data_7GF9 # _model_server_result.job_id dKFl0x0-NkGPDo0pkF2K3A _model_server_result.datetime_utc '2024-11-21 11:22:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GF9 # _exptl.entry_id 7GF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.308 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4S)-3-(4-fluorobenzoyl)-2-methylindolizin-1-yl]ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.28 _cell.angle_gamma 90 _cell.entry_id 7GF9 _cell.length_a 113.322 _cell.length_b 53.191 _cell.length_c 44.667 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C4 _struct_conn.ptnr2_label_comp_id O5C _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id O5C _struct_conn.ptnr2_auth_seq_id 404 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.727 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H14 F N O2' _chem_comp.formula_weight 295.308 _chem_comp.id O5C _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4S)-3-(4-fluorobenzoyl)-2-methylindolizin-1-yl]ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 O5C sing 246 n n O C3 O5C doub 247 n n C3 C2 O5C sing 248 n n C C1 O5C sing 249 n n C2 C1 O5C sing 250 n y C2 C5 O5C doub 251 n y C1 C10 O5C doub 252 n y C5 C6 O5C sing 253 n y C5 N O5C sing 254 n y C6 C7 O5C doub 255 n y C14 C13 O5C doub 256 n y C14 C15 O5C sing 257 n y F C15 O5C sing 258 n n C13 C12 O5C sing 259 n y C10 N O5C sing 260 n y C10 C11 O5C sing 261 n n C15 C16 O5C doub 262 n y N C9 O5C sing 263 n y C7 C8 O5C sing 264 n y C12 C11 O5C sing 265 n n C12 C17 O5C doub 266 n y C16 C17 O5C sing 267 n y C11 O1 O5C doub 268 n n C9 C8 O5C doub 269 n y C4 H1 O5C sing 270 n n C4 H2 O5C sing 271 n n C4 H3 O5C sing 272 n n C6 H4 O5C sing 273 n n C7 H5 O5C sing 274 n n C8 H6 O5C sing 275 n n C13 H7 O5C sing 276 n n C17 H8 O5C sing 277 n n C14 H9 O5C sing 278 n n C16 H10 O5C sing 279 n n C H11 O5C sing 280 n n C H12 O5C sing 281 n n C H13 O5C sing 282 n n C9 H14 O5C sing 283 n n # _atom_sites.entry_id 7GF9 _atom_sites.fract_transf_matrix[1][1] 0.008824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 O5C A 1 404 1101 O5C LIG . F 4 HOH A 1 501 159 HOH HOH . F 4 HOH A 2 502 210 HOH HOH . F 4 HOH A 3 503 70 HOH HOH . F 4 HOH A 4 504 231 HOH HOH . F 4 HOH A 5 505 60 HOH HOH . F 4 HOH A 6 506 91 HOH HOH . F 4 HOH A 7 507 136 HOH HOH . F 4 HOH A 8 508 261 HOH HOH . F 4 HOH A 9 509 36 HOH HOH . F 4 HOH A 10 510 79 HOH HOH . F 4 HOH A 11 511 1 HOH HOH . F 4 HOH A 12 512 254 HOH HOH . F 4 HOH A 13 513 76 HOH HOH . F 4 HOH A 14 514 73 HOH HOH . F 4 HOH A 15 515 110 HOH HOH . F 4 HOH A 16 516 27 HOH HOH . F 4 HOH A 17 517 157 HOH HOH . F 4 HOH A 18 518 42 HOH HOH . F 4 HOH A 19 519 9 HOH HOH . F 4 HOH A 20 520 34 HOH HOH . F 4 HOH A 21 521 204 HOH HOH . F 4 HOH A 22 522 21 HOH HOH . F 4 HOH A 23 523 63 HOH HOH . F 4 HOH A 24 524 124 HOH HOH . F 4 HOH A 25 525 190 HOH HOH . F 4 HOH A 26 526 4 HOH HOH . F 4 HOH A 27 527 115 HOH HOH . F 4 HOH A 28 528 263 HOH HOH . F 4 HOH A 29 529 37 HOH HOH . F 4 HOH A 30 530 278 HOH HOH . F 4 HOH A 31 531 35 HOH HOH . F 4 HOH A 32 532 160 HOH HOH . F 4 HOH A 33 533 155 HOH HOH . F 4 HOH A 34 534 10 HOH HOH . F 4 HOH A 35 535 77 HOH HOH . F 4 HOH A 36 536 62 HOH HOH . F 4 HOH A 37 537 50 HOH HOH . F 4 HOH A 38 538 11 HOH HOH . F 4 HOH A 39 539 74 HOH HOH . F 4 HOH A 40 540 29 HOH HOH . F 4 HOH A 41 541 102 HOH HOH . F 4 HOH A 42 542 247 HOH HOH . F 4 HOH A 43 543 69 HOH HOH . F 4 HOH A 44 544 161 HOH HOH . F 4 HOH A 45 545 96 HOH HOH . F 4 HOH A 46 546 142 HOH HOH . F 4 HOH A 47 547 164 HOH HOH . F 4 HOH A 48 548 20 HOH HOH . F 4 HOH A 49 549 40 HOH HOH . F 4 HOH A 50 550 52 HOH HOH . F 4 HOH A 51 551 84 HOH HOH . F 4 HOH A 52 552 80 HOH HOH . F 4 HOH A 53 553 265 HOH HOH . F 4 HOH A 54 554 75 HOH HOH . F 4 HOH A 55 555 3 HOH HOH . F 4 HOH A 56 556 175 HOH HOH . F 4 HOH A 57 557 19 HOH HOH . F 4 HOH A 58 558 30 HOH HOH . F 4 HOH A 59 559 66 HOH HOH . F 4 HOH A 60 560 86 HOH HOH . F 4 HOH A 61 561 59 HOH HOH . F 4 HOH A 62 562 12 HOH HOH . F 4 HOH A 63 563 5 HOH HOH . F 4 HOH A 64 564 6 HOH HOH . F 4 HOH A 65 565 41 HOH HOH . F 4 HOH A 66 566 271 HOH HOH . F 4 HOH A 67 567 260 HOH HOH . F 4 HOH A 68 568 15 HOH HOH . F 4 HOH A 69 569 200 HOH HOH . F 4 HOH A 70 570 24 HOH HOH . F 4 HOH A 71 571 203 HOH HOH . F 4 HOH A 72 572 249 HOH HOH . F 4 HOH A 73 573 229 HOH HOH . F 4 HOH A 74 574 45 HOH HOH . F 4 HOH A 75 575 28 HOH HOH . F 4 HOH A 76 576 176 HOH HOH . F 4 HOH A 77 577 129 HOH HOH . F 4 HOH A 78 578 98 HOH HOH . F 4 HOH A 79 579 267 HOH HOH . F 4 HOH A 80 580 100 HOH HOH . F 4 HOH A 81 581 83 HOH HOH . F 4 HOH A 82 582 55 HOH HOH . F 4 HOH A 83 583 17 HOH HOH . F 4 HOH A 84 584 135 HOH HOH . F 4 HOH A 85 585 92 HOH HOH . F 4 HOH A 86 586 171 HOH HOH . F 4 HOH A 87 587 82 HOH HOH . F 4 HOH A 88 588 97 HOH HOH . F 4 HOH A 89 589 7 HOH HOH . F 4 HOH A 90 590 54 HOH HOH . F 4 HOH A 91 591 39 HOH HOH . F 4 HOH A 92 592 49 HOH HOH . F 4 HOH A 93 593 44 HOH HOH . F 4 HOH A 94 594 272 HOH HOH . F 4 HOH A 95 595 14 HOH HOH . F 4 HOH A 96 596 144 HOH HOH . F 4 HOH A 97 597 68 HOH HOH . F 4 HOH A 98 598 172 HOH HOH . F 4 HOH A 99 599 280 HOH HOH . F 4 HOH A 100 600 212 HOH HOH . F 4 HOH A 101 601 163 HOH HOH . F 4 HOH A 102 602 253 HOH HOH . F 4 HOH A 103 603 13 HOH HOH . F 4 HOH A 104 604 64 HOH HOH . F 4 HOH A 105 605 89 HOH HOH . F 4 HOH A 106 606 26 HOH HOH . F 4 HOH A 107 607 58 HOH HOH . F 4 HOH A 108 608 93 HOH HOH . F 4 HOH A 109 609 90 HOH HOH . F 4 HOH A 110 610 8 HOH HOH . F 4 HOH A 111 611 191 HOH HOH . F 4 HOH A 112 612 230 HOH HOH . F 4 HOH A 113 613 2 HOH HOH . F 4 HOH A 114 614 104 HOH HOH . F 4 HOH A 115 615 18 HOH HOH . F 4 HOH A 116 616 106 HOH HOH . F 4 HOH A 117 617 147 HOH HOH . F 4 HOH A 118 618 211 HOH HOH . F 4 HOH A 119 619 277 HOH HOH . F 4 HOH A 120 620 127 HOH HOH . F 4 HOH A 121 621 214 HOH HOH . F 4 HOH A 122 622 53 HOH HOH . F 4 HOH A 123 623 108 HOH HOH . F 4 HOH A 124 624 81 HOH HOH . F 4 HOH A 125 625 169 HOH HOH . F 4 HOH A 126 626 57 HOH HOH . F 4 HOH A 127 627 242 HOH HOH . F 4 HOH A 128 628 23 HOH HOH . F 4 HOH A 129 629 61 HOH HOH . F 4 HOH A 130 630 118 HOH HOH . F 4 HOH A 131 631 112 HOH HOH . F 4 HOH A 132 632 256 HOH HOH . F 4 HOH A 133 633 154 HOH HOH . F 4 HOH A 134 634 22 HOH HOH . F 4 HOH A 135 635 32 HOH HOH . F 4 HOH A 136 636 133 HOH HOH . F 4 HOH A 137 637 33 HOH HOH . F 4 HOH A 138 638 48 HOH HOH . F 4 HOH A 139 639 181 HOH HOH . F 4 HOH A 140 640 146 HOH HOH . F 4 HOH A 141 641 279 HOH HOH . F 4 HOH A 142 642 111 HOH HOH . F 4 HOH A 143 643 99 HOH HOH . F 4 HOH A 144 644 72 HOH HOH . F 4 HOH A 145 645 120 HOH HOH . F 4 HOH A 146 646 221 HOH HOH . F 4 HOH A 147 647 56 HOH HOH . F 4 HOH A 148 648 78 HOH HOH . F 4 HOH A 149 649 137 HOH HOH . F 4 HOH A 150 650 125 HOH HOH . F 4 HOH A 151 651 167 HOH HOH . F 4 HOH A 152 652 162 HOH HOH . F 4 HOH A 153 653 51 HOH HOH . F 4 HOH A 154 654 237 HOH HOH . F 4 HOH A 155 655 202 HOH HOH . F 4 HOH A 156 656 105 HOH HOH . F 4 HOH A 157 657 141 HOH HOH . F 4 HOH A 158 658 275 HOH HOH . F 4 HOH A 159 659 173 HOH HOH . F 4 HOH A 160 660 194 HOH HOH . F 4 HOH A 161 661 109 HOH HOH . F 4 HOH A 162 662 270 HOH HOH . F 4 HOH A 163 663 16 HOH HOH . F 4 HOH A 164 664 243 HOH HOH . F 4 HOH A 165 665 130 HOH HOH . F 4 HOH A 166 666 274 HOH HOH . F 4 HOH A 167 667 166 HOH HOH . F 4 HOH A 168 668 116 HOH HOH . F 4 HOH A 169 669 232 HOH HOH . F 4 HOH A 170 670 226 HOH HOH . F 4 HOH A 171 671 174 HOH HOH . F 4 HOH A 172 672 241 HOH HOH . F 4 HOH A 173 673 183 HOH HOH . F 4 HOH A 174 674 206 HOH HOH . F 4 HOH A 175 675 266 HOH HOH . F 4 HOH A 176 676 236 HOH HOH . F 4 HOH A 177 677 216 HOH HOH . F 4 HOH A 178 678 195 HOH HOH . F 4 HOH A 179 679 233 HOH HOH . F 4 HOH A 180 680 148 HOH HOH . F 4 HOH A 181 681 184 HOH HOH . F 4 HOH A 182 682 244 HOH HOH . F 4 HOH A 183 683 269 HOH HOH . F 4 HOH A 184 684 43 HOH HOH . F 4 HOH A 185 685 177 HOH HOH . F 4 HOH A 186 686 257 HOH HOH . F 4 HOH A 187 687 71 HOH HOH . F 4 HOH A 188 688 198 HOH HOH . F 4 HOH A 189 689 47 HOH HOH . F 4 HOH A 190 690 131 HOH HOH . F 4 HOH A 191 691 223 HOH HOH . F 4 HOH A 192 692 209 HOH HOH . F 4 HOH A 193 693 153 HOH HOH . F 4 HOH A 194 694 145 HOH HOH . F 4 HOH A 195 695 246 HOH HOH . F 4 HOH A 196 696 192 HOH HOH . F 4 HOH A 197 697 88 HOH HOH . F 4 HOH A 198 698 186 HOH HOH . F 4 HOH A 199 699 128 HOH HOH . F 4 HOH A 200 700 103 HOH HOH . F 4 HOH A 201 701 123 HOH HOH . F 4 HOH A 202 702 182 HOH HOH . F 4 HOH A 203 703 87 HOH HOH . F 4 HOH A 204 704 276 HOH HOH . F 4 HOH A 205 705 113 HOH HOH . F 4 HOH A 206 706 140 HOH HOH . F 4 HOH A 207 707 46 HOH HOH . F 4 HOH A 208 708 264 HOH HOH . F 4 HOH A 209 709 67 HOH HOH . F 4 HOH A 210 710 38 HOH HOH . F 4 HOH A 211 711 248 HOH HOH . F 4 HOH A 212 712 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O5C . . . E 3 7.505 -2.605 18.792 0.75 39.21 ? C4 O5C 404 A 1 HETATM 2 C C5 O5C . . . E 3 7.01 -4.299 22.277 0.75 41.78 ? C5 O5C 404 A 1 HETATM 3 C C6 O5C . . . E 3 6.196 -5.461 22.319 0.75 41.75 ? C6 O5C 404 A 1 HETATM 4 C C7 O5C . . . E 3 5.964 -6.07 23.51 0.75 41.91 ? C7 O5C 404 A 1 HETATM 5 C C8 O5C . . . E 3 6.539 -5.571 24.704 0.75 42.05 ? C8 O5C 404 A 1 HETATM 6 C C10 O5C . . . E 3 8.283 -2.656 23.219 0.75 42.33 ? C10 O5C 404 A 1 HETATM 7 C C13 O5C . . . E 3 11.254 -1.949 23.148 0.75 44.27 ? C13 O5C 404 A 1 HETATM 8 C C15 O5C . . . E 3 12.672 -0.06 23.281 0.75 44.56 ? C15 O5C 404 A 1 HETATM 9 C C17 O5C . . . E 3 10.658 -0.07 24.517 0.75 43.8 ? C17 O5C 404 A 1 HETATM 10 F F O5C . . . E 3 13.86 0.536 22.981 0.75 44.87 ? F O5C 404 A 1 HETATM 11 C C14 O5C . . . E 3 12.41 -1.3 22.754 0.75 44.58 ? C14 O5C 404 A 1 HETATM 12 C C16 O5C . . . E 3 11.827 0.573 24.153 0.75 44.05 ? C16 O5C 404 A 1 HETATM 13 C C12 O5C . . . E 3 10.351 -1.333 24.012 0.75 43.94 ? C12 O5C 404 A 1 HETATM 14 C C11 O5C . . . E 3 9.022 -1.942 24.303 0.75 43.46 ? C11 O5C 404 A 1 HETATM 15 O O1 O5C . . . E 3 8.509 -1.804 25.415 0.75 43.69 ? O1 O5C 404 A 1 HETATM 16 C C1 O5C . . . E 3 8.142 -2.336 21.848 0.75 41.45 ? C1 O5C 404 A 1 HETATM 17 C C O5C . . . E 3 8.644 -1.116 21.13 0.75 41.13 ? C O5C 404 A 1 HETATM 18 N N O5C . . . E 3 7.577 -3.838 23.47 0.75 42.18 ? N O5C 404 A 1 HETATM 19 C C9 O5C . . . E 3 7.339 -4.484 24.672 0.75 41.99 ? C9 O5C 404 A 1 HETATM 20 C C2 O5C . . . E 3 7.351 -3.392 21.258 0.75 41.09 ? C2 O5C 404 A 1 HETATM 21 C C3 O5C . . . E 3 6.947 -3.534 19.847 0.75 39.76 ? C3 O5C 404 A 1 HETATM 22 O O O5C . . . E 3 6.148 -4.406 19.547 0.75 39.28 ? O O5C 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #