data_7GGE # _model_server_result.job_id DHYr9zqY8GCfoSnE4BFjsw _model_server_result.datetime_utc '2024-11-12 20:41:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7GGE # _exptl.entry_id 7GGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.86 _cell.angle_gamma 90 _cell.entry_id 7GGE _cell.length_a 111.911 _cell.length_b 52.654 _cell.length_c 44.612 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GGE _atom_sites.fract_transf_matrix[1][1] 0.008936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00204 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OV4 A 1 404 1101 OV4 LIG . F 2 DMS A 1 405 1102 DMS DMS . G 4 HOH A 1 501 241 HOH HOH . G 4 HOH A 2 502 234 HOH HOH . G 4 HOH A 3 503 128 HOH HOH . G 4 HOH A 4 504 62 HOH HOH . G 4 HOH A 5 505 278 HOH HOH . G 4 HOH A 6 506 277 HOH HOH . G 4 HOH A 7 507 190 HOH HOH . G 4 HOH A 8 508 35 HOH HOH . G 4 HOH A 9 509 280 HOH HOH . G 4 HOH A 10 510 286 HOH HOH . G 4 HOH A 11 511 25 HOH HOH . G 4 HOH A 12 512 93 HOH HOH . G 4 HOH A 13 513 34 HOH HOH . G 4 HOH A 14 514 49 HOH HOH . G 4 HOH A 15 515 72 HOH HOH . G 4 HOH A 16 516 95 HOH HOH . G 4 HOH A 17 517 182 HOH HOH . G 4 HOH A 18 518 257 HOH HOH . G 4 HOH A 19 519 37 HOH HOH . G 4 HOH A 20 520 29 HOH HOH . G 4 HOH A 21 521 274 HOH HOH . G 4 HOH A 22 522 115 HOH HOH . G 4 HOH A 23 523 41 HOH HOH . G 4 HOH A 24 524 131 HOH HOH . G 4 HOH A 25 525 141 HOH HOH . G 4 HOH A 26 526 24 HOH HOH . G 4 HOH A 27 527 219 HOH HOH . G 4 HOH A 28 528 51 HOH HOH . G 4 HOH A 29 529 215 HOH HOH . G 4 HOH A 30 530 9 HOH HOH . G 4 HOH A 31 531 1 HOH HOH . G 4 HOH A 32 532 59 HOH HOH . G 4 HOH A 33 533 39 HOH HOH . G 4 HOH A 34 534 61 HOH HOH . G 4 HOH A 35 535 229 HOH HOH . G 4 HOH A 36 536 135 HOH HOH . G 4 HOH A 37 537 73 HOH HOH . G 4 HOH A 38 538 201 HOH HOH . G 4 HOH A 39 539 75 HOH HOH . G 4 HOH A 40 540 150 HOH HOH . G 4 HOH A 41 541 85 HOH HOH . G 4 HOH A 42 542 242 HOH HOH . G 4 HOH A 43 543 196 HOH HOH . G 4 HOH A 44 544 69 HOH HOH . G 4 HOH A 45 545 17 HOH HOH . G 4 HOH A 46 546 82 HOH HOH . G 4 HOH A 47 547 67 HOH HOH . G 4 HOH A 48 548 78 HOH HOH . G 4 HOH A 49 549 20 HOH HOH . G 4 HOH A 50 550 211 HOH HOH . G 4 HOH A 51 551 76 HOH HOH . G 4 HOH A 52 552 56 HOH HOH . G 4 HOH A 53 553 30 HOH HOH . G 4 HOH A 54 554 255 HOH HOH . G 4 HOH A 55 555 42 HOH HOH . G 4 HOH A 56 556 191 HOH HOH . G 4 HOH A 57 557 120 HOH HOH . G 4 HOH A 58 558 148 HOH HOH . G 4 HOH A 59 559 99 HOH HOH . G 4 HOH A 60 560 113 HOH HOH . G 4 HOH A 61 561 187 HOH HOH . G 4 HOH A 62 562 129 HOH HOH . G 4 HOH A 63 563 4 HOH HOH . G 4 HOH A 64 564 36 HOH HOH . G 4 HOH A 65 565 284 HOH HOH . G 4 HOH A 66 566 52 HOH HOH . G 4 HOH A 67 567 139 HOH HOH . G 4 HOH A 68 568 178 HOH HOH . G 4 HOH A 69 569 27 HOH HOH . G 4 HOH A 70 570 88 HOH HOH . G 4 HOH A 71 571 168 HOH HOH . G 4 HOH A 72 572 101 HOH HOH . G 4 HOH A 73 573 3 HOH HOH . G 4 HOH A 74 574 152 HOH HOH . G 4 HOH A 75 575 189 HOH HOH . G 4 HOH A 76 576 164 HOH HOH . G 4 HOH A 77 577 44 HOH HOH . G 4 HOH A 78 578 15 HOH HOH . G 4 HOH A 79 579 269 HOH HOH . G 4 HOH A 80 580 147 HOH HOH . G 4 HOH A 81 581 244 HOH HOH . G 4 HOH A 82 582 285 HOH HOH . G 4 HOH A 83 583 261 HOH HOH . G 4 HOH A 84 584 159 HOH HOH . G 4 HOH A 85 585 266 HOH HOH . G 4 HOH A 86 586 19 HOH HOH . G 4 HOH A 87 587 245 HOH HOH . G 4 HOH A 88 588 98 HOH HOH . G 4 HOH A 89 589 54 HOH HOH . G 4 HOH A 90 590 40 HOH HOH . G 4 HOH A 91 591 105 HOH HOH . G 4 HOH A 92 592 236 HOH HOH . G 4 HOH A 93 593 271 HOH HOH . G 4 HOH A 94 594 50 HOH HOH . G 4 HOH A 95 595 89 HOH HOH . G 4 HOH A 96 596 118 HOH HOH . G 4 HOH A 97 597 125 HOH HOH . G 4 HOH A 98 598 243 HOH HOH . G 4 HOH A 99 599 252 HOH HOH . G 4 HOH A 100 600 65 HOH HOH . G 4 HOH A 101 601 11 HOH HOH . G 4 HOH A 102 602 239 HOH HOH . G 4 HOH A 103 603 235 HOH HOH . G 4 HOH A 104 604 97 HOH HOH . G 4 HOH A 105 605 112 HOH HOH . G 4 HOH A 106 606 260 HOH HOH . G 4 HOH A 107 607 108 HOH HOH . G 4 HOH A 108 608 140 HOH HOH . G 4 HOH A 109 609 259 HOH HOH . G 4 HOH A 110 610 225 HOH HOH . G 4 HOH A 111 611 106 HOH HOH . G 4 HOH A 112 612 100 HOH HOH . G 4 HOH A 113 613 116 HOH HOH . G 4 HOH A 114 614 5 HOH HOH . G 4 HOH A 115 615 64 HOH HOH . G 4 HOH A 116 616 10 HOH HOH . G 4 HOH A 117 617 26 HOH HOH . G 4 HOH A 118 618 12 HOH HOH . G 4 HOH A 119 619 246 HOH HOH . G 4 HOH A 120 620 6 HOH HOH . G 4 HOH A 121 621 114 HOH HOH . G 4 HOH A 122 622 146 HOH HOH . G 4 HOH A 123 623 21 HOH HOH . G 4 HOH A 124 624 145 HOH HOH . G 4 HOH A 125 625 48 HOH HOH . G 4 HOH A 126 626 185 HOH HOH . G 4 HOH A 127 627 84 HOH HOH . G 4 HOH A 128 628 247 HOH HOH . G 4 HOH A 129 629 68 HOH HOH . G 4 HOH A 130 630 31 HOH HOH . G 4 HOH A 131 631 258 HOH HOH . G 4 HOH A 132 632 214 HOH HOH . G 4 HOH A 133 633 119 HOH HOH . G 4 HOH A 134 634 136 HOH HOH . G 4 HOH A 135 635 231 HOH HOH . G 4 HOH A 136 636 177 HOH HOH . G 4 HOH A 137 637 204 HOH HOH . G 4 HOH A 138 638 262 HOH HOH . G 4 HOH A 139 639 83 HOH HOH . G 4 HOH A 140 640 250 HOH HOH . G 4 HOH A 141 641 263 HOH HOH . G 4 HOH A 142 642 90 HOH HOH . G 4 HOH A 143 643 7 HOH HOH . G 4 HOH A 144 644 33 HOH HOH . G 4 HOH A 145 645 130 HOH HOH . G 4 HOH A 146 646 28 HOH HOH . G 4 HOH A 147 647 270 HOH HOH . G 4 HOH A 148 648 253 HOH HOH . G 4 HOH A 149 649 142 HOH HOH . G 4 HOH A 150 650 162 HOH HOH . G 4 HOH A 151 651 199 HOH HOH . G 4 HOH A 152 652 79 HOH HOH . G 4 HOH A 153 653 143 HOH HOH . G 4 HOH A 154 654 2 HOH HOH . G 4 HOH A 155 655 14 HOH HOH . G 4 HOH A 156 656 184 HOH HOH . G 4 HOH A 157 657 23 HOH HOH . G 4 HOH A 158 658 281 HOH HOH . G 4 HOH A 159 659 96 HOH HOH . G 4 HOH A 160 660 55 HOH HOH . G 4 HOH A 161 661 194 HOH HOH . G 4 HOH A 162 662 58 HOH HOH . G 4 HOH A 163 663 213 HOH HOH . G 4 HOH A 164 664 137 HOH HOH . G 4 HOH A 165 665 256 HOH HOH . G 4 HOH A 166 666 109 HOH HOH . G 4 HOH A 167 667 198 HOH HOH . G 4 HOH A 168 668 212 HOH HOH . G 4 HOH A 169 669 173 HOH HOH . G 4 HOH A 170 670 18 HOH HOH . G 4 HOH A 171 671 91 HOH HOH . G 4 HOH A 172 672 200 HOH HOH . G 4 HOH A 173 673 181 HOH HOH . G 4 HOH A 174 674 60 HOH HOH . G 4 HOH A 175 675 249 HOH HOH . G 4 HOH A 176 676 103 HOH HOH . G 4 HOH A 177 677 74 HOH HOH . G 4 HOH A 178 678 13 HOH HOH . G 4 HOH A 179 679 154 HOH HOH . G 4 HOH A 180 680 153 HOH HOH . G 4 HOH A 181 681 126 HOH HOH . G 4 HOH A 182 682 92 HOH HOH . G 4 HOH A 183 683 53 HOH HOH . G 4 HOH A 184 684 80 HOH HOH . G 4 HOH A 185 685 203 HOH HOH . G 4 HOH A 186 686 43 HOH HOH . G 4 HOH A 187 687 237 HOH HOH . G 4 HOH A 188 688 179 HOH HOH . G 4 HOH A 189 689 276 HOH HOH . G 4 HOH A 190 690 22 HOH HOH . G 4 HOH A 191 691 122 HOH HOH . G 4 HOH A 192 692 87 HOH HOH . G 4 HOH A 193 693 71 HOH HOH . G 4 HOH A 194 694 107 HOH HOH . G 4 HOH A 195 695 134 HOH HOH . G 4 HOH A 196 696 77 HOH HOH . G 4 HOH A 197 697 151 HOH HOH . G 4 HOH A 198 698 197 HOH HOH . G 4 HOH A 199 699 16 HOH HOH . G 4 HOH A 200 700 172 HOH HOH . G 4 HOH A 201 701 202 HOH HOH . G 4 HOH A 202 702 218 HOH HOH . G 4 HOH A 203 703 160 HOH HOH . G 4 HOH A 204 704 127 HOH HOH . G 4 HOH A 205 705 63 HOH HOH . G 4 HOH A 206 706 288 HOH HOH . G 4 HOH A 207 707 57 HOH HOH . G 4 HOH A 208 708 188 HOH HOH . G 4 HOH A 209 709 158 HOH HOH . G 4 HOH A 210 710 8 HOH HOH . G 4 HOH A 211 711 240 HOH HOH . G 4 HOH A 212 712 208 HOH HOH . G 4 HOH A 213 713 46 HOH HOH . G 4 HOH A 214 714 224 HOH HOH . G 4 HOH A 215 715 81 HOH HOH . G 4 HOH A 216 716 186 HOH HOH . G 4 HOH A 217 717 161 HOH HOH . G 4 HOH A 218 718 104 HOH HOH . G 4 HOH A 219 719 166 HOH HOH . G 4 HOH A 220 720 233 HOH HOH . G 4 HOH A 221 721 279 HOH HOH . G 4 HOH A 222 722 156 HOH HOH . G 4 HOH A 223 723 254 HOH HOH . G 4 HOH A 224 724 248 HOH HOH . G 4 HOH A 225 725 47 HOH HOH . G 4 HOH A 226 726 155 HOH HOH . G 4 HOH A 227 727 32 HOH HOH . G 4 HOH A 228 728 170 HOH HOH . G 4 HOH A 229 729 264 HOH HOH . G 4 HOH A 230 730 123 HOH HOH . G 4 HOH A 231 731 216 HOH HOH . G 4 HOH A 232 732 111 HOH HOH . G 4 HOH A 233 733 193 HOH HOH . G 4 HOH A 234 734 265 HOH HOH . G 4 HOH A 235 735 222 HOH HOH . G 4 HOH A 236 736 205 HOH HOH . G 4 HOH A 237 737 267 HOH HOH . G 4 HOH A 238 738 220 HOH HOH . G 4 HOH A 239 739 183 HOH HOH . G 4 HOH A 240 740 180 HOH HOH . G 4 HOH A 241 741 70 HOH HOH . G 4 HOH A 242 742 165 HOH HOH . G 4 HOH A 243 743 283 HOH HOH . G 4 HOH A 244 744 138 HOH HOH . G 4 HOH A 245 745 226 HOH HOH . G 4 HOH A 246 746 132 HOH HOH . G 4 HOH A 247 747 206 HOH HOH . G 4 HOH A 248 748 251 HOH HOH . G 4 HOH A 249 749 169 HOH HOH . G 4 HOH A 250 750 163 HOH HOH . G 4 HOH A 251 751 210 HOH HOH . G 4 HOH A 252 752 275 HOH HOH . G 4 HOH A 253 753 144 HOH HOH . G 4 HOH A 254 754 176 HOH HOH . G 4 HOH A 255 755 195 HOH HOH . G 4 HOH A 256 756 124 HOH HOH . G 4 HOH A 257 757 167 HOH HOH . G 4 HOH A 258 758 287 HOH HOH . G 4 HOH A 259 759 149 HOH HOH . G 4 HOH A 260 760 102 HOH HOH . G 4 HOH A 261 761 227 HOH HOH . G 4 HOH A 262 762 217 HOH HOH . G 4 HOH A 263 763 86 HOH HOH . G 4 HOH A 264 764 268 HOH HOH . G 4 HOH A 265 765 110 HOH HOH . G 4 HOH A 266 766 228 HOH HOH . G 4 HOH A 267 767 121 HOH HOH . G 4 HOH A 268 768 175 HOH HOH . G 4 HOH A 269 769 45 HOH HOH . G 4 HOH A 270 770 238 HOH HOH . G 4 HOH A 271 771 207 HOH HOH . G 4 HOH A 272 772 171 HOH HOH . G 4 HOH A 273 773 66 HOH HOH . G 4 HOH A 274 774 209 HOH HOH . G 4 HOH A 275 775 282 HOH HOH . G 4 HOH A 276 776 117 HOH HOH . G 4 HOH A 277 777 133 HOH HOH . G 4 HOH A 278 778 273 HOH HOH . G 4 HOH A 279 779 223 HOH HOH . G 4 HOH A 280 780 232 HOH HOH . G 4 HOH A 281 781 192 HOH HOH . G 4 HOH A 282 782 157 HOH HOH . G 4 HOH A 283 783 38 HOH HOH . G 4 HOH A 284 784 230 HOH HOH . G 4 HOH A 285 785 272 HOH HOH . G 4 HOH A 286 786 94 HOH HOH . G 4 HOH A 287 787 221 HOH HOH . G 4 HOH A 288 788 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 2.259 -19.059 8.027 1 39.16 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 2 3.577 -18.831 8.682 1 39.35 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 2 1.142 -17.964 8.854 1 39.05 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 2 1.698 -20.545 8.82 1 39.31 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #