data_7GG5 # _model_server_result.job_id pIquieYenfF02lmPvwtHeA _model_server_result.datetime_utc '2024-11-21 09:04:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GG5 # _exptl.entry_id 7GG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.98 _cell.angle_gamma 90 _cell.entry_id 7GG5 _cell.length_a 112.461 _cell.length_b 52.721 _cell.length_c 44.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GG5 _atom_sites.fract_transf_matrix[1][1] 0.008892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OQF A 1 404 1101 OQF LIG . F 4 HOH A 1 501 233 HOH HOH . F 4 HOH A 2 502 63 HOH HOH . F 4 HOH A 3 503 25 HOH HOH . F 4 HOH A 4 504 263 HOH HOH . F 4 HOH A 5 505 261 HOH HOH . F 4 HOH A 6 506 199 HOH HOH . F 4 HOH A 7 507 106 HOH HOH . F 4 HOH A 8 508 252 HOH HOH . F 4 HOH A 9 509 286 HOH HOH . F 4 HOH A 10 510 94 HOH HOH . F 4 HOH A 11 511 135 HOH HOH . F 4 HOH A 12 512 119 HOH HOH . F 4 HOH A 13 513 245 HOH HOH . F 4 HOH A 14 514 142 HOH HOH . F 4 HOH A 15 515 73 HOH HOH . F 4 HOH A 16 516 29 HOH HOH . F 4 HOH A 17 517 1 HOH HOH . F 4 HOH A 18 518 35 HOH HOH . F 4 HOH A 19 519 100 HOH HOH . F 4 HOH A 20 520 34 HOH HOH . F 4 HOH A 21 521 90 HOH HOH . F 4 HOH A 22 522 101 HOH HOH . F 4 HOH A 23 523 291 HOH HOH . F 4 HOH A 24 524 96 HOH HOH . F 4 HOH A 25 525 292 HOH HOH . F 4 HOH A 26 526 84 HOH HOH . F 4 HOH A 27 527 53 HOH HOH . F 4 HOH A 28 528 265 HOH HOH . F 4 HOH A 29 529 288 HOH HOH . F 4 HOH A 30 530 297 HOH HOH . F 4 HOH A 31 531 9 HOH HOH . F 4 HOH A 32 532 41 HOH HOH . F 4 HOH A 33 533 70 HOH HOH . F 4 HOH A 34 534 74 HOH HOH . F 4 HOH A 35 535 299 HOH HOH . F 4 HOH A 36 536 79 HOH HOH . F 4 HOH A 37 537 82 HOH HOH . F 4 HOH A 38 538 60 HOH HOH . F 4 HOH A 39 539 138 HOH HOH . F 4 HOH A 40 540 136 HOH HOH . F 4 HOH A 41 541 21 HOH HOH . F 4 HOH A 42 542 149 HOH HOH . F 4 HOH A 43 543 102 HOH HOH . F 4 HOH A 44 544 52 HOH HOH . F 4 HOH A 45 545 236 HOH HOH . F 4 HOH A 46 546 39 HOH HOH . F 4 HOH A 47 547 215 HOH HOH . F 4 HOH A 48 548 30 HOH HOH . F 4 HOH A 49 549 154 HOH HOH . F 4 HOH A 50 550 37 HOH HOH . F 4 HOH A 51 551 284 HOH HOH . F 4 HOH A 52 552 12 HOH HOH . F 4 HOH A 53 553 42 HOH HOH . F 4 HOH A 54 554 210 HOH HOH . F 4 HOH A 55 555 170 HOH HOH . F 4 HOH A 56 556 3 HOH HOH . F 4 HOH A 57 557 24 HOH HOH . F 4 HOH A 58 558 146 HOH HOH . F 4 HOH A 59 559 203 HOH HOH . F 4 HOH A 60 560 247 HOH HOH . F 4 HOH A 61 561 20 HOH HOH . F 4 HOH A 62 562 204 HOH HOH . F 4 HOH A 63 563 127 HOH HOH . F 4 HOH A 64 564 65 HOH HOH . F 4 HOH A 65 565 10 HOH HOH . F 4 HOH A 66 566 83 HOH HOH . F 4 HOH A 67 567 45 HOH HOH . F 4 HOH A 68 568 290 HOH HOH . F 4 HOH A 69 569 151 HOH HOH . F 4 HOH A 70 570 50 HOH HOH . F 4 HOH A 71 571 110 HOH HOH . F 4 HOH A 72 572 198 HOH HOH . F 4 HOH A 73 573 107 HOH HOH . F 4 HOH A 74 574 152 HOH HOH . F 4 HOH A 75 575 99 HOH HOH . F 4 HOH A 76 576 155 HOH HOH . F 4 HOH A 77 577 77 HOH HOH . F 4 HOH A 78 578 304 HOH HOH . F 4 HOH A 79 579 156 HOH HOH . F 4 HOH A 80 580 51 HOH HOH . F 4 HOH A 81 581 280 HOH HOH . F 4 HOH A 82 582 256 HOH HOH . F 4 HOH A 83 583 66 HOH HOH . F 4 HOH A 84 584 62 HOH HOH . F 4 HOH A 85 585 27 HOH HOH . F 4 HOH A 86 586 175 HOH HOH . F 4 HOH A 87 587 5 HOH HOH . F 4 HOH A 88 588 36 HOH HOH . F 4 HOH A 89 589 270 HOH HOH . F 4 HOH A 90 590 207 HOH HOH . F 4 HOH A 91 591 232 HOH HOH . F 4 HOH A 92 592 108 HOH HOH . F 4 HOH A 93 593 4 HOH HOH . F 4 HOH A 94 594 89 HOH HOH . F 4 HOH A 95 595 6 HOH HOH . F 4 HOH A 96 596 86 HOH HOH . F 4 HOH A 97 597 69 HOH HOH . F 4 HOH A 98 598 143 HOH HOH . F 4 HOH A 99 599 159 HOH HOH . F 4 HOH A 100 600 129 HOH HOH . F 4 HOH A 101 601 33 HOH HOH . F 4 HOH A 102 602 200 HOH HOH . F 4 HOH A 103 603 124 HOH HOH . F 4 HOH A 104 604 117 HOH HOH . F 4 HOH A 105 605 19 HOH HOH . F 4 HOH A 106 606 15 HOH HOH . F 4 HOH A 107 607 161 HOH HOH . F 4 HOH A 108 608 7 HOH HOH . F 4 HOH A 109 609 26 HOH HOH . F 4 HOH A 110 610 55 HOH HOH . F 4 HOH A 111 611 116 HOH HOH . F 4 HOH A 112 612 76 HOH HOH . F 4 HOH A 113 613 173 HOH HOH . F 4 HOH A 114 614 188 HOH HOH . F 4 HOH A 115 615 40 HOH HOH . F 4 HOH A 116 616 249 HOH HOH . F 4 HOH A 117 617 157 HOH HOH . F 4 HOH A 118 618 61 HOH HOH . F 4 HOH A 119 619 98 HOH HOH . F 4 HOH A 120 620 148 HOH HOH . F 4 HOH A 121 621 31 HOH HOH . F 4 HOH A 122 622 218 HOH HOH . F 4 HOH A 123 623 266 HOH HOH . F 4 HOH A 124 624 228 HOH HOH . F 4 HOH A 125 625 80 HOH HOH . F 4 HOH A 126 626 11 HOH HOH . F 4 HOH A 127 627 68 HOH HOH . F 4 HOH A 128 628 120 HOH HOH . F 4 HOH A 129 629 279 HOH HOH . F 4 HOH A 130 630 59 HOH HOH . F 4 HOH A 131 631 91 HOH HOH . F 4 HOH A 132 632 267 HOH HOH . F 4 HOH A 133 633 147 HOH HOH . F 4 HOH A 134 634 57 HOH HOH . F 4 HOH A 135 635 202 HOH HOH . F 4 HOH A 136 636 195 HOH HOH . F 4 HOH A 137 637 272 HOH HOH . F 4 HOH A 138 638 17 HOH HOH . F 4 HOH A 139 639 56 HOH HOH . F 4 HOH A 140 640 28 HOH HOH . F 4 HOH A 141 641 111 HOH HOH . F 4 HOH A 142 642 14 HOH HOH . F 4 HOH A 143 643 81 HOH HOH . F 4 HOH A 144 644 132 HOH HOH . F 4 HOH A 145 645 2 HOH HOH . F 4 HOH A 146 646 123 HOH HOH . F 4 HOH A 147 647 49 HOH HOH . F 4 HOH A 148 648 294 HOH HOH . F 4 HOH A 149 649 289 HOH HOH . F 4 HOH A 150 650 172 HOH HOH . F 4 HOH A 151 651 8 HOH HOH . F 4 HOH A 152 652 93 HOH HOH . F 4 HOH A 153 653 254 HOH HOH . F 4 HOH A 154 654 197 HOH HOH . F 4 HOH A 155 655 268 HOH HOH . F 4 HOH A 156 656 13 HOH HOH . F 4 HOH A 157 657 214 HOH HOH . F 4 HOH A 158 658 58 HOH HOH . F 4 HOH A 159 659 230 HOH HOH . F 4 HOH A 160 660 109 HOH HOH . F 4 HOH A 161 661 201 HOH HOH . F 4 HOH A 162 662 212 HOH HOH . F 4 HOH A 163 663 253 HOH HOH . F 4 HOH A 164 664 274 HOH HOH . F 4 HOH A 165 665 64 HOH HOH . F 4 HOH A 166 666 92 HOH HOH . F 4 HOH A 167 667 137 HOH HOH . F 4 HOH A 168 668 184 HOH HOH . F 4 HOH A 169 669 144 HOH HOH . F 4 HOH A 170 670 163 HOH HOH . F 4 HOH A 171 671 162 HOH HOH . F 4 HOH A 172 672 191 HOH HOH . F 4 HOH A 173 673 18 HOH HOH . F 4 HOH A 174 674 193 HOH HOH . F 4 HOH A 175 675 241 HOH HOH . F 4 HOH A 176 676 97 HOH HOH . F 4 HOH A 177 677 78 HOH HOH . F 4 HOH A 178 678 72 HOH HOH . F 4 HOH A 179 679 115 HOH HOH . F 4 HOH A 180 680 160 HOH HOH . F 4 HOH A 181 681 216 HOH HOH . F 4 HOH A 182 682 23 HOH HOH . F 4 HOH A 183 683 179 HOH HOH . F 4 HOH A 184 684 171 HOH HOH . F 4 HOH A 185 685 54 HOH HOH . F 4 HOH A 186 686 134 HOH HOH . F 4 HOH A 187 687 133 HOH HOH . F 4 HOH A 188 688 239 HOH HOH . F 4 HOH A 189 689 169 HOH HOH . F 4 HOH A 190 690 104 HOH HOH . F 4 HOH A 191 691 190 HOH HOH . F 4 HOH A 192 692 166 HOH HOH . F 4 HOH A 193 693 301 HOH HOH . F 4 HOH A 194 694 285 HOH HOH . F 4 HOH A 195 695 44 HOH HOH . F 4 HOH A 196 696 85 HOH HOH . F 4 HOH A 197 697 283 HOH HOH . F 4 HOH A 198 698 181 HOH HOH . F 4 HOH A 199 699 211 HOH HOH . F 4 HOH A 200 700 183 HOH HOH . F 4 HOH A 201 701 32 HOH HOH . F 4 HOH A 202 702 22 HOH HOH . F 4 HOH A 203 703 269 HOH HOH . F 4 HOH A 204 704 229 HOH HOH . F 4 HOH A 205 705 177 HOH HOH . F 4 HOH A 206 706 231 HOH HOH . F 4 HOH A 207 707 257 HOH HOH . F 4 HOH A 208 708 48 HOH HOH . F 4 HOH A 209 709 16 HOH HOH . F 4 HOH A 210 710 260 HOH HOH . F 4 HOH A 211 711 275 HOH HOH . F 4 HOH A 212 712 112 HOH HOH . F 4 HOH A 213 713 130 HOH HOH . F 4 HOH A 214 714 141 HOH HOH . F 4 HOH A 215 715 225 HOH HOH . F 4 HOH A 216 716 167 HOH HOH . F 4 HOH A 217 717 206 HOH HOH . F 4 HOH A 218 718 43 HOH HOH . F 4 HOH A 219 719 213 HOH HOH . F 4 HOH A 220 720 75 HOH HOH . F 4 HOH A 221 721 217 HOH HOH . F 4 HOH A 222 722 125 HOH HOH . F 4 HOH A 223 723 122 HOH HOH . F 4 HOH A 224 724 47 HOH HOH . F 4 HOH A 225 725 224 HOH HOH . F 4 HOH A 226 726 105 HOH HOH . F 4 HOH A 227 727 192 HOH HOH . F 4 HOH A 228 728 243 HOH HOH . F 4 HOH A 229 729 145 HOH HOH . F 4 HOH A 230 730 259 HOH HOH . F 4 HOH A 231 731 219 HOH HOH . F 4 HOH A 232 732 114 HOH HOH . F 4 HOH A 233 733 88 HOH HOH . F 4 HOH A 234 734 221 HOH HOH . F 4 HOH A 235 735 300 HOH HOH . F 4 HOH A 236 736 196 HOH HOH . F 4 HOH A 237 737 264 HOH HOH . F 4 HOH A 238 738 237 HOH HOH . F 4 HOH A 239 739 244 HOH HOH . F 4 HOH A 240 740 174 HOH HOH . F 4 HOH A 241 741 180 HOH HOH . F 4 HOH A 242 742 281 HOH HOH . F 4 HOH A 243 743 139 HOH HOH . F 4 HOH A 244 744 282 HOH HOH . F 4 HOH A 245 745 209 HOH HOH . F 4 HOH A 246 746 273 HOH HOH . F 4 HOH A 247 747 131 HOH HOH . F 4 HOH A 248 748 298 HOH HOH . F 4 HOH A 249 749 227 HOH HOH . F 4 HOH A 250 750 187 HOH HOH . F 4 HOH A 251 751 305 HOH HOH . F 4 HOH A 252 752 153 HOH HOH . F 4 HOH A 253 753 165 HOH HOH . F 4 HOH A 254 754 189 HOH HOH . F 4 HOH A 255 755 71 HOH HOH . F 4 HOH A 256 756 178 HOH HOH . F 4 HOH A 257 757 103 HOH HOH . F 4 HOH A 258 758 158 HOH HOH . F 4 HOH A 259 759 303 HOH HOH . F 4 HOH A 260 760 251 HOH HOH . F 4 HOH A 261 761 182 HOH HOH . F 4 HOH A 262 762 186 HOH HOH . F 4 HOH A 263 763 87 HOH HOH . F 4 HOH A 264 764 246 HOH HOH . F 4 HOH A 265 765 223 HOH HOH . F 4 HOH A 266 766 295 HOH HOH . F 4 HOH A 267 767 258 HOH HOH . F 4 HOH A 268 768 302 HOH HOH . F 4 HOH A 269 769 293 HOH HOH . F 4 HOH A 270 770 140 HOH HOH . F 4 HOH A 271 771 113 HOH HOH . F 4 HOH A 272 772 46 HOH HOH . F 4 HOH A 273 773 67 HOH HOH . F 4 HOH A 274 774 38 HOH HOH . F 4 HOH A 275 775 121 HOH HOH . F 4 HOH A 276 776 126 HOH HOH . F 4 HOH A 277 777 128 HOH HOH . F 4 HOH A 278 778 278 HOH HOH . F 4 HOH A 279 779 95 HOH HOH . F 4 HOH A 280 780 220 HOH HOH . F 4 HOH A 281 781 248 HOH HOH . F 4 HOH A 282 782 276 HOH HOH . F 4 HOH A 283 783 250 HOH HOH . F 4 HOH A 284 784 168 HOH HOH . F 4 HOH A 285 785 240 HOH HOH . F 4 HOH A 286 786 277 HOH HOH . F 4 HOH A 287 787 287 HOH HOH . F 4 HOH A 288 788 296 HOH HOH . F 4 HOH A 289 789 238 HOH HOH . F 4 HOH A 290 790 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 6.153 -0.979 -6.299 1 31.34 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 2 6.977 -0.547 -7.429 1 32.31 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 2 7.273 -0.971 -4.931 1 31.65 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 2 5.944 -2.713 -6.487 1 31.05 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #