data_7GDV # _model_server_result.job_id RUhnDhSA8mZOpca_M8LwKw _model_server_result.datetime_utc '2024-11-21 10:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GDV # _exptl.entry_id 7GDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.764 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-5-chloro-N-(4-phenyl-4H-1,2,4-triazol-3-yl)-2,3-dihydro-1-benzofuran-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.75 _cell.angle_gamma 90 _cell.entry_id 7GDV _cell.length_a 112.545 _cell.length_b 52.868 _cell.length_c 44.637 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H13 Cl N4 O2' _chem_comp.formula_weight 340.764 _chem_comp.id N0O _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-5-chloro-N-(4-phenyl-4H-1,2,4-triazol-3-yl)-2,3-dihydro-1-benzofuran-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C8 N0O doub 246 n y N2 N1 N0O sing 247 n y C8 N3 N0O sing 248 n y N1 C7 N0O doub 249 n y N3 C7 N0O sing 250 n y N3 C9 N0O sing 251 n n C7 N N0O sing 252 n n C9 C14 N0O doub 253 n y C9 C10 N0O sing 254 n y N C6 N0O sing 255 n n C14 C13 N0O sing 256 n y O1 C6 N0O doub 257 n n C6 C5 N0O sing 258 n n C10 C11 N0O doub 259 n y C13 C12 N0O doub 260 n y CL C N0O sing 261 n n C16 C N0O doub 262 n y C16 C15 N0O sing 263 n y C11 C12 N0O sing 264 n y C C1 N0O sing 265 n y C5 C15 N0O sing 266 n n C5 C4 N0O sing 267 n n C15 C3 N0O doub 268 n y C1 C2 N0O doub 269 n y C3 C2 N0O sing 270 n y C3 O N0O sing 271 n n C4 O N0O sing 272 n n C4 H1 N0O sing 273 n n C4 H2 N0O sing 274 n n C5 H3 N0O sing 275 n n C8 H4 N0O sing 276 n n C10 H5 N0O sing 277 n n C13 H6 N0O sing 278 n n C2 H7 N0O sing 279 n n C1 H8 N0O sing 280 n n C16 H9 N0O sing 281 n n N H10 N0O sing 282 n n C14 H11 N0O sing 283 n n C12 H12 N0O sing 284 n n C11 H13 N0O sing 285 n n # _atom_sites.entry_id 7GDV _atom_sites.fract_transf_matrix[1][1] 0.008885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 2 DMS A 1 404 1006 DMS DMS . F 3 N0O A 1 405 1101 N0O LIG . G 4 HOH A 1 501 62 HOH HOH . G 4 HOH A 2 502 81 HOH HOH . G 4 HOH A 3 503 47 HOH HOH . G 4 HOH A 4 504 86 HOH HOH . G 4 HOH A 5 505 72 HOH HOH . G 4 HOH A 6 506 163 HOH HOH . G 4 HOH A 7 507 260 HOH HOH . G 4 HOH A 8 508 109 HOH HOH . G 4 HOH A 9 509 96 HOH HOH . G 4 HOH A 10 510 65 HOH HOH . G 4 HOH A 11 511 288 HOH HOH . G 4 HOH A 12 512 35 HOH HOH . G 4 HOH A 13 513 115 HOH HOH . G 4 HOH A 14 514 44 HOH HOH . G 4 HOH A 15 515 269 HOH HOH . G 4 HOH A 16 516 211 HOH HOH . G 4 HOH A 17 517 160 HOH HOH . G 4 HOH A 18 518 34 HOH HOH . G 4 HOH A 19 519 207 HOH HOH . G 4 HOH A 20 520 152 HOH HOH . G 4 HOH A 21 521 1 HOH HOH . G 4 HOH A 22 522 24 HOH HOH . G 4 HOH A 23 523 43 HOH HOH . G 4 HOH A 24 524 29 HOH HOH . G 4 HOH A 25 525 98 HOH HOH . G 4 HOH A 26 526 142 HOH HOH . G 4 HOH A 27 527 104 HOH HOH . G 4 HOH A 28 528 144 HOH HOH . G 4 HOH A 29 529 9 HOH HOH . G 4 HOH A 30 530 182 HOH HOH . G 4 HOH A 31 531 54 HOH HOH . G 4 HOH A 32 532 76 HOH HOH . G 4 HOH A 33 533 101 HOH HOH . G 4 HOH A 34 534 286 HOH HOH . G 4 HOH A 35 535 130 HOH HOH . G 4 HOH A 36 536 92 HOH HOH . G 4 HOH A 37 537 26 HOH HOH . G 4 HOH A 38 538 268 HOH HOH . G 4 HOH A 39 539 15 HOH HOH . G 4 HOH A 40 540 61 HOH HOH . G 4 HOH A 41 541 197 HOH HOH . G 4 HOH A 42 542 41 HOH HOH . G 4 HOH A 43 543 12 HOH HOH . G 4 HOH A 44 544 205 HOH HOH . G 4 HOH A 45 545 110 HOH HOH . G 4 HOH A 46 546 141 HOH HOH . G 4 HOH A 47 547 20 HOH HOH . G 4 HOH A 48 548 278 HOH HOH . G 4 HOH A 49 549 30 HOH HOH . G 4 HOH A 50 550 217 HOH HOH . G 4 HOH A 51 551 68 HOH HOH . G 4 HOH A 52 552 53 HOH HOH . G 4 HOH A 53 553 6 HOH HOH . G 4 HOH A 54 554 71 HOH HOH . G 4 HOH A 55 555 239 HOH HOH . G 4 HOH A 56 556 91 HOH HOH . G 4 HOH A 57 557 52 HOH HOH . G 4 HOH A 58 558 7 HOH HOH . G 4 HOH A 59 559 4 HOH HOH . G 4 HOH A 60 560 10 HOH HOH . G 4 HOH A 61 561 57 HOH HOH . G 4 HOH A 62 562 59 HOH HOH . G 4 HOH A 63 563 82 HOH HOH . G 4 HOH A 64 564 21 HOH HOH . G 4 HOH A 65 565 220 HOH HOH . G 4 HOH A 66 566 64 HOH HOH . G 4 HOH A 67 567 37 HOH HOH . G 4 HOH A 68 568 5 HOH HOH . G 4 HOH A 69 569 133 HOH HOH . G 4 HOH A 70 570 11 HOH HOH . G 4 HOH A 71 571 27 HOH HOH . G 4 HOH A 72 572 3 HOH HOH . G 4 HOH A 73 573 63 HOH HOH . G 4 HOH A 74 574 83 HOH HOH . G 4 HOH A 75 575 14 HOH HOH . G 4 HOH A 76 576 17 HOH HOH . G 4 HOH A 77 577 42 HOH HOH . G 4 HOH A 78 578 102 HOH HOH . G 4 HOH A 79 579 271 HOH HOH . G 4 HOH A 80 580 210 HOH HOH . G 4 HOH A 81 581 28 HOH HOH . G 4 HOH A 82 582 122 HOH HOH . G 4 HOH A 83 583 283 HOH HOH . G 4 HOH A 84 584 19 HOH HOH . G 4 HOH A 85 585 177 HOH HOH . G 4 HOH A 86 586 190 HOH HOH . G 4 HOH A 87 587 112 HOH HOH . G 4 HOH A 88 588 113 HOH HOH . G 4 HOH A 89 589 84 HOH HOH . G 4 HOH A 90 590 38 HOH HOH . G 4 HOH A 91 591 221 HOH HOH . G 4 HOH A 92 592 135 HOH HOH . G 4 HOH A 93 593 60 HOH HOH . G 4 HOH A 94 594 93 HOH HOH . G 4 HOH A 95 595 95 HOH HOH . G 4 HOH A 96 596 58 HOH HOH . G 4 HOH A 97 597 165 HOH HOH . G 4 HOH A 98 598 240 HOH HOH . G 4 HOH A 99 599 257 HOH HOH . G 4 HOH A 100 600 178 HOH HOH . G 4 HOH A 101 601 2 HOH HOH . G 4 HOH A 102 602 99 HOH HOH . G 4 HOH A 103 603 13 HOH HOH . G 4 HOH A 104 604 169 HOH HOH . G 4 HOH A 105 605 139 HOH HOH . G 4 HOH A 106 606 204 HOH HOH . G 4 HOH A 107 607 56 HOH HOH . G 4 HOH A 108 608 74 HOH HOH . G 4 HOH A 109 609 46 HOH HOH . G 4 HOH A 110 610 80 HOH HOH . G 4 HOH A 111 611 150 HOH HOH . G 4 HOH A 112 612 18 HOH HOH . G 4 HOH A 113 613 287 HOH HOH . G 4 HOH A 114 614 208 HOH HOH . G 4 HOH A 115 615 235 HOH HOH . G 4 HOH A 116 616 33 HOH HOH . G 4 HOH A 117 617 87 HOH HOH . G 4 HOH A 118 618 184 HOH HOH . G 4 HOH A 119 619 166 HOH HOH . G 4 HOH A 120 620 265 HOH HOH . G 4 HOH A 121 621 202 HOH HOH . G 4 HOH A 122 622 51 HOH HOH . G 4 HOH A 123 623 117 HOH HOH . G 4 HOH A 124 624 100 HOH HOH . G 4 HOH A 125 625 251 HOH HOH . G 4 HOH A 126 626 195 HOH HOH . G 4 HOH A 127 627 228 HOH HOH . G 4 HOH A 128 628 263 HOH HOH . G 4 HOH A 129 629 219 HOH HOH . G 4 HOH A 130 630 119 HOH HOH . G 4 HOH A 131 631 200 HOH HOH . G 4 HOH A 132 632 183 HOH HOH . G 4 HOH A 133 633 264 HOH HOH . G 4 HOH A 134 634 188 HOH HOH . G 4 HOH A 135 635 23 HOH HOH . G 4 HOH A 136 636 218 HOH HOH . G 4 HOH A 137 637 186 HOH HOH . G 4 HOH A 138 638 236 HOH HOH . G 4 HOH A 139 639 282 HOH HOH . G 4 HOH A 140 640 32 HOH HOH . G 4 HOH A 141 641 140 HOH HOH . G 4 HOH A 142 642 77 HOH HOH . G 4 HOH A 143 643 107 HOH HOH . G 4 HOH A 144 644 136 HOH HOH . G 4 HOH A 145 645 22 HOH HOH . G 4 HOH A 146 646 50 HOH HOH . G 4 HOH A 147 647 106 HOH HOH . G 4 HOH A 148 648 267 HOH HOH . G 4 HOH A 149 649 198 HOH HOH . G 4 HOH A 150 650 16 HOH HOH . G 4 HOH A 151 651 157 HOH HOH . G 4 HOH A 152 652 131 HOH HOH . G 4 HOH A 153 653 233 HOH HOH . G 4 HOH A 154 654 196 HOH HOH . G 4 HOH A 155 655 199 HOH HOH . G 4 HOH A 156 656 244 HOH HOH . G 4 HOH A 157 657 262 HOH HOH . G 4 HOH A 158 658 138 HOH HOH . G 4 HOH A 159 659 173 HOH HOH . G 4 HOH A 160 660 120 HOH HOH . G 4 HOH A 161 661 280 HOH HOH . G 4 HOH A 162 662 194 HOH HOH . G 4 HOH A 163 663 248 HOH HOH . G 4 HOH A 164 664 49 HOH HOH . G 4 HOH A 165 665 191 HOH HOH . G 4 HOH A 166 666 73 HOH HOH . G 4 HOH A 167 667 281 HOH HOH . G 4 HOH A 168 668 222 HOH HOH . G 4 HOH A 169 669 116 HOH HOH . G 4 HOH A 170 670 232 HOH HOH . G 4 HOH A 171 671 137 HOH HOH . G 4 HOH A 172 672 79 HOH HOH . G 4 HOH A 173 673 216 HOH HOH . G 4 HOH A 174 674 105 HOH HOH . G 4 HOH A 175 675 168 HOH HOH . G 4 HOH A 176 676 237 HOH HOH . G 4 HOH A 177 677 252 HOH HOH . G 4 HOH A 178 678 254 HOH HOH . G 4 HOH A 179 679 266 HOH HOH . G 4 HOH A 180 680 114 HOH HOH . G 4 HOH A 181 681 285 HOH HOH . G 4 HOH A 182 682 118 HOH HOH . G 4 HOH A 183 683 154 HOH HOH . G 4 HOH A 184 684 189 HOH HOH . G 4 HOH A 185 685 289 HOH HOH . G 4 HOH A 186 686 69 HOH HOH . G 4 HOH A 187 687 241 HOH HOH . G 4 HOH A 188 688 146 HOH HOH . G 4 HOH A 189 689 40 HOH HOH . G 4 HOH A 190 690 247 HOH HOH . G 4 HOH A 191 691 89 HOH HOH . G 4 HOH A 192 692 48 HOH HOH . G 4 HOH A 193 693 111 HOH HOH . G 4 HOH A 194 694 284 HOH HOH . G 4 HOH A 195 695 227 HOH HOH . G 4 HOH A 196 696 256 HOH HOH . G 4 HOH A 197 697 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 N0O . . . F 3 6.917 -0.175 18.052 0.7 38.1 ? N1 N0O 405 A 1 HETATM 2 N N3 N0O . . . F 3 6.044 1.464 19.285 0.7 39.05 ? N3 N0O 405 A 1 HETATM 3 C C4 N0O . . . F 3 8.317 0.023 23.642 0.7 40.11 ? C4 N0O 405 A 1 HETATM 4 C C5 N0O . . . F 3 8.847 -0.562 22.34 0.7 39.49 ? C5 N0O 405 A 1 HETATM 5 C C6 N0O . . . F 3 8.422 0.363 21.2 0.7 38.39 ? C6 N0O 405 A 1 HETATM 6 C C7 N0O . . . F 3 6.783 0.273 19.285 0.7 38.54 ? C7 N0O 405 A 1 HETATM 7 C C8 N0O . . . F 3 5.808 1.684 17.95 0.7 38.46 ? C8 N0O 405 A 1 HETATM 8 C C10 N0O . . . F 3 6.293 2.959 21.223 0.7 39.98 ? C10 N0O 405 A 1 HETATM 9 C C13 N0O . . . F 3 3.546 3.352 21.288 0.7 40.31 ? C13 N0O 405 A 1 HETATM 10 C C15 N0O . . . F 3 10.338 -0.454 22.553 0.7 40.21 ? C15 N0O 405 A 1 HETATM 11 O O1 N0O . . . F 3 8.977 1.438 20.98 0.7 37.09 ? O1 N0O 405 A 1 HETATM 12 O O N0O . . . F 3 9.395 0.867 24.139 0.7 40.46 ? O N0O 405 A 1 HETATM 13 C C3 N0O . . . F 3 10.579 0.403 23.608 0.7 40.5 ? C3 N0O 405 A 1 HETATM 14 C C2 N0O . . . F 3 11.861 0.721 24.019 0.7 41.03 ? C2 N0O 405 A 1 HETATM 15 C C1 N0O . . . F 3 12.931 0.162 23.338 0.7 41.43 ? C1 N0O 405 A 1 HETATM 16 C C16 N0O . . . F 3 11.41 -1.027 21.883 0.7 40.86 ? C16 N0O 405 A 1 HETATM 17 C C N0O . . . F 3 12.691 -0.703 22.282 0.7 41.67 ? C N0O 405 A 1 HETATM 18 CL CL N0O . . . F 3 14.036 -1.381 21.415 0.7 42.69 ? CL N0O 405 A 1 HETATM 19 N N N0O . . . F 3 7.513 -0.166 20.346 0.7 38.51 ? N N0O 405 A 1 HETATM 20 N N2 N0O . . . F 3 6.314 0.74 17.212 0.7 37.98 ? N2 N0O 405 A 1 HETATM 21 C C9 N0O . . . F 3 5.47 2.26 20.341 0.7 39.71 ? C9 N0O 405 A 1 HETATM 22 C C14 N0O . . . F 3 4.089 2.449 20.384 0.7 40.12 ? C14 N0O 405 A 1 HETATM 23 C C12 N0O . . . F 3 4.365 4.058 22.148 0.7 40.13 ? C12 N0O 405 A 1 HETATM 24 C C11 N0O . . . F 3 5.733 3.858 22.119 0.7 40.13 ? C11 N0O 405 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 24 #