data_7GDR # _model_server_result.job_id eGP8z-uN6UErznrLde4UQQ _model_server_result.datetime_utc '2024-11-21 09:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GDR # _exptl.entry_id 7GDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.85 _cell.angle_gamma 90 _cell.entry_id 7GDR _cell.length_a 111.949 _cell.length_b 52.75 _cell.length_c 44.337 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id MX9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MX9 _struct_conn.ptnr2_auth_seq_id 406 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.843 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GDR _atom_sites.fract_transf_matrix[1][1] 0.008933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1005 DMS DMS . F 2 DMS A 1 405 1006 DMS DMS . G 3 MX9 A 1 406 1101 MX9 LIG . H 4 HOH A 1 501 73 HOH HOH . H 4 HOH A 2 502 229 HOH HOH . H 4 HOH A 3 503 34 HOH HOH . H 4 HOH A 4 504 166 HOH HOH . H 4 HOH A 5 505 120 HOH HOH . H 4 HOH A 6 506 78 HOH HOH . H 4 HOH A 7 507 42 HOH HOH . H 4 HOH A 8 508 189 HOH HOH . H 4 HOH A 9 509 105 HOH HOH . H 4 HOH A 10 510 93 HOH HOH . H 4 HOH A 11 511 60 HOH HOH . H 4 HOH A 12 512 63 HOH HOH . H 4 HOH A 13 513 162 HOH HOH . H 4 HOH A 14 514 150 HOH HOH . H 4 HOH A 15 515 30 HOH HOH . H 4 HOH A 16 516 136 HOH HOH . H 4 HOH A 17 517 33 HOH HOH . H 4 HOH A 18 518 151 HOH HOH . H 4 HOH A 19 519 143 HOH HOH . H 4 HOH A 20 520 51 HOH HOH . H 4 HOH A 21 521 95 HOH HOH . H 4 HOH A 22 522 100 HOH HOH . H 4 HOH A 23 523 145 HOH HOH . H 4 HOH A 24 524 199 HOH HOH . H 4 HOH A 25 525 46 HOH HOH . H 4 HOH A 26 526 10 HOH HOH . H 4 HOH A 27 527 212 HOH HOH . H 4 HOH A 28 528 195 HOH HOH . H 4 HOH A 29 529 74 HOH HOH . H 4 HOH A 30 530 247 HOH HOH . H 4 HOH A 31 531 245 HOH HOH . H 4 HOH A 32 532 110 HOH HOH . H 4 HOH A 33 533 1 HOH HOH . H 4 HOH A 34 534 43 HOH HOH . H 4 HOH A 35 535 224 HOH HOH . H 4 HOH A 36 536 99 HOH HOH . H 4 HOH A 37 537 38 HOH HOH . H 4 HOH A 38 538 66 HOH HOH . H 4 HOH A 39 539 134 HOH HOH . H 4 HOH A 40 540 52 HOH HOH . H 4 HOH A 41 541 70 HOH HOH . H 4 HOH A 42 542 98 HOH HOH . H 4 HOH A 43 543 9 HOH HOH . H 4 HOH A 44 544 190 HOH HOH . H 4 HOH A 45 545 81 HOH HOH . H 4 HOH A 46 546 3 HOH HOH . H 4 HOH A 47 547 29 HOH HOH . H 4 HOH A 48 548 104 HOH HOH . H 4 HOH A 49 549 4 HOH HOH . H 4 HOH A 50 550 28 HOH HOH . H 4 HOH A 51 551 186 HOH HOH . H 4 HOH A 52 552 89 HOH HOH . H 4 HOH A 53 553 12 HOH HOH . H 4 HOH A 54 554 127 HOH HOH . H 4 HOH A 55 555 109 HOH HOH . H 4 HOH A 56 556 163 HOH HOH . H 4 HOH A 57 557 126 HOH HOH . H 4 HOH A 58 558 40 HOH HOH . H 4 HOH A 59 559 139 HOH HOH . H 4 HOH A 60 560 6 HOH HOH . H 4 HOH A 61 561 106 HOH HOH . H 4 HOH A 62 562 65 HOH HOH . H 4 HOH A 63 563 85 HOH HOH . H 4 HOH A 64 564 82 HOH HOH . H 4 HOH A 65 565 36 HOH HOH . H 4 HOH A 66 566 216 HOH HOH . H 4 HOH A 67 567 144 HOH HOH . H 4 HOH A 68 568 142 HOH HOH . H 4 HOH A 69 569 20 HOH HOH . H 4 HOH A 70 570 83 HOH HOH . H 4 HOH A 71 571 88 HOH HOH . H 4 HOH A 72 572 121 HOH HOH . H 4 HOH A 73 573 153 HOH HOH . H 4 HOH A 74 574 79 HOH HOH . H 4 HOH A 75 575 135 HOH HOH . H 4 HOH A 76 576 76 HOH HOH . H 4 HOH A 77 577 7 HOH HOH . H 4 HOH A 78 578 69 HOH HOH . H 4 HOH A 79 579 21 HOH HOH . H 4 HOH A 80 580 5 HOH HOH . H 4 HOH A 81 581 184 HOH HOH . H 4 HOH A 82 582 24 HOH HOH . H 4 HOH A 83 583 62 HOH HOH . H 4 HOH A 84 584 64 HOH HOH . H 4 HOH A 85 585 15 HOH HOH . H 4 HOH A 86 586 147 HOH HOH . H 4 HOH A 87 587 55 HOH HOH . H 4 HOH A 88 588 149 HOH HOH . H 4 HOH A 89 589 213 HOH HOH . H 4 HOH A 90 590 97 HOH HOH . H 4 HOH A 91 591 17 HOH HOH . H 4 HOH A 92 592 59 HOH HOH . H 4 HOH A 93 593 80 HOH HOH . H 4 HOH A 94 594 124 HOH HOH . H 4 HOH A 95 595 26 HOH HOH . H 4 HOH A 96 596 32 HOH HOH . H 4 HOH A 97 597 41 HOH HOH . H 4 HOH A 98 598 108 HOH HOH . H 4 HOH A 99 599 84 HOH HOH . H 4 HOH A 100 600 53 HOH HOH . H 4 HOH A 101 601 11 HOH HOH . H 4 HOH A 102 602 61 HOH HOH . H 4 HOH A 103 603 19 HOH HOH . H 4 HOH A 104 604 239 HOH HOH . H 4 HOH A 105 605 57 HOH HOH . H 4 HOH A 106 606 68 HOH HOH . H 4 HOH A 107 607 238 HOH HOH . H 4 HOH A 108 608 178 HOH HOH . H 4 HOH A 109 609 25 HOH HOH . H 4 HOH A 110 610 37 HOH HOH . H 4 HOH A 111 611 14 HOH HOH . H 4 HOH A 112 612 161 HOH HOH . H 4 HOH A 113 613 141 HOH HOH . H 4 HOH A 114 614 92 HOH HOH . H 4 HOH A 115 615 58 HOH HOH . H 4 HOH A 116 616 27 HOH HOH . H 4 HOH A 117 617 156 HOH HOH . H 4 HOH A 118 618 185 HOH HOH . H 4 HOH A 119 619 2 HOH HOH . H 4 HOH A 120 620 179 HOH HOH . H 4 HOH A 121 621 169 HOH HOH . H 4 HOH A 122 622 209 HOH HOH . H 4 HOH A 123 623 133 HOH HOH . H 4 HOH A 124 624 227 HOH HOH . H 4 HOH A 125 625 155 HOH HOH . H 4 HOH A 126 626 235 HOH HOH . H 4 HOH A 127 627 54 HOH HOH . H 4 HOH A 128 628 211 HOH HOH . H 4 HOH A 129 629 210 HOH HOH . H 4 HOH A 130 630 182 HOH HOH . H 4 HOH A 131 631 56 HOH HOH . H 4 HOH A 132 632 131 HOH HOH . H 4 HOH A 133 633 241 HOH HOH . H 4 HOH A 134 634 187 HOH HOH . H 4 HOH A 135 635 35 HOH HOH . H 4 HOH A 136 636 232 HOH HOH . H 4 HOH A 137 637 197 HOH HOH . H 4 HOH A 138 638 96 HOH HOH . H 4 HOH A 139 639 87 HOH HOH . H 4 HOH A 140 640 165 HOH HOH . H 4 HOH A 141 641 220 HOH HOH . H 4 HOH A 142 642 164 HOH HOH . H 4 HOH A 143 643 77 HOH HOH . H 4 HOH A 144 644 198 HOH HOH . H 4 HOH A 145 645 23 HOH HOH . H 4 HOH A 146 646 22 HOH HOH . H 4 HOH A 147 647 107 HOH HOH . H 4 HOH A 148 648 230 HOH HOH . H 4 HOH A 149 649 174 HOH HOH . H 4 HOH A 150 650 50 HOH HOH . H 4 HOH A 151 651 214 HOH HOH . H 4 HOH A 152 652 45 HOH HOH . H 4 HOH A 153 653 140 HOH HOH . H 4 HOH A 154 654 152 HOH HOH . H 4 HOH A 155 655 8 HOH HOH . H 4 HOH A 156 656 132 HOH HOH . H 4 HOH A 157 657 75 HOH HOH . H 4 HOH A 158 658 13 HOH HOH . H 4 HOH A 159 659 188 HOH HOH . H 4 HOH A 160 660 123 HOH HOH . H 4 HOH A 161 661 180 HOH HOH . H 4 HOH A 162 662 18 HOH HOH . H 4 HOH A 163 663 72 HOH HOH . H 4 HOH A 164 664 117 HOH HOH . H 4 HOH A 165 665 237 HOH HOH . H 4 HOH A 166 666 146 HOH HOH . H 4 HOH A 167 667 168 HOH HOH . H 4 HOH A 168 668 90 HOH HOH . H 4 HOH A 169 669 116 HOH HOH . H 4 HOH A 170 670 236 HOH HOH . H 4 HOH A 171 671 130 HOH HOH . H 4 HOH A 172 672 31 HOH HOH . H 4 HOH A 173 673 49 HOH HOH . H 4 HOH A 174 674 233 HOH HOH . H 4 HOH A 175 675 114 HOH HOH . H 4 HOH A 176 676 16 HOH HOH . H 4 HOH A 177 677 172 HOH HOH . H 4 HOH A 178 678 128 HOH HOH . H 4 HOH A 179 679 221 HOH HOH . H 4 HOH A 180 680 246 HOH HOH . H 4 HOH A 181 681 44 HOH HOH . H 4 HOH A 182 682 201 HOH HOH . H 4 HOH A 183 683 91 HOH HOH . H 4 HOH A 184 684 103 HOH HOH . H 4 HOH A 185 685 158 HOH HOH . H 4 HOH A 186 686 48 HOH HOH . H 4 HOH A 187 687 102 HOH HOH . H 4 HOH A 188 688 171 HOH HOH . H 4 HOH A 189 689 203 HOH HOH . H 4 HOH A 190 690 112 HOH HOH . H 4 HOH A 191 691 118 HOH HOH . H 4 HOH A 192 692 192 HOH HOH . H 4 HOH A 193 693 159 HOH HOH . H 4 HOH A 194 694 125 HOH HOH . H 4 HOH A 195 695 217 HOH HOH . H 4 HOH A 196 696 196 HOH HOH . H 4 HOH A 197 697 222 HOH HOH . H 4 HOH A 198 698 119 HOH HOH . H 4 HOH A 199 699 181 HOH HOH . H 4 HOH A 200 700 223 HOH HOH . H 4 HOH A 201 701 101 HOH HOH . H 4 HOH A 202 702 115 HOH HOH . H 4 HOH A 203 703 170 HOH HOH . H 4 HOH A 204 704 154 HOH HOH . H 4 HOH A 205 705 175 HOH HOH . H 4 HOH A 206 706 194 HOH HOH . H 4 HOH A 207 707 183 HOH HOH . H 4 HOH A 208 708 200 HOH HOH . H 4 HOH A 209 709 71 HOH HOH . H 4 HOH A 210 710 244 HOH HOH . H 4 HOH A 211 711 207 HOH HOH . H 4 HOH A 212 712 137 HOH HOH . H 4 HOH A 213 713 206 HOH HOH . H 4 HOH A 214 714 148 HOH HOH . H 4 HOH A 215 715 243 HOH HOH . H 4 HOH A 216 716 157 HOH HOH . H 4 HOH A 217 717 129 HOH HOH . H 4 HOH A 218 718 111 HOH HOH . H 4 HOH A 219 719 208 HOH HOH . H 4 HOH A 220 720 234 HOH HOH . H 4 HOH A 221 721 231 HOH HOH . H 4 HOH A 222 722 240 HOH HOH . H 4 HOH A 223 723 225 HOH HOH . H 4 HOH A 224 724 177 HOH HOH . H 4 HOH A 225 725 167 HOH HOH . H 4 HOH A 226 726 86 HOH HOH . H 4 HOH A 227 727 205 HOH HOH . H 4 HOH A 228 728 138 HOH HOH . H 4 HOH A 229 729 113 HOH HOH . H 4 HOH A 230 730 67 HOH HOH . H 4 HOH A 231 731 228 HOH HOH . H 4 HOH A 232 732 204 HOH HOH . H 4 HOH A 233 733 193 HOH HOH . H 4 HOH A 234 734 39 HOH HOH . H 4 HOH A 235 735 173 HOH HOH . H 4 HOH A 236 736 47 HOH HOH . H 4 HOH A 237 737 242 HOH HOH . H 4 HOH A 238 738 219 HOH HOH . H 4 HOH A 239 739 215 HOH HOH . H 4 HOH A 240 740 202 HOH HOH . H 4 HOH A 241 741 160 HOH HOH . H 4 HOH A 242 742 94 HOH HOH . H 4 HOH A 243 743 248 HOH HOH . H 4 HOH A 244 744 191 HOH HOH . H 4 HOH A 245 745 226 HOH HOH . H 4 HOH A 246 746 122 HOH HOH . H 4 HOH A 247 747 218 HOH HOH . H 4 HOH A 248 748 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 6.199 -1.049 -6.331 1 35.23 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 2 7.02 -0.763 -7.496 1 35.69 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 2 7.319 -0.984 -4.967 1 35.56 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 2 5.889 -2.777 -6.351 1 35.13 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #