data_7GGC # _model_server_result.job_id tiqiljdMo5J2yTHeoWcVpA _model_server_result.datetime_utc '2025-01-28 04:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7GGC # _exptl.entry_id 7GGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.64 _cell.angle_gamma 90 _cell.entry_id 7GGC _cell.length_a 112.4 _cell.length_b 53.309 _cell.length_c 46.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GGC _atom_sites.fract_transf_matrix[1][1] 0.008897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OTV A 1 404 1005 OTV LIG . F 4 HOH A 1 501 261 HOH HOH . F 4 HOH A 2 502 34 HOH HOH . F 4 HOH A 3 503 9 HOH HOH . F 4 HOH A 4 504 33 HOH HOH . F 4 HOH A 5 505 70 HOH HOH . F 4 HOH A 6 506 92 HOH HOH . F 4 HOH A 7 507 50 HOH HOH . F 4 HOH A 8 508 29 HOH HOH . F 4 HOH A 9 509 214 HOH HOH . F 4 HOH A 10 510 27 HOH HOH . F 4 HOH A 11 511 196 HOH HOH . F 4 HOH A 12 512 149 HOH HOH . F 4 HOH A 13 513 252 HOH HOH . F 4 HOH A 14 514 4 HOH HOH . F 4 HOH A 15 515 74 HOH HOH . F 4 HOH A 16 516 11 HOH HOH . F 4 HOH A 17 517 179 HOH HOH . F 4 HOH A 18 518 24 HOH HOH . F 4 HOH A 19 519 12 HOH HOH . F 4 HOH A 20 520 76 HOH HOH . F 4 HOH A 21 521 173 HOH HOH . F 4 HOH A 22 522 259 HOH HOH . F 4 HOH A 23 523 107 HOH HOH . F 4 HOH A 24 524 64 HOH HOH . F 4 HOH A 25 525 20 HOH HOH . F 4 HOH A 26 526 66 HOH HOH . F 4 HOH A 27 527 101 HOH HOH . F 4 HOH A 28 528 156 HOH HOH . F 4 HOH A 29 529 83 HOH HOH . F 4 HOH A 30 530 59 HOH HOH . F 4 HOH A 31 531 274 HOH HOH . F 4 HOH A 32 532 154 HOH HOH . F 4 HOH A 33 533 52 HOH HOH . F 4 HOH A 34 534 124 HOH HOH . F 4 HOH A 35 535 21 HOH HOH . F 4 HOH A 36 536 6 HOH HOH . F 4 HOH A 37 537 115 HOH HOH . F 4 HOH A 38 538 143 HOH HOH . F 4 HOH A 39 539 265 HOH HOH . F 4 HOH A 40 540 91 HOH HOH . F 4 HOH A 41 541 14 HOH HOH . F 4 HOH A 42 542 219 HOH HOH . F 4 HOH A 43 543 28 HOH HOH . F 4 HOH A 44 544 127 HOH HOH . F 4 HOH A 45 545 230 HOH HOH . F 4 HOH A 46 546 198 HOH HOH . F 4 HOH A 47 547 18 HOH HOH . F 4 HOH A 48 548 109 HOH HOH . F 4 HOH A 49 549 68 HOH HOH . F 4 HOH A 50 550 275 HOH HOH . F 4 HOH A 51 551 163 HOH HOH . F 4 HOH A 52 552 229 HOH HOH . F 4 HOH A 53 553 36 HOH HOH . F 4 HOH A 54 554 108 HOH HOH . F 4 HOH A 55 555 22 HOH HOH . F 4 HOH A 56 556 277 HOH HOH . F 4 HOH A 57 557 15 HOH HOH . F 4 HOH A 58 558 3 HOH HOH . F 4 HOH A 59 559 138 HOH HOH . F 4 HOH A 60 560 44 HOH HOH . F 4 HOH A 61 561 207 HOH HOH . F 4 HOH A 62 562 218 HOH HOH . F 4 HOH A 63 563 69 HOH HOH . F 4 HOH A 64 564 82 HOH HOH . F 4 HOH A 65 565 216 HOH HOH . F 4 HOH A 66 566 134 HOH HOH . F 4 HOH A 67 567 122 HOH HOH . F 4 HOH A 68 568 56 HOH HOH . F 4 HOH A 69 569 98 HOH HOH . F 4 HOH A 70 570 7 HOH HOH . F 4 HOH A 71 571 267 HOH HOH . F 4 HOH A 72 572 144 HOH HOH . F 4 HOH A 73 573 26 HOH HOH . F 4 HOH A 74 574 193 HOH HOH . F 4 HOH A 75 575 60 HOH HOH . F 4 HOH A 76 576 191 HOH HOH . F 4 HOH A 77 577 2 HOH HOH . F 4 HOH A 78 578 97 HOH HOH . F 4 HOH A 79 579 110 HOH HOH . F 4 HOH A 80 580 8 HOH HOH . F 4 HOH A 81 581 232 HOH HOH . F 4 HOH A 82 582 54 HOH HOH . F 4 HOH A 83 583 17 HOH HOH . F 4 HOH A 84 584 80 HOH HOH . F 4 HOH A 85 585 184 HOH HOH . F 4 HOH A 86 586 43 HOH HOH . F 4 HOH A 87 587 204 HOH HOH . F 4 HOH A 88 588 86 HOH HOH . F 4 HOH A 89 589 19 HOH HOH . F 4 HOH A 90 590 195 HOH HOH . F 4 HOH A 91 591 256 HOH HOH . F 4 HOH A 92 592 243 HOH HOH . F 4 HOH A 93 593 235 HOH HOH . F 4 HOH A 94 594 5 HOH HOH . F 4 HOH A 95 595 85 HOH HOH . F 4 HOH A 96 596 78 HOH HOH . F 4 HOH A 97 597 142 HOH HOH . F 4 HOH A 98 598 221 HOH HOH . F 4 HOH A 99 599 114 HOH HOH . F 4 HOH A 100 600 181 HOH HOH . F 4 HOH A 101 601 118 HOH HOH . F 4 HOH A 102 602 16 HOH HOH . F 4 HOH A 103 603 211 HOH HOH . F 4 HOH A 104 604 125 HOH HOH . F 4 HOH A 105 605 55 HOH HOH . F 4 HOH A 106 606 162 HOH HOH . F 4 HOH A 107 607 30 HOH HOH . F 4 HOH A 108 608 129 HOH HOH . F 4 HOH A 109 609 169 HOH HOH . F 4 HOH A 110 610 112 HOH HOH . F 4 HOH A 111 611 258 HOH HOH . F 4 HOH A 112 612 73 HOH HOH . F 4 HOH A 113 613 77 HOH HOH . F 4 HOH A 114 614 141 HOH HOH . F 4 HOH A 115 615 272 HOH HOH . F 4 HOH A 116 616 32 HOH HOH . F 4 HOH A 117 617 75 HOH HOH . F 4 HOH A 118 618 260 HOH HOH . F 4 HOH A 119 619 160 HOH HOH . F 4 HOH A 120 620 266 HOH HOH . F 4 HOH A 121 621 166 HOH HOH . F 4 HOH A 122 622 150 HOH HOH . F 4 HOH A 123 623 151 HOH HOH . F 4 HOH A 124 624 241 HOH HOH . F 4 HOH A 125 625 254 HOH HOH . F 4 HOH A 126 626 135 HOH HOH . F 4 HOH A 127 627 41 HOH HOH . F 4 HOH A 128 628 116 HOH HOH . F 4 HOH A 129 629 45 HOH HOH . F 4 HOH A 130 630 57 HOH HOH . F 4 HOH A 131 631 239 HOH HOH . F 4 HOH A 132 632 131 HOH HOH . F 4 HOH A 133 633 71 HOH HOH . F 4 HOH A 134 634 237 HOH HOH . F 4 HOH A 135 635 246 HOH HOH . F 4 HOH A 136 636 47 HOH HOH . F 4 HOH A 137 637 231 HOH HOH . F 4 HOH A 138 638 121 HOH HOH . F 4 HOH A 139 639 215 HOH HOH . F 4 HOH A 140 640 46 HOH HOH . F 4 HOH A 141 641 119 HOH HOH . F 4 HOH A 142 642 276 HOH HOH . F 4 HOH A 143 643 132 HOH HOH . F 4 HOH A 144 644 106 HOH HOH . F 4 HOH A 145 645 217 HOH HOH . F 4 HOH A 146 646 242 HOH HOH . F 4 HOH A 147 647 140 HOH HOH . F 4 HOH A 148 648 51 HOH HOH . F 4 HOH A 149 649 245 HOH HOH . F 4 HOH A 150 650 148 HOH HOH . F 4 HOH A 151 651 251 HOH HOH . F 4 HOH A 152 652 178 HOH HOH . F 4 HOH A 153 653 88 HOH HOH . F 4 HOH A 154 654 103 HOH HOH . F 4 HOH A 155 655 38 HOH HOH . F 4 HOH A 156 656 165 HOH HOH . F 4 HOH A 157 657 182 HOH HOH . F 4 HOH A 158 658 105 HOH HOH . F 4 HOH A 159 659 139 HOH HOH . F 4 HOH A 160 660 278 HOH HOH . F 4 HOH A 161 661 158 HOH HOH . F 4 HOH A 162 662 87 HOH HOH . F 4 HOH A 163 663 113 HOH HOH . F 4 HOH A 164 664 224 HOH HOH . F 4 HOH A 165 665 238 HOH HOH . F 4 HOH A 166 666 223 HOH HOH . F 4 HOH A 167 667 186 HOH HOH . F 4 HOH A 168 668 220 HOH HOH . F 4 HOH A 169 669 128 HOH HOH . F 4 HOH A 170 670 65 HOH HOH . F 4 HOH A 171 671 153 HOH HOH . F 4 HOH A 172 672 67 HOH HOH . F 4 HOH A 173 673 126 HOH HOH . F 4 HOH A 174 674 95 HOH HOH . F 4 HOH A 175 675 222 HOH HOH . F 4 HOH A 176 676 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 2.059 -19.139 8.295 1 78.29 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 2 3.139 -18.934 9.272 1 77.91 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 2 0.839 -17.925 8.69 1 78.39 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 2 1.191 -20.579 8.864 1 78.57 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #