data_7GGY # _model_server_result.job_id M37LDGI8JWGn2TWfnAe5uQ _model_server_result.datetime_utc '2024-11-21 09:08:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ggy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7GGY # _exptl.entry_id 7GGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.6 _cell.angle_gamma 90 _cell.entry_id 7GGY _cell.length_a 113.86 _cell.length_b 53.31 _cell.length_c 44.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GGY _atom_sites.fract_transf_matrix[1][1] 0.008783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 PUU A 1 404 1005 PUU LIG . F 2 DMS A 1 405 1006 DMS DMS . G 4 HOH A 1 501 29 HOH HOH . G 4 HOH A 2 502 9 HOH HOH . G 4 HOH A 3 503 34 HOH HOH . G 4 HOH A 4 504 35 HOH HOH . G 4 HOH A 5 505 4 HOH HOH . G 4 HOH A 6 506 271 HOH HOH . G 4 HOH A 7 507 12 HOH HOH . G 4 HOH A 8 508 59 HOH HOH . G 4 HOH A 9 509 247 HOH HOH . G 4 HOH A 10 510 41 HOH HOH . G 4 HOH A 11 511 31 HOH HOH . G 4 HOH A 12 512 60 HOH HOH . G 4 HOH A 13 513 117 HOH HOH . G 4 HOH A 14 514 37 HOH HOH . G 4 HOH A 15 515 108 HOH HOH . G 4 HOH A 16 516 40 HOH HOH . G 4 HOH A 17 517 208 HOH HOH . G 4 HOH A 18 518 80 HOH HOH . G 4 HOH A 19 519 74 HOH HOH . G 4 HOH A 20 520 96 HOH HOH . G 4 HOH A 21 521 135 HOH HOH . G 4 HOH A 22 522 89 HOH HOH . G 4 HOH A 23 523 21 HOH HOH . G 4 HOH A 24 524 102 HOH HOH . G 4 HOH A 25 525 1 HOH HOH . G 4 HOH A 26 526 76 HOH HOH . G 4 HOH A 27 527 10 HOH HOH . G 4 HOH A 28 528 99 HOH HOH . G 4 HOH A 29 529 173 HOH HOH . G 4 HOH A 30 530 26 HOH HOH . G 4 HOH A 31 531 62 HOH HOH . G 4 HOH A 32 532 227 HOH HOH . G 4 HOH A 33 533 155 HOH HOH . G 4 HOH A 34 534 6 HOH HOH . G 4 HOH A 35 535 3 HOH HOH . G 4 HOH A 36 536 20 HOH HOH . G 4 HOH A 37 537 14 HOH HOH . G 4 HOH A 38 538 141 HOH HOH . G 4 HOH A 39 539 64 HOH HOH . G 4 HOH A 40 540 270 HOH HOH . G 4 HOH A 41 541 18 HOH HOH . G 4 HOH A 42 542 75 HOH HOH . G 4 HOH A 43 543 17 HOH HOH . G 4 HOH A 44 544 27 HOH HOH . G 4 HOH A 45 545 73 HOH HOH . G 4 HOH A 46 546 239 HOH HOH . G 4 HOH A 47 547 39 HOH HOH . G 4 HOH A 48 548 28 HOH HOH . G 4 HOH A 49 549 50 HOH HOH . G 4 HOH A 50 550 24 HOH HOH . G 4 HOH A 51 551 116 HOH HOH . G 4 HOH A 52 552 86 HOH HOH . G 4 HOH A 53 553 251 HOH HOH . G 4 HOH A 54 554 52 HOH HOH . G 4 HOH A 55 555 5 HOH HOH . G 4 HOH A 56 556 15 HOH HOH . G 4 HOH A 57 557 100 HOH HOH . G 4 HOH A 58 558 77 HOH HOH . G 4 HOH A 59 559 85 HOH HOH . G 4 HOH A 60 560 175 HOH HOH . G 4 HOH A 61 561 124 HOH HOH . G 4 HOH A 62 562 13 HOH HOH . G 4 HOH A 63 563 53 HOH HOH . G 4 HOH A 64 564 55 HOH HOH . G 4 HOH A 65 565 11 HOH HOH . G 4 HOH A 66 566 36 HOH HOH . G 4 HOH A 67 567 168 HOH HOH . G 4 HOH A 68 568 82 HOH HOH . G 4 HOH A 69 569 19 HOH HOH . G 4 HOH A 70 570 248 HOH HOH . G 4 HOH A 71 571 32 HOH HOH . G 4 HOH A 72 572 118 HOH HOH . G 4 HOH A 73 573 44 HOH HOH . G 4 HOH A 74 574 98 HOH HOH . G 4 HOH A 75 575 260 HOH HOH . G 4 HOH A 76 576 2 HOH HOH . G 4 HOH A 77 577 161 HOH HOH . G 4 HOH A 78 578 238 HOH HOH . G 4 HOH A 79 579 269 HOH HOH . G 4 HOH A 80 580 127 HOH HOH . G 4 HOH A 81 581 104 HOH HOH . G 4 HOH A 82 582 7 HOH HOH . G 4 HOH A 83 583 83 HOH HOH . G 4 HOH A 84 584 93 HOH HOH . G 4 HOH A 85 585 56 HOH HOH . G 4 HOH A 86 586 45 HOH HOH . G 4 HOH A 87 587 78 HOH HOH . G 4 HOH A 88 588 120 HOH HOH . G 4 HOH A 89 589 132 HOH HOH . G 4 HOH A 90 590 68 HOH HOH . G 4 HOH A 91 591 162 HOH HOH . G 4 HOH A 92 592 148 HOH HOH . G 4 HOH A 93 593 94 HOH HOH . G 4 HOH A 94 594 229 HOH HOH . G 4 HOH A 95 595 61 HOH HOH . G 4 HOH A 96 596 159 HOH HOH . G 4 HOH A 97 597 210 HOH HOH . G 4 HOH A 98 598 189 HOH HOH . G 4 HOH A 99 599 22 HOH HOH . G 4 HOH A 100 600 136 HOH HOH . G 4 HOH A 101 601 263 HOH HOH . G 4 HOH A 102 602 54 HOH HOH . G 4 HOH A 103 603 105 HOH HOH . G 4 HOH A 104 604 181 HOH HOH . G 4 HOH A 105 605 130 HOH HOH . G 4 HOH A 106 606 92 HOH HOH . G 4 HOH A 107 607 232 HOH HOH . G 4 HOH A 108 608 23 HOH HOH . G 4 HOH A 109 609 57 HOH HOH . G 4 HOH A 110 610 204 HOH HOH . G 4 HOH A 111 611 266 HOH HOH . G 4 HOH A 112 612 191 HOH HOH . G 4 HOH A 113 613 8 HOH HOH . G 4 HOH A 114 614 48 HOH HOH . G 4 HOH A 115 615 197 HOH HOH . G 4 HOH A 116 616 16 HOH HOH . G 4 HOH A 117 617 199 HOH HOH . G 4 HOH A 118 618 133 HOH HOH . G 4 HOH A 119 619 49 HOH HOH . G 4 HOH A 120 620 236 HOH HOH . G 4 HOH A 121 621 84 HOH HOH . G 4 HOH A 122 622 213 HOH HOH . G 4 HOH A 123 623 194 HOH HOH . G 4 HOH A 124 624 153 HOH HOH . G 4 HOH A 125 625 265 HOH HOH . G 4 HOH A 126 626 230 HOH HOH . G 4 HOH A 127 627 179 HOH HOH . G 4 HOH A 128 628 150 HOH HOH . G 4 HOH A 129 629 250 HOH HOH . G 4 HOH A 130 630 114 HOH HOH . G 4 HOH A 131 631 125 HOH HOH . G 4 HOH A 132 632 252 HOH HOH . G 4 HOH A 133 633 47 HOH HOH . G 4 HOH A 134 634 219 HOH HOH . G 4 HOH A 135 635 182 HOH HOH . G 4 HOH A 136 636 207 HOH HOH . G 4 HOH A 137 637 71 HOH HOH . G 4 HOH A 138 638 241 HOH HOH . G 4 HOH A 139 639 264 HOH HOH . G 4 HOH A 140 640 103 HOH HOH . G 4 HOH A 141 641 268 HOH HOH . G 4 HOH A 142 642 138 HOH HOH . G 4 HOH A 143 643 46 HOH HOH . G 4 HOH A 144 644 87 HOH HOH . G 4 HOH A 145 645 267 HOH HOH . G 4 HOH A 146 646 113 HOH HOH . G 4 HOH A 147 647 67 HOH HOH . G 4 HOH A 148 648 243 HOH HOH . G 4 HOH A 149 649 166 HOH HOH . G 4 HOH A 150 650 38 HOH HOH . G 4 HOH A 151 651 95 HOH HOH . G 4 HOH A 152 652 180 HOH HOH . G 4 HOH A 153 653 218 HOH HOH . G 4 HOH A 154 654 233 HOH HOH . G 4 HOH A 155 655 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 2.623 -18.48 8.253 1 57.82 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 2 3.61 -19.463 8.828 1 57.93 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 2 1.223 -18.407 9.405 1 57.51 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 2 1.707 -19.284 6.902 1 57.85 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #