data_7GGC # _model_server_result.job_id 4du0cELvaAowyOV7RtApNQ _model_server_result.datetime_utc '2024-11-21 08:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GGC # _exptl.entry_id 7GGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.795 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3-chloro-5-{[(1S,2R)-2-(trifluoromethyl)cyclopropyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.64 _cell.angle_gamma 90 _cell.entry_id 7GGC _cell.length_a 112.4 _cell.length_b 53.309 _cell.length_c 46.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 Cl F3 N3 O' _chem_comp.formula_weight 383.795 _chem_comp.id OTV _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3-chloro-5-{[(1S,2R)-2-(trifluoromethyl)cyclopropyl]amino}phenyl)-N-(4-methylpyridin-3-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C3 OTV doub 246 n y N C4 OTV sing 247 n y C3 C2 OTV sing 248 n y C4 C5 OTV doub 249 n y C2 C1 OTV doub 250 n y C5 C1 OTV sing 251 n y C5 N1 OTV sing 252 n n C1 C OTV sing 253 n n N1 C6 OTV sing 254 n n O C6 OTV doub 255 n n C6 C7 OTV sing 256 n n C7 C8 OTV sing 257 n n C9 C8 OTV doub 258 n y C9 C10 OTV sing 259 n y C8 C17 OTV sing 260 n y CL C10 OTV sing 261 n n C10 C11 OTV doub 262 n y C17 C12 OTV doub 263 n y F1 C16 OTV sing 264 n n C11 C12 OTV sing 265 n y F2 C16 OTV sing 266 n n C12 N2 OTV sing 267 n n C16 F OTV sing 268 n n C16 C15 OTV sing 269 n n N2 C13 OTV sing 270 n n C15 C13 OTV sing 271 n n C15 C14 OTV sing 272 n n C13 C14 OTV sing 273 n n N1 H1 OTV sing 274 n n C4 H2 OTV sing 275 n n C7 H3 OTV sing 276 n n C7 H4 OTV sing 277 n n C13 H5 OTV sing 278 n n C15 H6 OTV sing 279 n n C17 H7 OTV sing 280 n n C14 H8 OTV sing 281 n n C14 H9 OTV sing 282 n n N2 H10 OTV sing 283 n n C11 H11 OTV sing 284 n n C9 H12 OTV sing 285 n n C H13 OTV sing 286 n n C H14 OTV sing 287 n n C H15 OTV sing 288 n n C3 H16 OTV sing 289 n n C2 H17 OTV sing 290 n n # _atom_sites.entry_id 7GGC _atom_sites.fract_transf_matrix[1][1] 0.008897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OTV A 1 404 1005 OTV LIG . F 4 HOH A 1 501 261 HOH HOH . F 4 HOH A 2 502 34 HOH HOH . F 4 HOH A 3 503 9 HOH HOH . F 4 HOH A 4 504 33 HOH HOH . F 4 HOH A 5 505 70 HOH HOH . F 4 HOH A 6 506 92 HOH HOH . F 4 HOH A 7 507 50 HOH HOH . F 4 HOH A 8 508 29 HOH HOH . F 4 HOH A 9 509 214 HOH HOH . F 4 HOH A 10 510 27 HOH HOH . F 4 HOH A 11 511 196 HOH HOH . F 4 HOH A 12 512 149 HOH HOH . F 4 HOH A 13 513 252 HOH HOH . F 4 HOH A 14 514 4 HOH HOH . F 4 HOH A 15 515 74 HOH HOH . F 4 HOH A 16 516 11 HOH HOH . F 4 HOH A 17 517 179 HOH HOH . F 4 HOH A 18 518 24 HOH HOH . F 4 HOH A 19 519 12 HOH HOH . F 4 HOH A 20 520 76 HOH HOH . F 4 HOH A 21 521 173 HOH HOH . F 4 HOH A 22 522 259 HOH HOH . F 4 HOH A 23 523 107 HOH HOH . F 4 HOH A 24 524 64 HOH HOH . F 4 HOH A 25 525 20 HOH HOH . F 4 HOH A 26 526 66 HOH HOH . F 4 HOH A 27 527 101 HOH HOH . F 4 HOH A 28 528 156 HOH HOH . F 4 HOH A 29 529 83 HOH HOH . F 4 HOH A 30 530 59 HOH HOH . F 4 HOH A 31 531 274 HOH HOH . F 4 HOH A 32 532 154 HOH HOH . F 4 HOH A 33 533 52 HOH HOH . F 4 HOH A 34 534 124 HOH HOH . F 4 HOH A 35 535 21 HOH HOH . F 4 HOH A 36 536 6 HOH HOH . F 4 HOH A 37 537 115 HOH HOH . F 4 HOH A 38 538 143 HOH HOH . F 4 HOH A 39 539 265 HOH HOH . F 4 HOH A 40 540 91 HOH HOH . F 4 HOH A 41 541 14 HOH HOH . F 4 HOH A 42 542 219 HOH HOH . F 4 HOH A 43 543 28 HOH HOH . F 4 HOH A 44 544 127 HOH HOH . F 4 HOH A 45 545 230 HOH HOH . F 4 HOH A 46 546 198 HOH HOH . F 4 HOH A 47 547 18 HOH HOH . F 4 HOH A 48 548 109 HOH HOH . F 4 HOH A 49 549 68 HOH HOH . F 4 HOH A 50 550 275 HOH HOH . F 4 HOH A 51 551 163 HOH HOH . F 4 HOH A 52 552 229 HOH HOH . F 4 HOH A 53 553 36 HOH HOH . F 4 HOH A 54 554 108 HOH HOH . F 4 HOH A 55 555 22 HOH HOH . F 4 HOH A 56 556 277 HOH HOH . F 4 HOH A 57 557 15 HOH HOH . F 4 HOH A 58 558 3 HOH HOH . F 4 HOH A 59 559 138 HOH HOH . F 4 HOH A 60 560 44 HOH HOH . F 4 HOH A 61 561 207 HOH HOH . F 4 HOH A 62 562 218 HOH HOH . F 4 HOH A 63 563 69 HOH HOH . F 4 HOH A 64 564 82 HOH HOH . F 4 HOH A 65 565 216 HOH HOH . F 4 HOH A 66 566 134 HOH HOH . F 4 HOH A 67 567 122 HOH HOH . F 4 HOH A 68 568 56 HOH HOH . F 4 HOH A 69 569 98 HOH HOH . F 4 HOH A 70 570 7 HOH HOH . F 4 HOH A 71 571 267 HOH HOH . F 4 HOH A 72 572 144 HOH HOH . F 4 HOH A 73 573 26 HOH HOH . F 4 HOH A 74 574 193 HOH HOH . F 4 HOH A 75 575 60 HOH HOH . F 4 HOH A 76 576 191 HOH HOH . F 4 HOH A 77 577 2 HOH HOH . F 4 HOH A 78 578 97 HOH HOH . F 4 HOH A 79 579 110 HOH HOH . F 4 HOH A 80 580 8 HOH HOH . F 4 HOH A 81 581 232 HOH HOH . F 4 HOH A 82 582 54 HOH HOH . F 4 HOH A 83 583 17 HOH HOH . F 4 HOH A 84 584 80 HOH HOH . F 4 HOH A 85 585 184 HOH HOH . F 4 HOH A 86 586 43 HOH HOH . F 4 HOH A 87 587 204 HOH HOH . F 4 HOH A 88 588 86 HOH HOH . F 4 HOH A 89 589 19 HOH HOH . F 4 HOH A 90 590 195 HOH HOH . F 4 HOH A 91 591 256 HOH HOH . F 4 HOH A 92 592 243 HOH HOH . F 4 HOH A 93 593 235 HOH HOH . F 4 HOH A 94 594 5 HOH HOH . F 4 HOH A 95 595 85 HOH HOH . F 4 HOH A 96 596 78 HOH HOH . F 4 HOH A 97 597 142 HOH HOH . F 4 HOH A 98 598 221 HOH HOH . F 4 HOH A 99 599 114 HOH HOH . F 4 HOH A 100 600 181 HOH HOH . F 4 HOH A 101 601 118 HOH HOH . F 4 HOH A 102 602 16 HOH HOH . F 4 HOH A 103 603 211 HOH HOH . F 4 HOH A 104 604 125 HOH HOH . F 4 HOH A 105 605 55 HOH HOH . F 4 HOH A 106 606 162 HOH HOH . F 4 HOH A 107 607 30 HOH HOH . F 4 HOH A 108 608 129 HOH HOH . F 4 HOH A 109 609 169 HOH HOH . F 4 HOH A 110 610 112 HOH HOH . F 4 HOH A 111 611 258 HOH HOH . F 4 HOH A 112 612 73 HOH HOH . F 4 HOH A 113 613 77 HOH HOH . F 4 HOH A 114 614 141 HOH HOH . F 4 HOH A 115 615 272 HOH HOH . F 4 HOH A 116 616 32 HOH HOH . F 4 HOH A 117 617 75 HOH HOH . F 4 HOH A 118 618 260 HOH HOH . F 4 HOH A 119 619 160 HOH HOH . F 4 HOH A 120 620 266 HOH HOH . F 4 HOH A 121 621 166 HOH HOH . F 4 HOH A 122 622 150 HOH HOH . F 4 HOH A 123 623 151 HOH HOH . F 4 HOH A 124 624 241 HOH HOH . F 4 HOH A 125 625 254 HOH HOH . F 4 HOH A 126 626 135 HOH HOH . F 4 HOH A 127 627 41 HOH HOH . F 4 HOH A 128 628 116 HOH HOH . F 4 HOH A 129 629 45 HOH HOH . F 4 HOH A 130 630 57 HOH HOH . F 4 HOH A 131 631 239 HOH HOH . F 4 HOH A 132 632 131 HOH HOH . F 4 HOH A 133 633 71 HOH HOH . F 4 HOH A 134 634 237 HOH HOH . F 4 HOH A 135 635 246 HOH HOH . F 4 HOH A 136 636 47 HOH HOH . F 4 HOH A 137 637 231 HOH HOH . F 4 HOH A 138 638 121 HOH HOH . F 4 HOH A 139 639 215 HOH HOH . F 4 HOH A 140 640 46 HOH HOH . F 4 HOH A 141 641 119 HOH HOH . F 4 HOH A 142 642 276 HOH HOH . F 4 HOH A 143 643 132 HOH HOH . F 4 HOH A 144 644 106 HOH HOH . F 4 HOH A 145 645 217 HOH HOH . F 4 HOH A 146 646 242 HOH HOH . F 4 HOH A 147 647 140 HOH HOH . F 4 HOH A 148 648 51 HOH HOH . F 4 HOH A 149 649 245 HOH HOH . F 4 HOH A 150 650 148 HOH HOH . F 4 HOH A 151 651 251 HOH HOH . F 4 HOH A 152 652 178 HOH HOH . F 4 HOH A 153 653 88 HOH HOH . F 4 HOH A 154 654 103 HOH HOH . F 4 HOH A 155 655 38 HOH HOH . F 4 HOH A 156 656 165 HOH HOH . F 4 HOH A 157 657 182 HOH HOH . F 4 HOH A 158 658 105 HOH HOH . F 4 HOH A 159 659 139 HOH HOH . F 4 HOH A 160 660 278 HOH HOH . F 4 HOH A 161 661 158 HOH HOH . F 4 HOH A 162 662 87 HOH HOH . F 4 HOH A 163 663 113 HOH HOH . F 4 HOH A 164 664 224 HOH HOH . F 4 HOH A 165 665 238 HOH HOH . F 4 HOH A 166 666 223 HOH HOH . F 4 HOH A 167 667 186 HOH HOH . F 4 HOH A 168 668 220 HOH HOH . F 4 HOH A 169 669 128 HOH HOH . F 4 HOH A 170 670 65 HOH HOH . F 4 HOH A 171 671 153 HOH HOH . F 4 HOH A 172 672 67 HOH HOH . F 4 HOH A 173 673 126 HOH HOH . F 4 HOH A 174 674 95 HOH HOH . F 4 HOH A 175 675 222 HOH HOH . F 4 HOH A 176 676 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OTV . . . E 3 7.271 -0.847 20.83 1 28.88 ? N1 OTV 404 A 1 HETATM 2 C C4 OTV . . . E 3 7.01 -0.042 18.541 1 28.02 ? C4 OTV 404 A 1 HETATM 3 C C5 OTV . . . E 3 6.548 -0.131 19.852 1 28.65 ? C5 OTV 404 A 1 HETATM 4 C C6 OTV . . . E 3 8.451 -0.44 21.333 1 29.51 ? C6 OTV 404 A 1 HETATM 5 C C7 OTV . . . E 3 9.14 -1.447 22.232 1 32.35 ? C7 OTV 404 A 1 HETATM 6 C C8 OTV . . . E 3 9.92 -0.789 23.349 1 34.76 ? C8 OTV 404 A 1 HETATM 7 C C10 OTV . . . E 3 11.952 0.161 24.194 1 36.61 ? C10 OTV 404 A 1 HETATM 8 C C13 OTV . . . E 3 8.355 -0.466 27.594 1 42.65 ? C13 OTV 404 A 1 HETATM 9 C C15 OTV . . . E 3 6.898 -0.513 27.259 1 43.94 ? C15 OTV 404 A 1 HETATM 10 C C17 OTV . . . E 3 9.358 -0.652 24.614 1 36.56 ? C17 OTV 404 A 1 HETATM 11 F F2 OTV . . . E 3 6.692 1.014 25.48 1 47.63 ? F2 OTV 404 A 1 HETATM 12 C C16 OTV . . . E 3 6.113 -0.024 26.081 1 46.13 ? C16 OTV 404 A 1 HETATM 13 F F OTV . . . E 3 4.891 0.368 26.428 1 46.51 ? F OTV 404 A 1 HETATM 14 F F1 OTV . . . E 3 5.956 -0.962 25.148 1 46.32 ? F1 OTV 404 A 1 HETATM 15 C C14 OTV . . . E 3 7.42 0.533 28.199 1 43.33 ? C14 OTV 404 A 1 HETATM 16 N N2 OTV . . . E 3 9.571 0.01 26.951 1 40.37 ? N2 OTV 404 A 1 HETATM 17 C C12 OTV . . . E 3 10.086 -0.093 25.662 1 38.03 ? C12 OTV 404 A 1 HETATM 18 C C11 OTV . . . E 3 11.385 0.359 25.438 1 36.87 ? C11 OTV 404 A 1 HETATM 19 CL CL OTV . . . E 3 13.675 0.382 24.01 1 37.36 ? CL OTV 404 A 1 HETATM 20 C C9 OTV . . . E 3 11.231 -0.373 23.142 1 35.62 ? C9 OTV 404 A 1 HETATM 21 O O OTV . . . E 3 8.948 0.65 21.089 1 27.99 ? O OTV 404 A 1 HETATM 22 C C1 OTV . . . E 3 5.389 0.581 20.21 1 28.99 ? C1 OTV 404 A 1 HETATM 23 C C OTV . . . E 3 4.873 0.609 21.628 1 28.54 ? C OTV 404 A 1 HETATM 24 N N OTV . . . E 3 6.414 0.696 17.599 1 28.25 ? N OTV 404 A 1 HETATM 25 C C3 OTV . . . E 3 5.304 1.356 17.946 1 28.64 ? C3 OTV 404 A 1 HETATM 26 C C2 OTV . . . E 3 4.763 1.324 19.214 1 28.62 ? C2 OTV 404 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #