . G 4 HOH A 143 643 16 HOH HOH . G 4 HOH A 144 644 124 HOH HOH . G 4 HOH A 145 645 208 HOH HOH . G 4 HOH A 146 646 23 HOH HOH . G 4 HOH A 147 647 200 HOH HOH . G 4 HOH A 148 648 239 HOH HOH . G 4 HOH A 149 649 236 HOH HOH . G 4 HOH A 150 650 53 HOH HOH . G 4 HOH A 151 651 117 HOH HOH . G 4 HOH A 152 652 186 HOH HOH . G 4 HOH A 153 653 283 HOH HOH . G 4 HOH A 154 654 129 HOH HOH . G 4 HOH A 155 655 237 HOH HOH . G 4 HOH A 156 656 202 HOH HOH . G 4 HOH A 157 657 262 HOH HOH . G 4 HOH A 158 658 296 HOH HOH . G 4 HOH A 159 659 255 HOH HOH . G 4 HOH A 160 660 113 HOH HOH . G 4 HOH A 161 661 22 HOH HOH . G 4 HOH A 162 662 171 HOH HOH . G 4 HOH A 163 663 244 HOH HOH . G 4 HOH A 164 664 91 HOH HOH . G 4 HOH A 165 665 33 HOH HOH . G 4 HOH A 166 666 257 HOH HOH . G 4 HOH A 167 667 221 HOH HOH . G 4 HOH A 168 668 120 HOH HOH . G 4 HOH A 169 669 272 HOH HOH . G 4 HOH A 170 670 70 HOH HOH . G 4 HOH A 171 671 252 HOH HOH . G 4 HOH A 172 672 201 HOH HOH . G 4 HOH A 173 673 188 HOH HOH . G 4 HOH A 174 674 302 HOH HOH . G 4 HOH A 175 675 278 HOH HOH . G 4 HOH A 176 676 157 HOH HOH . G 4 HOH A 177 677 49 HOH HOH . G 4 HOH A 178 678 220 HOH HOH . G 4 HOH A 179 679 172 HOH HOH . G 4 HOH A 180 680 195 HOH HOH . G 4 HOH A 181 681 230 HOH HOH . G 4 HOH A 182 682 90 HOH HOH . G 4 HOH A 183 683 228 HOH HOH . G 4 HOH A 184 684 222 HOH HOH . G 4 HOH A 185 685 203 HOH HOH . G 4 HOH A 186 686 191 HOH HOH . G 4 HOH A 187 687 216 HOH HOH . G 4 HOH A 188 688 300 HOH HOH . G 4 HOH A 189 689 294 HOH HOH . G 4 HOH A 190 690 183 HOH HOH . G 4 HOH A 191 691 116 HOH HOH . G 4 HOH A 192 692 254 HOH HOH . G 4 HOH A 193 693 175 HOH HOH . G 4 HOH A 194 694 109 HOH HOH . G 4 HOH A 195 695 151 HOH HOH . G 4 HOH A 196 696 241 HOH HOH . G 4 HOH A 197 697 137 HOH HOH . G 4 HOH A 198 698 280 HOH HOH . G 4 HOH A 199 699 266 HOH HOH . G 4 HOH A 200 700 263 HOH HOH . G 4 HOH A 201 701 297 HOH HOH . G 4 HOH A 202 702 277 HOH HOH . G 4 HOH A 203 703 235 HOH HOH . G 4 HOH A 204 704 89 HOH HOH . G 4 HOH A 205 705 288 HOH HOH . G 4 HOH A 206 706 105 HOH HOH . G 4 HOH A 207 707 121 HOH HOH . G 4 HOH A 208 708 226 HOH HOH . G 4 HOH A 209 709 145 HOH HOH . G 4 HOH A 210 710 295 HOH HOH . G 4 HOH A 211 711 154 HOH HOH . G 4 HOH A 212 712 40 HOH HOH . G 4 HOH A 213 713 290 HOH HOH . G 4 HOH A 214 714 146 HOH HOH . G 4 HOH A 215 715 118 HOH HOH . G 4 HOH A 216 716 193 HOH HOH . G 4 HOH A 217 717 48 HOH HOH . G 4 HOH A 218 718 127 HOH HOH . G 4 HOH A 219 719 69 HOH HOH . G 4 HOH A 220 720 189 HOH HOH . G 4 HOH A 221 721 231 HOH HOH . G 4 HOH A 222 722 97 HOH HOH . G 4 HOH A 223 723 199 HOH HOH . G 4 HOH A 224 724 256 HOH HOH . G 4 HOH A 225 725 258 HOH HOH . G 4 HOH A 226 726 289 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MVX . . . F 3 7.91 0.114 17.942 0.78 34.07 ? N1 MVX 405 A 1 HETATM 2 N N3 MVX . . . F 3 6.135 0.663 19.142 0.78 34.48 ? N3 MVX 405 A 1 HETATM 3 C C4 MVX . . . F 3 8.831 -0.073 23.577 0.78 37.01 ? C4 MVX 405 A 1 HETATM 4 C C5 MVX . . . F 3 9.283 -0.729 22.276 0.78 36.67 ? C5 MVX 405 A 1 HETATM 5 C C6 MVX . . . F 3 8.819 0.124 21.094 0.78 35.21 ? C6 MVX 405 A 1 HETATM 6 C C7 MVX . . . F 3 7.369 0.058 19.146 0.78 34.58 ? C7 MVX 405 A 1 HETATM 7 C C8 MVX . . . F 3 5.976 1.084 17.848 0.78 34.37 ? C8 MVX 405 A 1 HETATM 8 C C10 MVX . . . F 3 4.482 2.156 20.386 0.78 34.25 ? C10 MVX 405 A 1 HETATM 9 C C13 MVX . . . F 3 11.802 -1.301 21.707 0.78 37.68 ? C13 MVX 405 A 1 HETATM 10 O O1 MVX . . . F 3 9.22 1.267 20.908 0.78 34.24 ? O1 MVX 405 A 1 HETATM 11 O O MVX . . . F 3 9.993 0.645 24.075 0.78 37.61 ? O MVX 405 A 1 HETATM 12 C C12 MVX . . . F 3 10.789 -0.673 22.417 0.78 37.35 ? C12 MVX 405 A 1 HETATM 13 C C3 MVX . . . F 3 11.118 0.245 23.392 0.78 37.7 ? C3 MVX 405 A 1 HETATM 14 C C2 MVX . . . F 3 12.429 0.606 23.653 0.78 37.95 ? C2 MVX 405 A 1 HETATM 15 C C1 MVX . . . F 3 13.436 -0.002 22.924 0.78 38.12 ? C1 MVX 405 A 1 HETATM 16 C C MVX . . . F 3 13.11 -0.966 21.984 0.78 37.98 ? C MVX 405 A 1 HETATM 17 CL CL MVX . . . F 3 14.381 -1.851 21.207 0.78 38.64 ? CL MVX 405 A 1 HETATM 18 N N MVX . . . F 3 7.914 -0.478 20.278 0.78 35.07 ? N MVX 405 A 1 HETATM 19 N N2 MVX . . . F 3 7.011 0.775 17.121 0.78 33.87 ? N2 MVX 405 A 1 HETATM 20 C C9 MVX . . . F 3 5.222 0.866 20.289 0.78 34.25 ? C9 MVX 405 A 1 HETATM 21 C C11 MVX . . . F 3 5.604 1.859 21.332 0.78 34.1 ? C11 MVX 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #