data_7GGJ # _model_server_result.job_id Kf35yZnlYZTHLrJ5vsqkZg _model_server_result.datetime_utc '2024-11-21 08:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GGJ # _exptl.entry_id 7GGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.776 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-6-chloro-N-(2,7-naphthyridin-4-yl)-3,4-dihydro-2H-1-benzopyran-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.17 _cell.angle_gamma 90 _cell.entry_id 7GGJ _cell.length_a 113.948 _cell.length_b 53.415 _cell.length_c 44.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H14 Cl N3 O2' _chem_comp.formula_weight 339.776 _chem_comp.id OYF _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-6-chloro-N-(2,7-naphthyridin-4-yl)-3,4-dihydro-2H-1-benzopyran-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C14 OYF doub 246 n y N2 C15 OYF sing 247 n y C14 C13 OYF sing 248 n y C15 C8 OYF doub 249 n y C13 C12 OYF doub 250 n y C13 C9 OYF sing 251 n y C12 N1 OYF sing 252 n y C8 C9 OYF sing 253 n y C8 N OYF sing 254 n n C9 C10 OYF doub 255 n y CL C OYF sing 256 n n N1 C11 OYF doub 257 n y O1 C7 OYF doub 258 n n N C7 OYF sing 259 n n C7 C6 OYF sing 260 n n C10 C11 OYF sing 261 n y C C1 OYF doub 262 n y C C17 OYF sing 263 n y C1 C2 OYF sing 264 n y C17 C16 OYF doub 265 n y C6 C2 OYF sing 266 n n C6 C5 OYF sing 267 n n C2 C3 OYF doub 268 n y C16 C3 OYF sing 269 n y C3 O OYF sing 270 n n C5 C4 OYF sing 271 n n C4 O OYF sing 272 n n C4 H1 OYF sing 273 n n C4 H2 OYF sing 274 n n C5 H3 OYF sing 275 n n C5 H4 OYF sing 276 n n C6 H5 OYF sing 277 n n C10 H6 OYF sing 278 n n C15 H7 OYF sing 279 n n C17 H8 OYF sing 280 n n C16 H9 OYF sing 281 n n C1 H10 OYF sing 282 n n N H11 OYF sing 283 n n C14 H12 OYF sing 284 n n C12 H13 OYF sing 285 n n C11 H14 OYF sing 286 n n # _atom_sites.entry_id 7GGJ _atom_sites.fract_transf_matrix[1][1] 0.008776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001733 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 OYF A 1 404 1101 OYF LIG . F 4 HOH A 1 501 215 HOH HOH . F 4 HOH A 2 502 261 HOH HOH . F 4 HOH A 3 503 22 HOH HOH . F 4 HOH A 4 504 81 HOH HOH . F 4 HOH A 5 505 101 HOH HOH . F 4 HOH A 6 506 9 HOH HOH . F 4 HOH A 7 507 90 HOH HOH . F 4 HOH A 8 508 35 HOH HOH . F 4 HOH A 9 509 291 HOH HOH . F 4 HOH A 10 510 210 HOH HOH . F 4 HOH A 11 511 10 HOH HOH . F 4 HOH A 12 512 252 HOH HOH . F 4 HOH A 13 513 229 HOH HOH . F 4 HOH A 14 514 36 HOH HOH . F 4 HOH A 15 515 107 HOH HOH . F 4 HOH A 16 516 1 HOH HOH . F 4 HOH A 17 517 79 HOH HOH . F 4 HOH A 18 518 231 HOH HOH . F 4 HOH A 19 519 34 HOH HOH . F 4 HOH A 20 520 91 HOH HOH . F 4 HOH A 21 521 29 HOH HOH . F 4 HOH A 22 522 12 HOH HOH . F 4 HOH A 23 523 20 HOH HOH . F 4 HOH A 24 524 31 HOH HOH . F 4 HOH A 25 525 37 HOH HOH . F 4 HOH A 26 526 74 HOH HOH . F 4 HOH A 27 527 73 HOH HOH . F 4 HOH A 28 528 159 HOH HOH . F 4 HOH A 29 529 262 HOH HOH . F 4 HOH A 30 530 100 HOH HOH . F 4 HOH A 31 531 175 HOH HOH . F 4 HOH A 32 532 102 HOH HOH . F 4 HOH A 33 533 117 HOH HOH . F 4 HOH A 34 534 85 HOH HOH . F 4 HOH A 35 535 41 HOH HOH . F 4 HOH A 36 536 268 HOH HOH . F 4 HOH A 37 537 136 HOH HOH . F 4 HOH A 38 538 70 HOH HOH . F 4 HOH A 39 539 143 HOH HOH . F 4 HOH A 40 540 60 HOH HOH . F 4 HOH A 41 541 42 HOH HOH . F 4 HOH A 42 542 119 HOH HOH . F 4 HOH A 43 543 247 HOH HOH . F 4 HOH A 44 544 66 HOH HOH . F 4 HOH A 45 545 104 HOH HOH . F 4 HOH A 46 546 52 HOH HOH . F 4 HOH A 47 547 27 HOH HOH . F 4 HOH A 48 548 232 HOH HOH . F 4 HOH A 49 549 4 HOH HOH . F 4 HOH A 50 550 279 HOH HOH . F 4 HOH A 51 551 112 HOH HOH . F 4 HOH A 52 552 155 HOH HOH . F 4 HOH A 53 553 278 HOH HOH . F 4 HOH A 54 554 15 HOH HOH . F 4 HOH A 55 555 99 HOH HOH . F 4 HOH A 56 556 57 HOH HOH . F 4 HOH A 57 557 146 HOH HOH . F 4 HOH A 58 558 62 HOH HOH . F 4 HOH A 59 559 123 HOH HOH . F 4 HOH A 60 560 200 HOH HOH . F 4 HOH A 61 561 53 HOH HOH . F 4 HOH A 62 562 40 HOH HOH . F 4 HOH A 63 563 64 HOH HOH . F 4 HOH A 64 564 11 HOH HOH . F 4 HOH A 65 565 142 HOH HOH . F 4 HOH A 66 566 84 HOH HOH . F 4 HOH A 67 567 156 HOH HOH . F 4 HOH A 68 568 256 HOH HOH . F 4 HOH A 69 569 6 HOH HOH . F 4 HOH A 70 570 80 HOH HOH . F 4 HOH A 71 571 149 HOH HOH . F 4 HOH A 72 572 106 HOH HOH . F 4 HOH A 73 573 75 HOH HOH . F 4 HOH A 74 574 96 HOH HOH . F 4 HOH A 75 575 177 HOH HOH . F 4 HOH A 76 576 88 HOH HOH . F 4 HOH A 77 577 50 HOH HOH . F 4 HOH A 78 578 211 HOH HOH . F 4 HOH A 79 579 14 HOH HOH . F 4 HOH A 80 580 5 HOH HOH . F 4 HOH A 81 581 59 HOH HOH . F 4 HOH A 82 582 17 HOH HOH . F 4 HOH A 83 583 21 HOH HOH . F 4 HOH A 84 584 157 HOH HOH . F 4 HOH A 85 585 28 HOH HOH . F 4 HOH A 86 586 288 HOH HOH . F 4 HOH A 87 587 154 HOH HOH . F 4 HOH A 88 588 3 HOH HOH . F 4 HOH A 89 589 18 HOH HOH . F 4 HOH A 90 590 30 HOH HOH . F 4 HOH A 91 591 83 HOH HOH . F 4 HOH A 92 592 135 HOH HOH . F 4 HOH A 93 593 115 HOH HOH . F 4 HOH A 94 594 26 HOH HOH . F 4 HOH A 95 595 76 HOH HOH . F 4 HOH A 96 596 108 HOH HOH . F 4 HOH A 97 597 272 HOH HOH . F 4 HOH A 98 598 118 HOH HOH . F 4 HOH A 99 599 127 HOH HOH . F 4 HOH A 100 600 124 HOH HOH . F 4 HOH A 101 601 160 HOH HOH . F 4 HOH A 102 602 137 HOH HOH . F 4 HOH A 103 603 286 HOH HOH . F 4 HOH A 104 604 54 HOH HOH . F 4 HOH A 105 605 129 HOH HOH . F 4 HOH A 106 606 55 HOH HOH . F 4 HOH A 107 607 170 HOH HOH . F 4 HOH A 108 608 24 HOH HOH . F 4 HOH A 109 609 267 HOH HOH . F 4 HOH A 110 610 133 HOH HOH . F 4 HOH A 111 611 2 HOH HOH . F 4 HOH A 112 612 13 HOH HOH . F 4 HOH A 113 613 181 HOH HOH . F 4 HOH A 114 614 93 HOH HOH . F 4 HOH A 115 615 120 HOH HOH . F 4 HOH A 116 616 162 HOH HOH . F 4 HOH A 117 617 97 HOH HOH . F 4 HOH A 118 618 86 HOH HOH . F 4 HOH A 119 619 8 HOH HOH . F 4 HOH A 120 620 110 HOH HOH . F 4 HOH A 121 621 235 HOH HOH . F 4 HOH A 122 622 7 HOH HOH . F 4 HOH A 123 623 201 HOH HOH . F 4 HOH A 124 624 197 HOH HOH . F 4 HOH A 125 625 144 HOH HOH . F 4 HOH A 126 626 98 HOH HOH . F 4 HOH A 127 627 212 HOH HOH . F 4 HOH A 128 628 92 HOH HOH . F 4 HOH A 129 629 43 HOH HOH . F 4 HOH A 130 630 68 HOH HOH . F 4 HOH A 131 631 69 HOH HOH . F 4 HOH A 132 632 274 HOH HOH . F 4 HOH A 133 633 89 HOH HOH . F 4 HOH A 134 634 19 HOH HOH . F 4 HOH A 135 635 32 HOH HOH . F 4 HOH A 136 636 214 HOH HOH . F 4 HOH A 137 637 207 HOH HOH . F 4 HOH A 138 638 285 HOH HOH . F 4 HOH A 139 639 241 HOH HOH . F 4 HOH A 140 640 23 HOH HOH . F 4 HOH A 141 641 39 HOH HOH . F 4 HOH A 142 642 44 HOH HOH . F 4 HOH A 143 643 16 HOH HOH . F 4 HOH A 144 644 49 HOH HOH . F 4 HOH A 145 645 45 HOH HOH . F 4 HOH A 146 646 244 HOH HOH . F 4 HOH A 147 647 264 HOH HOH . F 4 HOH A 148 648 121 HOH HOH . F 4 HOH A 149 649 194 HOH HOH . F 4 HOH A 150 650 169 HOH HOH . F 4 HOH A 151 651 56 HOH HOH . F 4 HOH A 152 652 166 HOH HOH . F 4 HOH A 153 653 216 HOH HOH . F 4 HOH A 154 654 277 HOH HOH . F 4 HOH A 155 655 82 HOH HOH . F 4 HOH A 156 656 233 HOH HOH . F 4 HOH A 157 657 116 HOH HOH . F 4 HOH A 158 658 191 HOH HOH . F 4 HOH A 159 659 182 HOH HOH . F 4 HOH A 160 660 257 HOH HOH . F 4 HOH A 161 661 266 HOH HOH . F 4 HOH A 162 662 163 HOH HOH . F 4 HOH A 163 663 78 HOH HOH . F 4 HOH A 164 664 48 HOH HOH . F 4 HOH A 165 665 94 HOH HOH . F 4 HOH A 166 666 183 HOH HOH . F 4 HOH A 167 667 58 HOH HOH . F 4 HOH A 168 668 253 HOH HOH . F 4 HOH A 169 669 125 HOH HOH . F 4 HOH A 170 670 206 HOH HOH . F 4 HOH A 171 671 72 HOH HOH . F 4 HOH A 172 672 77 HOH HOH . F 4 HOH A 173 673 275 HOH HOH . F 4 HOH A 174 674 105 HOH HOH . F 4 HOH A 175 675 254 HOH HOH . F 4 HOH A 176 676 230 HOH HOH . F 4 HOH A 177 677 243 HOH HOH . F 4 HOH A 178 678 51 HOH HOH . F 4 HOH A 179 679 167 HOH HOH . F 4 HOH A 180 680 109 HOH HOH . F 4 HOH A 181 681 111 HOH HOH . F 4 HOH A 182 682 114 HOH HOH . F 4 HOH A 183 683 33 HOH HOH . F 4 HOH A 184 684 173 HOH HOH . F 4 HOH A 185 685 61 HOH HOH . F 4 HOH A 186 686 242 HOH HOH . F 4 HOH A 187 687 193 HOH HOH . F 4 HOH A 188 688 196 HOH HOH . F 4 HOH A 189 689 130 HOH HOH . F 4 HOH A 190 690 237 HOH HOH . F 4 HOH A 191 691 259 HOH HOH . F 4 HOH A 192 692 47 HOH HOH . F 4 HOH A 193 693 221 HOH HOH . F 4 HOH A 194 694 245 HOH HOH . F 4 HOH A 195 695 158 HOH HOH . F 4 HOH A 196 696 227 HOH HOH . F 4 HOH A 197 697 281 HOH HOH . F 4 HOH A 198 698 217 HOH HOH . F 4 HOH A 199 699 176 HOH HOH . F 4 HOH A 200 700 213 HOH HOH . F 4 HOH A 201 701 290 HOH HOH . F 4 HOH A 202 702 209 HOH HOH . F 4 HOH A 203 703 165 HOH HOH . F 4 HOH A 204 704 251 HOH HOH . F 4 HOH A 205 705 269 HOH HOH . F 4 HOH A 206 706 131 HOH HOH . F 4 HOH A 207 707 184 HOH HOH . F 4 HOH A 208 708 223 HOH HOH . F 4 HOH A 209 709 145 HOH HOH . F 4 HOH A 210 710 71 HOH HOH . F 4 HOH A 211 711 250 HOH HOH . F 4 HOH A 212 712 226 HOH HOH . F 4 HOH A 213 713 189 HOH HOH . F 4 HOH A 214 714 289 HOH HOH . F 4 HOH A 215 715 103 HOH HOH . F 4 HOH A 216 716 187 HOH HOH . F 4 HOH A 217 717 38 HOH HOH . F 4 HOH A 218 718 113 HOH HOH . F 4 HOH A 219 719 258 HOH HOH . F 4 HOH A 220 720 174 HOH HOH . F 4 HOH A 221 721 138 HOH HOH . F 4 HOH A 222 722 87 HOH HOH . F 4 HOH A 223 723 246 HOH HOH . F 4 HOH A 224 724 140 HOH HOH . F 4 HOH A 225 725 46 HOH HOH . F 4 HOH A 226 726 168 HOH HOH . F 4 HOH A 227 727 225 HOH HOH . F 4 HOH A 228 728 255 HOH HOH . F 4 HOH A 229 729 287 HOH HOH . F 4 HOH A 230 730 128 HOH HOH . F 4 HOH A 231 731 139 HOH HOH . F 4 HOH A 232 732 284 HOH HOH . F 4 HOH A 233 733 224 HOH HOH . F 4 HOH A 234 734 67 HOH HOH . F 4 HOH A 235 735 282 HOH HOH . F 4 HOH A 236 736 248 HOH HOH . F 4 HOH A 237 737 95 HOH HOH . F 4 HOH A 238 738 220 HOH HOH . F 4 HOH A 239 739 276 HOH HOH . F 4 HOH A 240 740 188 HOH HOH . F 4 HOH A 241 741 192 HOH HOH . F 4 HOH A 242 742 280 HOH HOH . F 4 HOH A 243 743 283 HOH HOH . F 4 HOH A 244 744 236 HOH HOH . F 4 HOH A 245 745 185 HOH HOH . F 4 HOH A 246 746 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OYF . . . E 3 3.853 2.021 20.426 0.7 33.28 ? N1 OYF 404 A 1 HETATM 2 C C4 OYF . . . E 3 9.918 0.426 24.267 0.7 37.88 ? C4 OYF 404 A 1 HETATM 3 C C5 OYF . . . E 3 9.472 -0.907 23.72 0.7 37.61 ? C5 OYF 404 A 1 HETATM 4 C C6 OYF . . . E 3 10.122 -1.162 22.343 0.7 37.13 ? C6 OYF 404 A 1 HETATM 5 C C7 OYF . . . E 3 9.551 -0.27 21.237 0.7 35.97 ? C7 OYF 404 A 1 HETATM 6 C C8 OYF . . . E 3 7.463 -0.132 19.878 0.7 33.87 ? C8 OYF 404 A 1 HETATM 7 C C10 OYF . . . E 3 5.63 0.726 21.362 0.7 33.4 ? C10 OYF 404 A 1 HETATM 8 C C13 OYF . . . E 3 5.554 1.098 18.967 0.7 33.31 ? C13 OYF 404 A 1 HETATM 9 C C15 OYF . . . E 3 7.931 -0.194 18.567 0.7 33.32 ? C15 OYF 404 A 1 HETATM 10 C C17 OYF . . . E 3 14.24 0.073 22.303 0.7 38.29 ? C17 OYF 404 A 1 HETATM 11 O O1 OYF . . . E 3 10.238 0.561 20.649 0.7 35.81 ? O1 OYF 404 A 1 HETATM 12 O O OYF . . . E 3 11.347 0.51 24.411 0.7 38.04 ? O OYF 404 A 1 HETATM 13 C C16 OYF . . . E 3 13.38 0.566 23.266 0.7 38.28 ? C16 OYF 404 A 1 HETATM 14 C C3 OYF . . . E 3 12.079 0.09 23.328 0.7 37.96 ? C3 OYF 404 A 1 HETATM 15 C C2 OYF . . . E 3 11.603 -0.846 22.407 0.7 37.63 ? C2 OYF 404 A 1 HETATM 16 C C1 OYF . . . E 3 12.497 -1.368 21.477 0.7 37.89 ? C1 OYF 404 A 1 HETATM 17 C C OYF . . . E 3 13.794 -0.903 21.441 0.7 38.27 ? C OYF 404 A 1 HETATM 18 CL CL OYF . . . E 3 14.903 -1.603 20.31 0.7 38.65 ? CL OYF 404 A 1 HETATM 19 N N OYF . . . E 3 8.225 -0.406 21.027 0.7 35 ? N OYF 404 A 1 HETATM 20 C C14 OYF . . . E 3 6.155 0.932 17.698 0.7 33.12 ? C14 OYF 404 A 1 HETATM 21 N N2 OYF . . . E 3 7.302 0.302 17.497 0.7 33 ? N2 OYF 404 A 1 HETATM 22 C C12 OYF . . . E 3 4.377 1.844 19.219 0.7 33.42 ? C12 OYF 404 A 1 HETATM 23 C C11 OYF . . . E 3 4.485 1.459 21.466 0.7 33.27 ? C11 OYF 404 A 1 HETATM 24 C C9 OYF . . . E 3 6.212 0.526 20.087 0.7 33.47 ? C9 OYF 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #