data_7GGT # _model_server_result.job_id 4q_ZM0U9EYa3xR_CGjg6Dw _model_server_result.datetime_utc '2025-01-28 02:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7GGT # _exptl.entry_id 7GGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.807 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-6-chloro-N-(5,6,7,8-tetrahydro-2,6-naphthyridin-4-yl)-3,4-dihydro-2H-1-benzopyran-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.74 _cell.angle_gamma 90 _cell.entry_id 7GGT _cell.length_a 113.905 _cell.length_b 53.664 _cell.length_c 44.055 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 Cl N3 O2' _chem_comp.formula_weight 343.807 _chem_comp.id P9O _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-6-chloro-N-(5,6,7,8-tetrahydro-2,6-naphthyridin-4-yl)-3,4-dihydro-2H-1-benzopyran-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C10 P9O doub 246 n y N1 C9 P9O sing 247 n y C10 C11 P9O sing 248 n y C9 C8 P9O doub 249 n y C11 C12 P9O sing 250 n n C11 C15 P9O doub 251 n y C12 C13 P9O sing 252 n n C8 C15 P9O sing 253 n y C8 N P9O sing 254 n n C15 C14 P9O sing 255 n n CL C P9O sing 256 n n N C7 P9O sing 257 n n C13 N2 P9O sing 258 n n O1 C7 P9O doub 259 n n C7 C6 P9O sing 260 n n C C17 P9O doub 261 n y C C1 P9O sing 262 n y C17 C16 P9O sing 263 n y C14 N2 P9O sing 264 n n C1 C2 P9O doub 265 n y C6 C16 P9O sing 266 n n C6 C5 P9O sing 267 n n C16 C3 P9O doub 268 n y C2 C3 P9O sing 269 n y C3 O P9O sing 270 n n C5 C4 P9O sing 271 n n C4 O P9O sing 272 n n C4 H1 P9O sing 273 n n C4 H2 P9O sing 274 n n C5 H3 P9O sing 275 n n C5 H4 P9O sing 276 n n C6 H5 P9O sing 277 n n C10 H6 P9O sing 278 n n C13 H7 P9O sing 279 n n C13 H8 P9O sing 280 n n C17 H9 P9O sing 281 n n C2 H10 P9O sing 282 n n C1 H11 P9O sing 283 n n N H12 P9O sing 284 n n C14 H13 P9O sing 285 n n C14 H14 P9O sing 286 n n N2 H15 P9O sing 287 n n C12 H17 P9O sing 288 n n C12 H18 P9O sing 289 n n C9 H19 P9O sing 290 n n # _atom_sites.entry_id 7GGT _atom_sites.fract_transf_matrix[1][1] 0.008779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 P9O A 1 404 1005 P9O LIG . F 2 DMS A 1 405 1006 DMS DMS . G 2 DMS A 1 406 1007 DMS DMS . H 4 HOH A 1 501 29 HOH HOH . H 4 HOH A 2 502 90 HOH HOH . H 4 HOH A 3 503 271 HOH HOH . H 4 HOH A 4 504 135 HOH HOH . H 4 HOH A 5 505 257 HOH HOH . H 4 HOH A 6 506 102 HOH HOH . H 4 HOH A 7 507 158 HOH HOH . H 4 HOH A 8 508 9 HOH HOH . H 4 HOH A 9 509 34 HOH HOH . H 4 HOH A 10 510 276 HOH HOH . H 4 HOH A 11 511 142 HOH HOH . H 4 HOH A 12 512 227 HOH HOH . H 4 HOH A 13 513 175 HOH HOH . H 4 HOH A 14 514 285 HOH HOH . H 4 HOH A 15 515 96 HOH HOH . H 4 HOH A 16 516 275 HOH HOH . H 4 HOH A 17 517 129 HOH HOH . H 4 HOH A 18 518 74 HOH HOH . H 4 HOH A 19 519 42 HOH HOH . H 4 HOH A 20 520 35 HOH HOH . H 4 HOH A 21 521 1 HOH HOH . H 4 HOH A 22 522 31 HOH HOH . H 4 HOH A 23 523 70 HOH HOH . H 4 HOH A 24 524 198 HOH HOH . H 4 HOH A 25 525 107 HOH HOH . H 4 HOH A 26 526 80 HOH HOH . H 4 HOH A 27 527 117 HOH HOH . H 4 HOH A 28 528 287 HOH HOH . H 4 HOH A 29 529 33 HOH HOH . H 4 HOH A 30 530 239 HOH HOH . H 4 HOH A 31 531 290 HOH HOH . H 4 HOH A 32 532 66 HOH HOH . H 4 HOH A 33 533 208 HOH HOH . H 4 HOH A 34 534 50 HOH HOH . H 4 HOH A 35 535 79 HOH HOH . H 4 HOH A 36 536 62 HOH HOH . H 4 HOH A 37 537 24 HOH HOH . H 4 HOH A 38 538 20 HOH HOH . H 4 HOH A 39 539 21 HOH HOH . H 4 HOH A 40 540 274 HOH HOH . H 4 HOH A 41 541 128 HOH HOH . H 4 HOH A 42 542 110 HOH HOH . H 4 HOH A 43 543 36 HOH HOH . H 4 HOH A 44 544 140 HOH HOH . H 4 HOH A 45 545 12 HOH HOH . H 4 HOH A 46 546 145 HOH HOH . H 4 HOH A 47 547 100 HOH HOH . H 4 HOH A 48 548 149 HOH HOH . H 4 HOH A 49 549 65 HOH HOH . H 4 HOH A 50 550 272 HOH HOH . H 4 HOH A 51 551 41 HOH HOH . H 4 HOH A 52 552 270 HOH HOH . H 4 HOH A 53 553 60 HOH HOH . H 4 HOH A 54 554 173 HOH HOH . H 4 HOH A 55 555 202 HOH HOH . H 4 HOH A 56 556 55 HOH HOH . H 4 HOH A 57 557 155 HOH HOH . H 4 HOH A 58 558 37 HOH HOH . H 4 HOH A 59 559 59 HOH HOH . H 4 HOH A 60 560 57 HOH HOH . H 4 HOH A 61 561 22 HOH HOH . H 4 HOH A 62 562 124 HOH HOH . H 4 HOH A 63 563 188 HOH HOH . H 4 HOH A 64 564 136 HOH HOH . H 4 HOH A 65 565 53 HOH HOH . H 4 HOH A 66 566 52 HOH HOH . H 4 HOH A 67 567 201 HOH HOH . H 4 HOH A 68 568 76 HOH HOH . H 4 HOH A 69 569 3 HOH HOH . H 4 HOH A 70 570 28 HOH HOH . H 4 HOH A 71 571 4 HOH HOH . H 4 HOH A 72 572 75 HOH HOH . H 4 HOH A 73 573 134 HOH HOH . H 4 HOH A 74 574 99 HOH HOH . H 4 HOH A 75 575 73 HOH HOH . H 4 HOH A 76 576 30 HOH HOH . H 4 HOH A 77 577 83 HOH HOH . H 4 HOH A 78 578 10 HOH HOH . H 4 HOH A 79 579 250 HOH HOH . H 4 HOH A 80 580 16 HOH HOH . H 4 HOH A 81 581 15 HOH HOH . H 4 HOH A 82 582 148 HOH HOH . H 4 HOH A 83 583 39 HOH HOH . H 4 HOH A 84 584 226 HOH HOH . H 4 HOH A 85 585 45 HOH HOH . H 4 HOH A 86 586 6 HOH HOH . H 4 HOH A 87 587 120 HOH HOH . H 4 HOH A 88 588 141 HOH HOH . H 4 HOH A 89 589 242 HOH HOH . H 4 HOH A 90 590 68 HOH HOH . H 4 HOH A 91 591 51 HOH HOH . H 4 HOH A 92 592 209 HOH HOH . H 4 HOH A 93 593 108 HOH HOH . H 4 HOH A 94 594 11 HOH HOH . H 4 HOH A 95 595 280 HOH HOH . H 4 HOH A 96 596 17 HOH HOH . H 4 HOH A 97 597 97 HOH HOH . H 4 HOH A 98 598 91 HOH HOH . H 4 HOH A 99 599 205 HOH HOH . H 4 HOH A 100 600 118 HOH HOH . H 4 HOH A 101 601 26 HOH HOH . H 4 HOH A 102 602 49 HOH HOH . H 4 HOH A 103 603 81 HOH HOH . H 4 HOH A 104 604 2 HOH HOH . H 4 HOH A 105 605 104 HOH HOH . H 4 HOH A 106 606 247 HOH HOH . H 4 HOH A 107 607 82 HOH HOH . H 4 HOH A 108 608 123 HOH HOH . H 4 HOH A 109 609 7 HOH HOH . H 4 HOH A 110 610 122 HOH HOH . H 4 HOH A 111 611 14 HOH HOH . H 4 HOH A 112 612 27 HOH HOH . H 4 HOH A 113 613 264 HOH HOH . H 4 HOH A 114 614 261 HOH HOH . H 4 HOH A 115 615 54 HOH HOH . H 4 HOH A 116 616 56 HOH HOH . H 4 HOH A 117 617 93 HOH HOH . H 4 HOH A 118 618 195 HOH HOH . H 4 HOH A 119 619 61 HOH HOH . H 4 HOH A 120 620 69 HOH HOH . H 4 HOH A 121 621 77 HOH HOH . H 4 HOH A 122 622 64 HOH HOH . H 4 HOH A 123 623 40 HOH HOH . H 4 HOH A 124 624 78 HOH HOH . H 4 HOH A 125 625 132 HOH HOH . H 4 HOH A 126 626 214 HOH HOH . H 4 HOH A 127 627 127 HOH HOH . H 4 HOH A 128 628 98 HOH HOH . H 4 HOH A 129 629 191 HOH HOH . H 4 HOH A 130 630 286 HOH HOH . H 4 HOH A 131 631 5 HOH HOH . H 4 HOH A 132 632 281 HOH HOH . H 4 HOH A 133 633 189 HOH HOH . H 4 HOH A 134 634 289 HOH HOH . H 4 HOH A 135 635 72 HOH HOH . H 4 HOH A 136 636 114 HOH HOH . H 4 HOH A 137 637 86 HOH HOH . H 4 HOH A 138 638 92 HOH HOH . H 4 HOH A 139 639 13 HOH HOH . H 4 HOH A 140 640 159 HOH HOH . H 4 HOH A 141 641 199 HOH HOH . H 4 HOH A 142 642 266 HOH HOH . H 4 HOH A 143 643 161 HOH HOH . H 4 HOH A 144 644 8 HOH HOH . H 4 HOH A 145 645 273 HOH HOH . H 4 HOH A 146 646 85 HOH HOH . H 4 HOH A 147 647 32 HOH HOH . H 4 HOH A 148 648 260 HOH HOH . H 4 HOH A 149 649 193 HOH HOH . H 4 HOH A 150 650 109 HOH HOH . H 4 HOH A 151 651 219 HOH HOH . H 4 HOH A 152 652 115 HOH HOH . H 4 HOH A 153 653 254 HOH HOH . H 4 HOH A 154 654 137 HOH HOH . H 4 HOH A 155 655 288 HOH HOH . H 4 HOH A 156 656 248 HOH HOH . H 4 HOH A 157 657 164 HOH HOH . H 4 HOH A 158 658 48 HOH HOH . H 4 HOH A 159 659 94 HOH HOH . H 4 HOH A 160 660 210 HOH HOH . H 4 HOH A 161 661 19 HOH HOH . H 4 HOH A 162 662 18 HOH HOH . H 4 HOH A 163 663 44 HOH HOH . H 4 HOH A 164 664 236 HOH HOH . H 4 HOH A 165 665 170 HOH HOH . H 4 HOH A 166 666 215 HOH HOH . H 4 HOH A 167 667 116 HOH HOH . H 4 HOH A 168 668 228 HOH HOH . H 4 HOH A 169 669 251 HOH HOH . H 4 HOH A 170 670 284 HOH HOH . H 4 HOH A 171 671 111 HOH HOH . H 4 HOH A 172 672 105 HOH HOH . H 4 HOH A 173 673 181 HOH HOH . H 4 HOH A 174 674 238 HOH HOH . H 4 HOH A 175 675 234 HOH HOH . H 4 HOH A 176 676 23 HOH HOH . H 4 HOH A 177 677 162 HOH HOH . H 4 HOH A 178 678 146 HOH HOH . H 4 HOH A 179 679 279 HOH HOH . H 4 HOH A 180 680 43 HOH HOH . H 4 HOH A 181 681 283 HOH HOH . H 4 HOH A 182 682 180 HOH HOH . H 4 HOH A 183 683 237 HOH HOH . H 4 HOH A 184 684 232 HOH HOH . H 4 HOH A 185 685 230 HOH HOH . H 4 HOH A 186 686 84 HOH HOH . H 4 HOH A 187 687 192 HOH HOH . H 4 HOH A 188 688 177 HOH HOH . H 4 HOH A 189 689 125 HOH HOH . H 4 HOH A 190 690 167 HOH HOH . H 4 HOH A 191 691 194 HOH HOH . H 4 HOH A 192 692 204 HOH HOH . H 4 HOH A 193 693 179 HOH HOH . H 4 HOH A 194 694 171 HOH HOH . H 4 HOH A 195 695 185 HOH HOH . H 4 HOH A 196 696 265 HOH HOH . H 4 HOH A 197 697 249 HOH HOH . H 4 HOH A 198 698 267 HOH HOH . H 4 HOH A 199 699 130 HOH HOH . H 4 HOH A 200 700 207 HOH HOH . H 4 HOH A 201 701 253 HOH HOH . H 4 HOH A 202 702 47 HOH HOH . H 4 HOH A 203 703 182 HOH HOH . H 4 HOH A 204 704 263 HOH HOH . H 4 HOH A 205 705 241 HOH HOH . H 4 HOH A 206 706 221 HOH HOH . H 4 HOH A 207 707 174 HOH HOH . H 4 HOH A 208 708 121 HOH HOH . H 4 HOH A 209 709 163 HOH HOH . H 4 HOH A 210 710 103 HOH HOH . H 4 HOH A 211 711 187 HOH HOH . H 4 HOH A 212 712 46 HOH HOH . H 4 HOH A 213 713 252 HOH HOH . H 4 HOH A 214 714 176 HOH HOH . H 4 HOH A 215 715 71 HOH HOH . H 4 HOH A 216 716 126 HOH HOH . H 4 HOH A 217 717 246 HOH HOH . H 4 HOH A 218 718 218 HOH HOH . H 4 HOH A 219 719 87 HOH HOH . H 4 HOH A 220 720 282 HOH HOH . H 4 HOH A 221 721 139 HOH HOH . H 4 HOH A 222 722 113 HOH HOH . H 4 HOH A 223 723 268 HOH HOH . H 4 HOH A 224 724 152 HOH HOH . H 4 HOH A 225 725 186 HOH HOH . H 4 HOH A 226 726 278 HOH HOH . H 4 HOH A 227 727 38 HOH HOH . H 4 HOH A 228 728 67 HOH HOH . H 4 HOH A 229 729 245 HOH HOH . H 4 HOH A 230 730 277 HOH HOH . H 4 HOH A 231 731 243 HOH HOH . H 4 HOH A 232 732 95 HOH HOH . H 4 HOH A 233 733 183 HOH HOH . H 4 HOH A 234 734 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 P9O . . . E 3 7.369 0.339 17.542 0.98 27.49 ? N1 P9O 404 A 1 HETATM 2 C C4 P9O . . . E 3 10.496 1.291 24.206 0.98 31.81 ? C4 P9O 404 A 1 HETATM 3 C C5 P9O . . . E 3 9.695 0.078 23.811 0.98 31.04 ? C5 P9O 404 A 1 HETATM 4 C C6 P9O . . . E 3 10.317 -0.588 22.576 0.98 30.07 ? C6 P9O 404 A 1 HETATM 5 C C7 P9O . . . E 3 9.843 0.159 21.328 0.98 28.77 ? C7 P9O 404 A 1 HETATM 6 C C8 P9O . . . E 3 7.732 0.048 19.9 0.98 28.05 ? C8 P9O 404 A 1 HETATM 7 C C10 P9O . . . E 3 6.287 1.064 17.831 0.98 28.11 ? C10 P9O 404 A 1 HETATM 8 C C13 P9O . . . E 3 4.121 2.01 20.775 0.98 28.45 ? C13 P9O 404 A 1 HETATM 9 C C15 P9O . . . E 3 6.616 0.85 20.184 0.98 27.95 ? C15 P9O 404 A 1 HETATM 10 C C17 P9O . . . E 3 12.591 -1.199 21.614 0.98 29.16 ? C17 P9O 404 A 1 HETATM 11 O O1 P9O . . . E 3 10.419 1.156 20.897 0.98 28.35 ? O1 P9O 404 A 1 HETATM 12 O O P9O . . . E 3 11.856 0.93 24.519 0.98 31.95 ? O P9O 404 A 1 HETATM 13 C C16 P9O . . . E 3 11.833 -0.531 22.577 0.98 30.28 ? C16 P9O 404 A 1 HETATM 14 C C3 P9O . . . E 3 12.504 0.26 23.512 0.98 30.76 ? C3 P9O 404 A 1 HETATM 15 C C2 P9O . . . E 3 13.88 0.419 23.47 0.98 30.21 ? C2 P9O 404 A 1 HETATM 16 C C1 P9O . . . E 3 14.609 -0.214 22.48 0.98 29.57 ? C1 P9O 404 A 1 HETATM 17 C C P9O . . . E 3 13.959 -1.026 21.58 0.98 28.88 ? C P9O 404 A 1 HETATM 18 CL CL P9O . . . E 3 14.887 -1.872 20.373 0.98 28.63 ? CL P9O 404 A 1 HETATM 19 N N P9O . . . E 3 8.781 -0.378 20.723 0.98 28.27 ? N P9O 404 A 1 HETATM 20 C C14 P9O . . . E 3 6.233 1.137 21.614 0.98 28.16 ? C14 P9O 404 A 1 HETATM 21 N N2 P9O . . . E 3 5.216 2.185 21.744 0.98 28.31 ? N2 P9O 404 A 1 HETATM 22 C C12 P9O . . . E 3 4.614 2.169 19.355 0.98 28.28 ? C12 P9O 404 A 1 HETATM 23 C C11 P9O . . . E 3 5.858 1.347 19.113 0.98 28.23 ? C11 P9O 404 A 1 HETATM 24 C C9 P9O . . . E 3 8.058 -0.168 18.563 0.98 27.63 ? C9 P9O 404 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #