data_7GFX # _model_server_result.job_id htTLSqYK2ioqca4rDB9sNw _model_server_result.datetime_utc '2025-01-28 22:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GFX # _exptl.entry_id 7GFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.756 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3-chlorophenyl)-N-(6,7-dihydro-5H-cyclopenta[c]pyridin-4-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.29 _cell.angle_gamma 90 _cell.entry_id 7GFX _cell.length_a 113.409 _cell.length_b 53.303 _cell.length_c 44.385 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H15 Cl N2 O' _chem_comp.formula_weight 286.756 _chem_comp.id OKW _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3-chlorophenyl)-N-(6,7-dihydro-5H-cyclopenta[c]pyridin-4-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 OKW doub 246 n y N1 C8 OKW sing 247 n y C9 C10 OKW sing 248 n y C8 C7 OKW doub 249 n y C10 C11 OKW sing 250 n n C10 C14 OKW doub 251 n y C11 C12 OKW sing 252 n n C7 C14 OKW sing 253 n y C7 N OKW sing 254 n n C14 C13 OKW sing 255 n n N C6 OKW sing 256 n n CL C OKW sing 257 n n O C6 OKW doub 258 n n C12 C13 OKW sing 259 n n C6 C5 OKW sing 260 n n C15 C OKW doub 261 n y C15 C4 OKW sing 262 n y C C1 OKW sing 263 n y C5 C4 OKW sing 264 n n C4 C3 OKW doub 265 n y C1 C2 OKW doub 266 n y C3 C2 OKW sing 267 n y C5 H1 OKW sing 268 n n C5 H2 OKW sing 269 n n C8 H3 OKW sing 270 n n C13 H4 OKW sing 271 n n C13 H5 OKW sing 272 n n C15 H6 OKW sing 273 n n C3 H7 OKW sing 274 n n C2 H8 OKW sing 275 n n C1 H9 OKW sing 276 n n N H10 OKW sing 277 n n C12 H11 OKW sing 278 n n C12 H12 OKW sing 279 n n C11 H13 OKW sing 280 n n C11 H14 OKW sing 281 n n C9 H15 OKW sing 282 n n # _atom_sites.entry_id 7GFX _atom_sites.fract_transf_matrix[1][1] 0.008818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00176 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OKW A 1 404 1101 OKW LIG . F 4 HOH A 1 501 263 HOH HOH . F 4 HOH A 2 502 285 HOH HOH . F 4 HOH A 3 503 119 HOH HOH . F 4 HOH A 4 504 101 HOH HOH . F 4 HOH A 5 505 29 HOH HOH . F 4 HOH A 6 506 261 HOH HOH . F 4 HOH A 7 507 10 HOH HOH . F 4 HOH A 8 508 215 HOH HOH . F 4 HOH A 9 509 138 HOH HOH . F 4 HOH A 10 510 252 HOH HOH . F 4 HOH A 11 511 9 HOH HOH . F 4 HOH A 12 512 35 HOH HOH . F 4 HOH A 13 513 94 HOH HOH . F 4 HOH A 14 514 229 HOH HOH . F 4 HOH A 15 515 135 HOH HOH . F 4 HOH A 16 516 151 HOH HOH . F 4 HOH A 17 517 175 HOH HOH . F 4 HOH A 18 518 102 HOH HOH . F 4 HOH A 19 519 34 HOH HOH . F 4 HOH A 20 520 37 HOH HOH . F 4 HOH A 21 521 73 HOH HOH . F 4 HOH A 22 522 292 HOH HOH . F 4 HOH A 23 523 177 HOH HOH . F 4 HOH A 24 524 74 HOH HOH . F 4 HOH A 25 525 100 HOH HOH . F 4 HOH A 26 526 107 HOH HOH . F 4 HOH A 27 527 1 HOH HOH . F 4 HOH A 28 528 143 HOH HOH . F 4 HOH A 29 529 25 HOH HOH . F 4 HOH A 30 530 210 HOH HOH . F 4 HOH A 31 531 31 HOH HOH . F 4 HOH A 32 532 142 HOH HOH . F 4 HOH A 33 533 160 HOH HOH . F 4 HOH A 34 534 70 HOH HOH . F 4 HOH A 35 535 170 HOH HOH . F 4 HOH A 36 536 155 HOH HOH . F 4 HOH A 37 537 21 HOH HOH . F 4 HOH A 38 538 149 HOH HOH . F 4 HOH A 39 539 79 HOH HOH . F 4 HOH A 40 540 50 HOH HOH . F 4 HOH A 41 541 96 HOH HOH . F 4 HOH A 42 542 59 HOH HOH . F 4 HOH A 43 543 4 HOH HOH . F 4 HOH A 44 544 90 HOH HOH . F 4 HOH A 45 545 36 HOH HOH . F 4 HOH A 46 546 66 HOH HOH . F 4 HOH A 47 547 53 HOH HOH . F 4 HOH A 48 548 211 HOH HOH . F 4 HOH A 49 549 33 HOH HOH . F 4 HOH A 50 550 60 HOH HOH . F 4 HOH A 51 551 77 HOH HOH . F 4 HOH A 52 552 203 HOH HOH . F 4 HOH A 53 553 271 HOH HOH . F 4 HOH A 54 554 236 HOH HOH . F 4 HOH A 55 555 278 HOH HOH . F 4 HOH A 56 556 17 HOH HOH . F 4 HOH A 57 557 120 HOH HOH . F 4 HOH A 58 558 280 HOH HOH . F 4 HOH A 59 559 110 HOH HOH . F 4 HOH A 60 560 124 HOH HOH . F 4 HOH A 61 561 99 HOH HOH . F 4 HOH A 62 562 159 HOH HOH . F 4 HOH A 63 563 62 HOH HOH . F 4 HOH A 64 564 83 HOH HOH . F 4 HOH A 65 565 117 HOH HOH . F 4 HOH A 66 566 40 HOH HOH . F 4 HOH A 67 567 42 HOH HOH . F 4 HOH A 68 568 137 HOH HOH . F 4 HOH A 69 569 148 HOH HOH . F 4 HOH A 70 570 41 HOH HOH . F 4 HOH A 71 571 49 HOH HOH . F 4 HOH A 72 572 108 HOH HOH . F 4 HOH A 73 573 256 HOH HOH . F 4 HOH A 74 574 219 HOH HOH . F 4 HOH A 75 575 11 HOH HOH . F 4 HOH A 76 576 69 HOH HOH . F 4 HOH A 77 577 200 HOH HOH . F 4 HOH A 78 578 3 HOH HOH . F 4 HOH A 79 579 91 HOH HOH . F 4 HOH A 80 580 88 HOH HOH . F 4 HOH A 81 581 118 HOH HOH . F 4 HOH A 82 582 20 HOH HOH . F 4 HOH A 83 583 267 HOH HOH . F 4 HOH A 84 584 24 HOH HOH . F 4 HOH A 85 585 28 HOH HOH . F 4 HOH A 86 586 12 HOH HOH . F 4 HOH A 87 587 55 HOH HOH . F 4 HOH A 88 588 282 HOH HOH . F 4 HOH A 89 589 279 HOH HOH . F 4 HOH A 90 590 274 HOH HOH . F 4 HOH A 91 591 64 HOH HOH . F 4 HOH A 92 592 287 HOH HOH . F 4 HOH A 93 593 16 HOH HOH . F 4 HOH A 94 594 75 HOH HOH . F 4 HOH A 95 595 127 HOH HOH . F 4 HOH A 96 596 52 HOH HOH . F 4 HOH A 97 597 232 HOH HOH . F 4 HOH A 98 598 86 HOH HOH . F 4 HOH A 99 599 6 HOH HOH . F 4 HOH A 100 600 19 HOH HOH . F 4 HOH A 101 601 5 HOH HOH . F 4 HOH A 102 602 156 HOH HOH . F 4 HOH A 103 603 129 HOH HOH . F 4 HOH A 104 604 286 HOH HOH . F 4 HOH A 105 605 76 HOH HOH . F 4 HOH A 106 606 30 HOH HOH . F 4 HOH A 107 607 164 HOH HOH . F 4 HOH A 108 608 15 HOH HOH . F 4 HOH A 109 609 122 HOH HOH . F 4 HOH A 110 610 161 HOH HOH . F 4 HOH A 111 611 123 HOH HOH . F 4 HOH A 112 612 82 HOH HOH . F 4 HOH A 113 613 231 HOH HOH . F 4 HOH A 114 614 207 HOH HOH . F 4 HOH A 115 615 81 HOH HOH . F 4 HOH A 116 616 68 HOH HOH . F 4 HOH A 117 617 14 HOH HOH . F 4 HOH A 118 618 65 HOH HOH . F 4 HOH A 119 619 97 HOH HOH . F 4 HOH A 120 620 162 HOH HOH . F 4 HOH A 121 621 289 HOH HOH . F 4 HOH A 122 622 58 HOH HOH . F 4 HOH A 123 623 281 HOH HOH . F 4 HOH A 124 624 39 HOH HOH . F 4 HOH A 125 625 275 HOH HOH . F 4 HOH A 126 626 57 HOH HOH . F 4 HOH A 127 627 27 HOH HOH . F 4 HOH A 128 628 144 HOH HOH . F 4 HOH A 129 629 190 HOH HOH . F 4 HOH A 130 630 141 HOH HOH . F 4 HOH A 131 631 104 HOH HOH . F 4 HOH A 132 632 7 HOH HOH . F 4 HOH A 133 633 61 HOH HOH . F 4 HOH A 134 634 85 HOH HOH . F 4 HOH A 135 635 112 HOH HOH . F 4 HOH A 136 636 26 HOH HOH . F 4 HOH A 137 637 193 HOH HOH . F 4 HOH A 138 638 133 HOH HOH . F 4 HOH A 139 639 212 HOH HOH . F 4 HOH A 140 640 291 HOH HOH . F 4 HOH A 141 641 115 HOH HOH . F 4 HOH A 142 642 106 HOH HOH . F 4 HOH A 143 643 266 HOH HOH . F 4 HOH A 144 644 93 HOH HOH . F 4 HOH A 145 645 225 HOH HOH . F 4 HOH A 146 646 84 HOH HOH . F 4 HOH A 147 647 247 HOH HOH . F 4 HOH A 148 648 191 HOH HOH . F 4 HOH A 149 649 92 HOH HOH . F 4 HOH A 150 650 56 HOH HOH . F 4 HOH A 151 651 172 HOH HOH . F 4 HOH A 152 652 78 HOH HOH . F 4 HOH A 153 653 98 HOH HOH . F 4 HOH A 154 654 32 HOH HOH . F 4 HOH A 155 655 254 HOH HOH . F 4 HOH A 156 656 230 HOH HOH . F 4 HOH A 157 657 48 HOH HOH . F 4 HOH A 158 658 44 HOH HOH . F 4 HOH A 159 659 8 HOH HOH . F 4 HOH A 160 660 2 HOH HOH . F 4 HOH A 161 661 283 HOH HOH . F 4 HOH A 162 662 80 HOH HOH . F 4 HOH A 163 663 216 HOH HOH . F 4 HOH A 164 664 109 HOH HOH . F 4 HOH A 165 665 163 HOH HOH . F 4 HOH A 166 666 201 HOH HOH . F 4 HOH A 167 667 18 HOH HOH . F 4 HOH A 168 668 45 HOH HOH . F 4 HOH A 169 669 54 HOH HOH . F 4 HOH A 170 670 89 HOH HOH . F 4 HOH A 171 671 290 HOH HOH . F 4 HOH A 172 672 72 HOH HOH . F 4 HOH A 173 673 227 HOH HOH . F 4 HOH A 174 674 125 HOH HOH . F 4 HOH A 175 675 51 HOH HOH . F 4 HOH A 176 676 253 HOH HOH . F 4 HOH A 177 677 130 HOH HOH . F 4 HOH A 178 678 257 HOH HOH . F 4 HOH A 179 679 154 HOH HOH . F 4 HOH A 180 680 13 HOH HOH . F 4 HOH A 181 681 214 HOH HOH . F 4 HOH A 182 682 242 HOH HOH . F 4 HOH A 183 683 259 HOH HOH . F 4 HOH A 184 684 134 HOH HOH . F 4 HOH A 185 685 243 HOH HOH . F 4 HOH A 186 686 23 HOH HOH . F 4 HOH A 187 687 116 HOH HOH . F 4 HOH A 188 688 111 HOH HOH . F 4 HOH A 189 689 260 HOH HOH . F 4 HOH A 190 690 202 HOH HOH . F 4 HOH A 191 691 217 HOH HOH . F 4 HOH A 192 692 270 HOH HOH . F 4 HOH A 193 693 206 HOH HOH . F 4 HOH A 194 694 105 HOH HOH . F 4 HOH A 195 695 114 HOH HOH . F 4 HOH A 196 696 173 HOH HOH . F 4 HOH A 197 697 158 HOH HOH . F 4 HOH A 198 698 183 HOH HOH . F 4 HOH A 199 699 237 HOH HOH . F 4 HOH A 200 700 22 HOH HOH . F 4 HOH A 201 701 181 HOH HOH . F 4 HOH A 202 702 174 HOH HOH . F 4 HOH A 203 703 166 HOH HOH . F 4 HOH A 204 704 244 HOH HOH . F 4 HOH A 205 705 221 HOH HOH . F 4 HOH A 206 706 194 HOH HOH . F 4 HOH A 207 707 132 HOH HOH . F 4 HOH A 208 708 196 HOH HOH . F 4 HOH A 209 709 251 HOH HOH . F 4 HOH A 210 710 273 HOH HOH . F 4 HOH A 211 711 209 HOH HOH . F 4 HOH A 212 712 167 HOH HOH . F 4 HOH A 213 713 47 HOH HOH . F 4 HOH A 214 714 184 HOH HOH . F 4 HOH A 215 715 131 HOH HOH . F 4 HOH A 216 716 223 HOH HOH . F 4 HOH A 217 717 187 HOH HOH . F 4 HOH A 218 718 189 HOH HOH . F 4 HOH A 219 719 258 HOH HOH . F 4 HOH A 220 720 128 HOH HOH . F 4 HOH A 221 721 176 HOH HOH . F 4 HOH A 222 722 153 HOH HOH . F 4 HOH A 223 723 284 HOH HOH . F 4 HOH A 224 724 213 HOH HOH . F 4 HOH A 225 725 71 HOH HOH . F 4 HOH A 226 726 220 HOH HOH . F 4 HOH A 227 727 188 HOH HOH . F 4 HOH A 228 728 224 HOH HOH . F 4 HOH A 229 729 246 HOH HOH . F 4 HOH A 230 730 277 HOH HOH . F 4 HOH A 231 731 103 HOH HOH . F 4 HOH A 232 732 255 HOH HOH . F 4 HOH A 233 733 113 HOH HOH . F 4 HOH A 234 734 192 HOH HOH . F 4 HOH A 235 735 139 HOH HOH . F 4 HOH A 236 736 87 HOH HOH . F 4 HOH A 237 737 245 HOH HOH . F 4 HOH A 238 738 182 HOH HOH . F 4 HOH A 239 739 288 HOH HOH . F 4 HOH A 240 740 296 HOH HOH . F 4 HOH A 241 741 186 HOH HOH . F 4 HOH A 242 742 294 HOH HOH . F 4 HOH A 243 743 46 HOH HOH . F 4 HOH A 244 744 121 HOH HOH . F 4 HOH A 245 745 67 HOH HOH . F 4 HOH A 246 746 295 HOH HOH . F 4 HOH A 247 747 38 HOH HOH . F 4 HOH A 248 748 168 HOH HOH . F 4 HOH A 249 749 95 HOH HOH . F 4 HOH A 250 750 248 HOH HOH . F 4 HOH A 251 751 293 HOH HOH . F 4 HOH A 252 752 297 HOH HOH . F 4 HOH A 253 753 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OKW . . . E 3 6.869 0.429 17.178 0.98 26.79 ? N1 OKW 404 A 1 HETATM 2 C C4 OKW . . . E 3 11.077 -0.829 22.454 0.98 29.36 ? C4 OKW 404 A 1 HETATM 3 C C5 OKW . . . E 3 9.598 -1.064 22.259 0.98 28.74 ? C5 OKW 404 A 1 HETATM 4 C C6 OKW . . . E 3 9.073 -0.241 21.1 0.98 28.37 ? C6 OKW 404 A 1 HETATM 5 C C7 OKW . . . E 3 7.246 -0.076 19.488 0.98 27.52 ? C7 OKW 404 A 1 HETATM 6 C C8 OKW . . . E 3 7.57 -0.177 18.139 0.98 26.94 ? C8 OKW 404 A 1 HETATM 7 C C10 OKW . . . E 3 5.395 1.331 18.851 0.98 27.1 ? C10 OKW 404 A 1 HETATM 8 C C13 OKW . . . E 3 5.624 1.055 21.216 0.98 27.18 ? C13 OKW 404 A 1 HETATM 9 C C15 OKW . . . E 3 11.997 -1.407 21.586 0.98 29.7 ? C15 OKW 404 A 1 HETATM 10 O O OKW . . . E 3 9.621 0.796 20.745 0.98 28.14 ? O OKW 404 A 1 HETATM 11 C C3 OKW . . . E 3 11.538 0.031 23.441 0.98 29.52 ? C3 OKW 404 A 1 HETATM 12 C C2 OKW . . . E 3 12.883 0.352 23.532 0.98 30.12 ? C2 OKW 404 A 1 HETATM 13 C C1 OKW . . . E 3 13.796 -0.206 22.65 0.98 30.36 ? C1 OKW 404 A 1 HETATM 14 C C OKW . . . E 3 13.338 -1.1 21.706 0.98 30.44 ? C OKW 404 A 1 HETATM 15 CL CL OKW . . . E 3 14.488 -1.933 20.695 0.98 31.73 ? CL OKW 404 A 1 HETATM 16 N N OKW . . . E 3 7.965 -0.729 20.513 0.98 27.98 ? N OKW 404 A 1 HETATM 17 C C14 OKW . . . E 3 6.139 0.705 19.847 0.98 27.31 ? C14 OKW 404 A 1 HETATM 18 C C12 OKW . . . E 3 4.277 1.726 20.934 0.98 27.15 ? C12 OKW 404 A 1 HETATM 19 C C11 OKW . . . E 3 4.266 2.126 19.455 0.98 27.32 ? C11 OKW 404 A 1 HETATM 20 C C9 OKW . . . E 3 5.806 1.152 17.548 0.98 26.65 ? C9 OKW 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #