data_7GFY # _model_server_result.job_id y7AExA0Xn3LvR-rgAsAsjg _model_server_result.datetime_utc '2024-11-21 09:06:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7GFY # _exptl.entry_id 7GFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.96 _cell.angle_gamma 90 _cell.entry_id 7GFY _cell.length_a 112.627 _cell.length_b 52.687 _cell.length_c 44.436 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C11 _struct_conn.ptnr2_label_comp_id OLX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id OLX _struct_conn.ptnr2_auth_seq_id 404 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.83 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GFY _atom_sites.fract_transf_matrix[1][1] 0.008879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OLX A 1 404 1101 OLX LIG . F 2 DMS A 1 405 1102 DMS DMS . G 2 DMS A 1 406 1103 DMS DMS . H 2 DMS A 1 407 1104 DMS DMS . I 2 DMS A 1 408 1105 DMS DMS . J 4 HOH A 1 501 154 HOH HOH . J 4 HOH A 2 502 252 HOH HOH . J 4 HOH A 3 503 94 HOH HOH . J 4 HOH A 4 504 73 HOH HOH . J 4 HOH A 5 505 39 HOH HOH . J 4 HOH A 6 506 96 HOH HOH . J 4 HOH A 7 507 60 HOH HOH . J 4 HOH A 8 508 199 HOH HOH . J 4 HOH A 9 509 50 HOH HOH . J 4 HOH A 10 510 63 HOH HOH . J 4 HOH A 11 511 283 HOH HOH . J 4 HOH A 12 512 51 HOH HOH . J 4 HOH A 13 513 35 HOH HOH . J 4 HOH A 14 514 284 HOH HOH . J 4 HOH A 15 515 100 HOH HOH . J 4 HOH A 16 516 90 HOH HOH . J 4 HOH A 17 517 309 HOH HOH . J 4 HOH A 18 518 1 HOH HOH . J 4 HOH A 19 519 215 HOH HOH . J 4 HOH A 20 520 116 HOH HOH . J 4 HOH A 21 521 70 HOH HOH . J 4 HOH A 22 522 29 HOH HOH . J 4 HOH A 23 523 149 HOH HOH . J 4 HOH A 24 524 41 HOH HOH . J 4 HOH A 25 525 170 HOH HOH . J 4 HOH A 26 526 84 HOH HOH . J 4 HOH A 27 527 3 HOH HOH . J 4 HOH A 28 528 142 HOH HOH . J 4 HOH A 29 529 79 HOH HOH . J 4 HOH A 30 530 74 HOH HOH . J 4 HOH A 31 531 109 HOH HOH . J 4 HOH A 32 532 138 HOH HOH . J 4 HOH A 33 533 9 HOH HOH . J 4 HOH A 34 534 148 HOH HOH . J 4 HOH A 35 535 310 HOH HOH . J 4 HOH A 36 536 236 HOH HOH . J 4 HOH A 37 537 110 HOH HOH . J 4 HOH A 38 538 307 HOH HOH . J 4 HOH A 39 539 147 HOH HOH . J 4 HOH A 40 540 119 HOH HOH . J 4 HOH A 41 541 298 HOH HOH . J 4 HOH A 42 542 136 HOH HOH . J 4 HOH A 43 543 210 HOH HOH . J 4 HOH A 44 544 102 HOH HOH . J 4 HOH A 45 545 21 HOH HOH . J 4 HOH A 46 546 263 HOH HOH . J 4 HOH A 47 547 151 HOH HOH . J 4 HOH A 48 548 65 HOH HOH . J 4 HOH A 49 549 203 HOH HOH . J 4 HOH A 50 550 37 HOH HOH . J 4 HOH A 51 551 64 HOH HOH . J 4 HOH A 52 552 286 HOH HOH . J 4 HOH A 53 553 304 HOH HOH . J 4 HOH A 54 554 198 HOH HOH . J 4 HOH A 55 555 24 HOH HOH . J 4 HOH A 56 556 204 HOH HOH . J 4 HOH A 57 557 253 HOH HOH . J 4 HOH A 58 558 308 HOH HOH . J 4 HOH A 59 559 301 HOH HOH . J 4 HOH A 60 560 34 HOH HOH . J 4 HOH A 61 561 66 HOH HOH . J 4 HOH A 62 562 99 HOH HOH . J 4 HOH A 63 563 146 HOH HOH . J 4 HOH A 64 564 312 HOH HOH . J 4 HOH A 65 565 5 HOH HOH . J 4 HOH A 66 566 83 HOH HOH . J 4 HOH A 67 567 30 HOH HOH . J 4 HOH A 68 568 20 HOH HOH . J 4 HOH A 69 569 42 HOH HOH . J 4 HOH A 70 570 256 HOH HOH . J 4 HOH A 71 571 280 HOH HOH . J 4 HOH A 72 572 302 HOH HOH . J 4 HOH A 73 573 156 HOH HOH . J 4 HOH A 74 574 59 HOH HOH . J 4 HOH A 75 575 124 HOH HOH . J 4 HOH A 76 576 303 HOH HOH . J 4 HOH A 77 577 150 HOH HOH . J 4 HOH A 78 578 106 HOH HOH . J 4 HOH A 79 579 12 HOH HOH . J 4 HOH A 80 580 36 HOH HOH . J 4 HOH A 81 581 52 HOH HOH . J 4 HOH A 82 582 164 HOH HOH . J 4 HOH A 83 583 118 HOH HOH . J 4 HOH A 84 584 45 HOH HOH . J 4 HOH A 85 585 19 HOH HOH . J 4 HOH A 86 586 10 HOH HOH . J 4 HOH A 87 587 127 HOH HOH . J 4 HOH A 88 588 152 HOH HOH . J 4 HOH A 89 589 53 HOH HOH . J 4 HOH A 90 590 14 HOH HOH . J 4 HOH A 91 591 6 HOH HOH . J 4 HOH A 92 592 294 HOH HOH . J 4 HOH A 93 593 129 HOH HOH . J 4 HOH A 94 594 31 HOH HOH . J 4 HOH A 95 595 27 HOH HOH . J 4 HOH A 96 596 268 HOH HOH . J 4 HOH A 97 597 4 HOH HOH . J 4 HOH A 98 598 155 HOH HOH . J 4 HOH A 99 599 89 HOH HOH . J 4 HOH A 100 600 161 HOH HOH . J 4 HOH A 101 601 108 HOH HOH . J 4 HOH A 102 602 62 HOH HOH . J 4 HOH A 103 603 76 HOH HOH . J 4 HOH A 104 604 143 HOH HOH . J 4 HOH A 105 605 190 HOH HOH . J 4 HOH A 106 606 86 HOH HOH . J 4 HOH A 107 607 55 HOH HOH . J 4 HOH A 108 608 200 HOH HOH . J 4 HOH A 109 609 292 HOH HOH . J 4 HOH A 110 610 188 HOH HOH . J 4 HOH A 111 611 61 HOH HOH . J 4 HOH A 112 612 57 HOH HOH . J 4 HOH A 113 613 26 HOH HOH . J 4 HOH A 114 614 40 HOH HOH . J 4 HOH A 115 615 135 HOH HOH . J 4 HOH A 116 616 15 HOH HOH . J 4 HOH A 117 617 232 HOH HOH . J 4 HOH A 118 618 33 HOH HOH . J 4 HOH A 119 619 120 HOH HOH . J 4 HOH A 120 620 239 HOH HOH . J 4 HOH A 121 621 77 HOH HOH . J 4 HOH A 122 622 49 HOH HOH . J 4 HOH A 123 623 91 HOH HOH . J 4 HOH A 124 624 11 HOH HOH . J 4 HOH A 125 625 80 HOH HOH . J 4 HOH A 126 626 107 HOH HOH . J 4 HOH A 127 627 81 HOH HOH . J 4 HOH A 128 628 249 HOH HOH . J 4 HOH A 129 629 7 HOH HOH . J 4 HOH A 130 630 228 HOH HOH . J 4 HOH A 131 631 214 HOH HOH . J 4 HOH A 132 632 201 HOH HOH . J 4 HOH A 133 633 169 HOH HOH . J 4 HOH A 134 634 212 HOH HOH . J 4 HOH A 135 635 195 HOH HOH . J 4 HOH A 136 636 264 HOH HOH . J 4 HOH A 137 637 28 HOH HOH . J 4 HOH A 138 638 202 HOH HOH . J 4 HOH A 139 639 295 HOH HOH . J 4 HOH A 140 640 69 HOH HOH . J 4 HOH A 141 641 183 HOH HOH . J 4 HOH A 142 642 173 HOH HOH . J 4 HOH A 143 643 17 HOH HOH . J 4 HOH A 144 644 56 HOH HOH . J 4 HOH A 145 645 137 HOH HOH . J 4 HOH A 146 646 229 HOH HOH . J 4 HOH A 147 647 85 HOH HOH . J 4 HOH A 148 648 97 HOH HOH . J 4 HOH A 149 649 172 HOH HOH . J 4 HOH A 150 650 269 HOH HOH . J 4 HOH A 151 651 68 HOH HOH . J 4 HOH A 152 652 72 HOH HOH . J 4 HOH A 153 653 93 HOH HOH . J 4 HOH A 154 654 2 HOH HOH . J 4 HOH A 155 655 181 HOH HOH . J 4 HOH A 156 656 171 HOH HOH . J 4 HOH A 157 657 197 HOH HOH . J 4 HOH A 158 658 267 HOH HOH . J 4 HOH A 159 659 43 HOH HOH . J 4 HOH A 160 660 117 HOH HOH . J 4 HOH A 161 661 92 HOH HOH . J 4 HOH A 162 662 23 HOH HOH . J 4 HOH A 163 663 78 HOH HOH . J 4 HOH A 164 664 13 HOH HOH . J 4 HOH A 165 665 98 HOH HOH . J 4 HOH A 166 666 54 HOH HOH . J 4 HOH A 167 667 270 HOH HOH . J 4 HOH A 168 668 144 HOH HOH . J 4 HOH A 169 669 305 HOH HOH . J 4 HOH A 170 670 166 HOH HOH . J 4 HOH A 171 671 160 HOH HOH . J 4 HOH A 172 672 191 HOH HOH . J 4 HOH A 173 673 123 HOH HOH . J 4 HOH A 174 674 18 HOH HOH . J 4 HOH A 175 675 213 HOH HOH . J 4 HOH A 176 676 58 HOH HOH . J 4 HOH A 177 677 274 HOH HOH . J 4 HOH A 178 678 134 HOH HOH . J 4 HOH A 179 679 32 HOH HOH . J 4 HOH A 180 680 193 HOH HOH . J 4 HOH A 181 681 132 HOH HOH . J 4 HOH A 182 682 133 HOH HOH . J 4 HOH A 183 683 8 HOH HOH . J 4 HOH A 184 684 242 HOH HOH . J 4 HOH A 185 685 115 HOH HOH . J 4 HOH A 186 686 290 HOH HOH . J 4 HOH A 187 687 44 HOH HOH . J 4 HOH A 188 688 22 HOH HOH . J 4 HOH A 189 689 266 HOH HOH . J 4 HOH A 190 690 163 HOH HOH . J 4 HOH A 191 691 167 HOH HOH . J 4 HOH A 192 692 48 HOH HOH . J 4 HOH A 193 693 254 HOH HOH . J 4 HOH A 194 694 128 HOH HOH . J 4 HOH A 195 695 75 HOH HOH . J 4 HOH A 196 696 159 HOH HOH . J 4 HOH A 197 697 192 HOH HOH . J 4 HOH A 198 698 112 HOH HOH . J 4 HOH A 199 699 313 HOH HOH . J 4 HOH A 200 700 260 HOH HOH . J 4 HOH A 201 701 221 HOH HOH . J 4 HOH A 202 702 231 HOH HOH . J 4 HOH A 203 703 104 HOH HOH . J 4 HOH A 204 704 297 HOH HOH . J 4 HOH A 205 705 219 HOH HOH . J 4 HOH A 206 706 130 HOH HOH . J 4 HOH A 207 707 275 HOH HOH . J 4 HOH A 208 708 145 HOH HOH . J 4 HOH A 209 709 257 HOH HOH . J 4 HOH A 210 710 306 HOH HOH . J 4 HOH A 211 711 105 HOH HOH . J 4 HOH A 212 712 114 HOH HOH . J 4 HOH A 213 713 125 HOH HOH . J 4 HOH A 214 714 16 HOH HOH . J 4 HOH A 215 715 300 HOH HOH . J 4 HOH A 216 716 177 HOH HOH . J 4 HOH A 217 717 211 HOH HOH . J 4 HOH A 218 718 237 HOH HOH . J 4 HOH A 219 719 243 HOH HOH . J 4 HOH A 220 720 217 HOH HOH . J 4 HOH A 221 721 88 HOH HOH . J 4 HOH A 222 722 206 HOH HOH . J 4 HOH A 223 723 255 HOH HOH . J 4 HOH A 224 724 273 HOH HOH . J 4 HOH A 225 725 47 HOH HOH . J 4 HOH A 226 726 187 HOH HOH . J 4 HOH A 227 727 247 HOH HOH . J 4 HOH A 228 728 224 HOH HOH . J 4 HOH A 229 729 139 HOH HOH . J 4 HOH A 230 730 234 HOH HOH . J 4 HOH A 231 731 189 HOH HOH . J 4 HOH A 232 732 209 HOH HOH . J 4 HOH A 233 733 293 HOH HOH . J 4 HOH A 234 734 103 HOH HOH . J 4 HOH A 235 735 244 HOH HOH . J 4 HOH A 236 736 184 HOH HOH . J 4 HOH A 237 737 111 HOH HOH . J 4 HOH A 238 738 180 HOH HOH . J 4 HOH A 239 739 230 HOH HOH . J 4 HOH A 240 740 272 HOH HOH . J 4 HOH A 241 741 71 HOH HOH . J 4 HOH A 242 742 299 HOH HOH . J 4 HOH A 243 743 178 HOH HOH . J 4 HOH A 244 744 158 HOH HOH . J 4 HOH A 245 745 287 HOH HOH . J 4 HOH A 246 746 131 HOH HOH . J 4 HOH A 247 747 281 HOH HOH . J 4 HOH A 248 748 186 HOH HOH . J 4 HOH A 249 749 153 HOH HOH . J 4 HOH A 250 750 251 HOH HOH . J 4 HOH A 251 751 296 HOH HOH . J 4 HOH A 252 752 165 HOH HOH . J 4 HOH A 253 753 246 HOH HOH . J 4 HOH A 254 754 227 HOH HOH . J 4 HOH A 255 755 291 HOH HOH . J 4 HOH A 256 756 258 HOH HOH . J 4 HOH A 257 757 182 HOH HOH . J 4 HOH A 258 758 174 HOH HOH . J 4 HOH A 259 759 87 HOH HOH . J 4 HOH A 260 760 113 HOH HOH . J 4 HOH A 261 761 223 HOH HOH . J 4 HOH A 262 762 140 HOH HOH . J 4 HOH A 263 763 67 HOH HOH . J 4 HOH A 264 764 176 HOH HOH . J 4 HOH A 265 765 38 HOH HOH . J 4 HOH A 266 766 288 HOH HOH . J 4 HOH A 267 767 46 HOH HOH . J 4 HOH A 268 768 121 HOH HOH . J 4 HOH A 269 769 276 HOH HOH . J 4 HOH A 270 770 250 HOH HOH . J 4 HOH A 271 771 240 HOH HOH . J 4 HOH A 272 772 289 HOH HOH . J 4 HOH A 273 773 278 HOH HOH . J 4 HOH A 274 774 220 HOH HOH . J 4 HOH A 275 775 248 HOH HOH . J 4 HOH A 276 776 95 HOH HOH . J 4 HOH A 277 777 311 HOH HOH . J 4 HOH A 278 778 282 HOH HOH . J 4 HOH A 279 779 279 HOH HOH . J 4 HOH A 280 780 168 HOH HOH . J 4 HOH A 281 781 238 HOH HOH . J 4 HOH A 282 782 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 2 21.404 14.724 8.05 1 46.46 ? S DMS 405 A 1 HETATM 2 O O DMS . . . F 2 22.815 14.355 7.913 1 46.57 ? O DMS 405 A 1 HETATM 3 C C1 DMS . . . F 2 20.603 13.75 6.805 1 46.28 ? C1 DMS 405 A 1 HETATM 4 C C2 DMS . . . F 2 21.352 16.29 7.223 1 46.78 ? C2 DMS 405 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 681 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #