data_7GGO # _model_server_result.job_id j-dXpQth9gMeZarRRrV5vw _model_server_result.datetime_utc '2024-11-21 08:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7GGO # _exptl.entry_id 7GGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.54 _cell.angle_gamma 90 _cell.entry_id 7GGO _cell.length_a 113.183 _cell.length_b 53.418 _cell.length_c 44.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GGO _atom_sites.fract_transf_matrix[1][1] 0.008835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001804 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 P3L A 1 404 1101 P3L LIG . F 2 DMS A 1 405 1102 DMS DMS . G 2 DMS A 1 406 1103 DMS DMS . H 4 HOH A 1 501 261 HOH HOH . H 4 HOH A 2 502 34 HOH HOH . H 4 HOH A 3 503 9 HOH HOH . H 4 HOH A 4 504 307 HOH HOH . H 4 HOH A 5 505 278 HOH HOH . H 4 HOH A 6 506 90 HOH HOH . H 4 HOH A 7 507 29 HOH HOH . H 4 HOH A 8 508 138 HOH HOH . H 4 HOH A 9 509 35 HOH HOH . H 4 HOH A 10 510 206 HOH HOH . H 4 HOH A 11 511 199 HOH HOH . H 4 HOH A 12 512 136 HOH HOH . H 4 HOH A 13 513 293 HOH HOH . H 4 HOH A 14 514 143 HOH HOH . H 4 HOH A 15 515 1 HOH HOH . H 4 HOH A 16 516 161 HOH HOH . H 4 HOH A 17 517 290 HOH HOH . H 4 HOH A 18 518 308 HOH HOH . H 4 HOH A 19 519 263 HOH HOH . H 4 HOH A 20 520 50 HOH HOH . H 4 HOH A 21 521 211 HOH HOH . H 4 HOH A 22 522 172 HOH HOH . H 4 HOH A 23 523 37 HOH HOH . H 4 HOH A 24 524 203 HOH HOH . H 4 HOH A 25 525 106 HOH HOH . H 4 HOH A 26 526 102 HOH HOH . H 4 HOH A 27 527 70 HOH HOH . H 4 HOH A 28 528 146 HOH HOH . H 4 HOH A 29 529 96 HOH HOH . H 4 HOH A 30 530 252 HOH HOH . H 4 HOH A 31 531 83 HOH HOH . H 4 HOH A 32 532 84 HOH HOH . H 4 HOH A 33 533 301 HOH HOH . H 4 HOH A 34 534 74 HOH HOH . H 4 HOH A 35 535 64 HOH HOH . H 4 HOH A 36 536 66 HOH HOH . H 4 HOH A 37 537 175 HOH HOH . H 4 HOH A 38 538 124 HOH HOH . H 4 HOH A 39 539 79 HOH HOH . H 4 HOH A 40 540 52 HOH HOH . H 4 HOH A 41 541 298 HOH HOH . H 4 HOH A 42 542 156 HOH HOH . H 4 HOH A 43 543 21 HOH HOH . H 4 HOH A 44 544 24 HOH HOH . H 4 HOH A 45 545 60 HOH HOH . H 4 HOH A 46 546 41 HOH HOH . H 4 HOH A 47 547 62 HOH HOH . H 4 HOH A 48 548 267 HOH HOH . H 4 HOH A 49 549 69 HOH HOH . H 4 HOH A 50 550 20 HOH HOH . H 4 HOH A 51 551 157 HOH HOH . H 4 HOH A 52 552 155 HOH HOH . H 4 HOH A 53 553 297 HOH HOH . H 4 HOH A 54 554 200 HOH HOH . H 4 HOH A 55 555 210 HOH HOH . H 4 HOH A 56 556 4 HOH HOH . H 4 HOH A 57 557 10 HOH HOH . H 4 HOH A 58 558 107 HOH HOH . H 4 HOH A 59 559 100 HOH HOH . H 4 HOH A 60 560 300 HOH HOH . H 4 HOH A 61 561 256 HOH HOH . H 4 HOH A 62 562 148 HOH HOH . H 4 HOH A 63 563 33 HOH HOH . H 4 HOH A 64 564 239 HOH HOH . H 4 HOH A 65 565 108 HOH HOH . H 4 HOH A 66 566 99 HOH HOH . H 4 HOH A 67 567 19 HOH HOH . H 4 HOH A 68 568 42 HOH HOH . H 4 HOH A 69 569 119 HOH HOH . H 4 HOH A 70 570 110 HOH HOH . H 4 HOH A 71 571 17 HOH HOH . H 4 HOH A 72 572 288 HOH HOH . H 4 HOH A 73 573 65 HOH HOH . H 4 HOH A 74 574 247 HOH HOH . H 4 HOH A 75 575 118 HOH HOH . H 4 HOH A 76 576 135 HOH HOH . H 4 HOH A 77 577 150 HOH HOH . H 4 HOH A 78 578 11 HOH HOH . H 4 HOH A 79 579 68 HOH HOH . H 4 HOH A 80 580 120 HOH HOH . H 4 HOH A 81 581 44 HOH HOH . H 4 HOH A 82 582 59 HOH HOH . H 4 HOH A 83 583 40 HOH HOH . H 4 HOH A 84 584 53 HOH HOH . H 4 HOH A 85 585 309 HOH HOH . H 4 HOH A 86 586 160 HOH HOH . H 4 HOH A 87 587 127 HOH HOH . H 4 HOH A 88 588 57 HOH HOH . H 4 HOH A 89 589 3 HOH HOH . H 4 HOH A 90 590 265 HOH HOH . H 4 HOH A 91 591 285 HOH HOH . H 4 HOH A 92 592 117 HOH HOH . H 4 HOH A 93 593 31 HOH HOH . H 4 HOH A 94 594 85 HOH HOH . H 4 HOH A 95 595 253 HOH HOH . H 4 HOH A 96 596 14 HOH HOH . H 4 HOH A 97 597 39 HOH HOH . H 4 HOH A 98 598 28 HOH HOH . H 4 HOH A 99 599 149 HOH HOH . H 4 HOH A 100 600 76 HOH HOH . H 4 HOH A 101 601 18 HOH HOH . H 4 HOH A 102 602 12 HOH HOH . H 4 HOH A 103 603 36 HOH HOH . H 4 HOH A 104 604 73 HOH HOH . H 4 HOH A 105 605 115 HOH HOH . H 4 HOH A 106 606 283 HOH HOH . H 4 HOH A 107 607 284 HOH HOH . H 4 HOH A 108 608 27 HOH HOH . H 4 HOH A 109 609 6 HOH HOH . H 4 HOH A 110 610 58 HOH HOH . H 4 HOH A 111 611 274 HOH HOH . H 4 HOH A 112 612 15 HOH HOH . H 4 HOH A 113 613 26 HOH HOH . H 4 HOH A 114 614 142 HOH HOH . H 4 HOH A 115 615 302 HOH HOH . H 4 HOH A 116 616 30 HOH HOH . H 4 HOH A 117 617 81 HOH HOH . H 4 HOH A 118 618 129 HOH HOH . H 4 HOH A 119 619 5 HOH HOH . H 4 HOH A 120 620 272 HOH HOH . H 4 HOH A 121 621 190 HOH HOH . H 4 HOH A 122 622 55 HOH HOH . H 4 HOH A 123 623 159 HOH HOH . H 4 HOH A 124 624 88 HOH HOH . H 4 HOH A 125 625 123 HOH HOH . H 4 HOH A 126 626 94 HOH HOH . H 4 HOH A 127 627 2 HOH HOH . H 4 HOH A 128 628 80 HOH HOH . H 4 HOH A 129 629 112 HOH HOH . H 4 HOH A 130 630 177 HOH HOH . H 4 HOH A 131 631 268 HOH HOH . H 4 HOH A 132 632 241 HOH HOH . H 4 HOH A 133 633 137 HOH HOH . H 4 HOH A 134 634 122 HOH HOH . H 4 HOH A 135 635 82 HOH HOH . H 4 HOH A 136 636 75 HOH HOH . H 4 HOH A 137 637 244 HOH HOH . H 4 HOH A 138 638 61 HOH HOH . H 4 HOH A 139 639 93 HOH HOH . H 4 HOH A 140 640 56 HOH HOH . H 4 HOH A 141 641 147 HOH HOH . H 4 HOH A 142 642 295 HOH HOH . H 4 HOH A 143 643 289 HOH HOH . H 4 HOH A 144 644 207 HOH HOH . H 4 HOH A 145 645 162 HOH HOH . H 4 HOH A 146 646 193 HOH HOH . H 4 HOH A 147 647 231 HOH HOH . H 4 HOH A 148 648 78 HOH HOH . H 4 HOH A 149 649 109 HOH HOH . H 4 HOH A 150 650 144 HOH HOH . H 4 HOH A 151 651 282 HOH HOH . H 4 HOH A 152 652 86 HOH HOH . H 4 HOH A 153 653 232 HOH HOH . H 4 HOH A 154 654 97 HOH HOH . H 4 HOH A 155 655 7 HOH HOH . H 4 HOH A 156 656 32 HOH HOH . H 4 HOH A 157 657 72 HOH HOH . H 4 HOH A 158 658 216 HOH HOH . H 4 HOH A 159 659 54 HOH HOH . H 4 HOH A 160 660 104 HOH HOH . H 4 HOH A 161 661 257 HOH HOH . H 4 HOH A 162 662 133 HOH HOH . H 4 HOH A 163 663 275 HOH HOH . H 4 HOH A 164 664 77 HOH HOH . H 4 HOH A 165 665 13 HOH HOH . H 4 HOH A 166 666 89 HOH HOH . H 4 HOH A 167 667 218 HOH HOH . H 4 HOH A 168 668 279 HOH HOH . H 4 HOH A 169 669 195 HOH HOH . H 4 HOH A 170 670 151 HOH HOH . H 4 HOH A 171 671 243 HOH HOH . H 4 HOH A 172 672 92 HOH HOH . H 4 HOH A 173 673 163 HOH HOH . H 4 HOH A 174 674 280 HOH HOH . H 4 HOH A 175 675 164 HOH HOH . H 4 HOH A 176 676 16 HOH HOH . H 4 HOH A 177 677 45 HOH HOH . H 4 HOH A 178 678 98 HOH HOH . H 4 HOH A 179 679 201 HOH HOH . H 4 HOH A 180 680 48 HOH HOH . H 4 HOH A 181 681 212 HOH HOH . H 4 HOH A 182 682 215 HOH HOH . H 4 HOH A 183 683 191 HOH HOH . H 4 HOH A 184 684 111 HOH HOH . H 4 HOH A 185 685 51 HOH HOH . H 4 HOH A 186 686 235 HOH HOH . H 4 HOH A 187 687 49 HOH HOH . H 4 HOH A 188 688 8 HOH HOH . H 4 HOH A 189 689 105 HOH HOH . H 4 HOH A 190 690 23 HOH HOH . H 4 HOH A 191 691 91 HOH HOH . H 4 HOH A 192 692 154 HOH HOH . H 4 HOH A 193 693 130 HOH HOH . H 4 HOH A 194 694 305 HOH HOH . H 4 HOH A 195 695 299 HOH HOH . H 4 HOH A 196 696 254 HOH HOH . H 4 HOH A 197 697 183 HOH HOH . H 4 HOH A 198 698 260 HOH HOH . H 4 HOH A 199 699 125 HOH HOH . H 4 HOH A 200 700 217 HOH HOH . H 4 HOH A 201 701 229 HOH HOH . H 4 HOH A 202 702 114 HOH HOH . H 4 HOH A 203 703 22 HOH HOH . H 4 HOH A 204 704 202 HOH HOH . H 4 HOH A 205 705 237 HOH HOH . H 4 HOH A 206 706 259 HOH HOH . H 4 HOH A 207 707 181 HOH HOH . H 4 HOH A 208 708 233 HOH HOH . H 4 HOH A 209 709 227 HOH HOH . H 4 HOH A 210 710 270 HOH HOH . H 4 HOH A 211 711 47 HOH HOH . H 4 HOH A 212 712 116 HOH HOH . H 4 HOH A 213 713 166 HOH HOH . H 4 HOH A 214 714 269 HOH HOH . H 4 HOH A 215 715 266 HOH HOH . H 4 HOH A 216 716 196 HOH HOH . H 4 HOH A 217 717 230 HOH HOH . H 4 HOH A 218 718 194 HOH HOH . H 4 HOH A 219 719 291 HOH HOH . H 4 HOH A 220 720 184 HOH HOH . H 4 HOH A 221 721 245 HOH HOH . H 4 HOH A 222 722 158 HOH HOH . H 4 HOH A 223 723 180 HOH HOH . H 4 HOH A 224 724 292 HOH HOH . H 4 HOH A 225 725 238 HOH HOH . H 4 HOH A 226 726 214 HOH HOH . H 4 HOH A 227 727 221 HOH HOH . H 4 HOH A 228 728 209 HOH HOH . H 4 HOH A 229 729 131 HOH HOH . H 4 HOH A 230 730 223 HOH HOH . H 4 HOH A 231 731 145 HOH HOH . H 4 HOH A 232 732 178 HOH HOH . H 4 HOH A 233 733 103 HOH HOH . H 4 HOH A 234 734 189 HOH HOH . H 4 HOH A 235 735 71 HOH HOH . H 4 HOH A 236 736 251 HOH HOH . H 4 HOH A 237 737 153 HOH HOH . H 4 HOH A 238 738 132 HOH HOH . H 4 HOH A 239 739 165 HOH HOH . H 4 HOH A 240 740 258 HOH HOH . H 4 HOH A 241 741 176 HOH HOH . H 4 HOH A 242 742 46 HOH HOH . H 4 HOH A 243 743 255 HOH HOH . H 4 HOH A 244 744 182 HOH HOH . H 4 HOH A 245 745 87 HOH HOH . H 4 HOH A 246 746 186 HOH HOH . H 4 HOH A 247 747 113 HOH HOH . H 4 HOH A 248 748 187 HOH HOH . H 4 HOH A 249 749 140 HOH HOH . H 4 HOH A 250 750 213 HOH HOH . H 4 HOH A 251 751 287 HOH HOH . H 4 HOH A 252 752 296 HOH HOH . H 4 HOH A 253 753 139 HOH HOH . H 4 HOH A 254 754 38 HOH HOH . H 4 HOH A 255 755 192 HOH HOH . H 4 HOH A 256 756 303 HOH HOH . H 4 HOH A 257 757 310 HOH HOH . H 4 HOH A 258 758 67 HOH HOH . H 4 HOH A 259 759 228 HOH HOH . H 4 HOH A 260 760 220 HOH HOH . H 4 HOH A 261 761 281 HOH HOH . H 4 HOH A 262 762 224 HOH HOH . H 4 HOH A 263 763 286 HOH HOH . H 4 HOH A 264 764 294 HOH HOH . H 4 HOH A 265 765 250 HOH HOH . H 4 HOH A 266 766 188 HOH HOH . H 4 HOH A 267 767 248 HOH HOH . H 4 HOH A 268 768 168 HOH HOH . H 4 HOH A 269 769 306 HOH HOH . H 4 HOH A 270 770 95 HOH HOH . H 4 HOH A 271 771 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 6.054 -0.943 -6.501 1 42.92 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 2 6.828 -0.685 -7.7 1 43.26 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 2 7.231 -1.015 -5.209 1 42.99 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 2 5.601 -2.646 -6.56 1 42.89 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #