data_7GHD # _model_server_result.job_id QMRE5EtEPic0FDOkn9C2kQ _model_server_result.datetime_utc '2024-11-21 08:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ghd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 7GHD # _exptl.entry_id 7GHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.35 _cell.angle_gamma 90 _cell.entry_id 7GHD _cell.length_a 112.55 _cell.length_b 53.06 _cell.length_c 45.338 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GHD _atom_sites.fract_transf_matrix[1][1] 0.008885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001945 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q5K A 1 1001 1001 Q5K LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 4 CL A 1 1006 1 CL CL . H 5 HOH A 1 1101 141 HOH HOH . H 5 HOH A 2 1102 36 HOH HOH . H 5 HOH A 3 1103 7 HOH HOH . H 5 HOH A 4 1104 56 HOH HOH . H 5 HOH A 5 1105 23 HOH HOH . H 5 HOH A 6 1106 96 HOH HOH . H 5 HOH A 7 1107 50 HOH HOH . H 5 HOH A 8 1108 8 HOH HOH . H 5 HOH A 9 1109 1 HOH HOH . H 5 HOH A 10 1110 88 HOH HOH . H 5 HOH A 11 1111 90 HOH HOH . H 5 HOH A 12 1112 91 HOH HOH . H 5 HOH A 13 1113 113 HOH HOH . H 5 HOH A 14 1114 75 HOH HOH . H 5 HOH A 15 1115 15 HOH HOH . H 5 HOH A 16 1116 38 HOH HOH . H 5 HOH A 17 1117 5 HOH HOH . H 5 HOH A 18 1118 55 HOH HOH . H 5 HOH A 19 1119 136 HOH HOH . H 5 HOH A 20 1120 143 HOH HOH . H 5 HOH A 21 1121 80 HOH HOH . H 5 HOH A 22 1122 72 HOH HOH . H 5 HOH A 23 1123 19 HOH HOH . H 5 HOH A 24 1124 102 HOH HOH . H 5 HOH A 25 1125 21 HOH HOH . H 5 HOH A 26 1126 40 HOH HOH . H 5 HOH A 27 1127 70 HOH HOH . H 5 HOH A 28 1128 47 HOH HOH . H 5 HOH A 29 1129 52 HOH HOH . H 5 HOH A 30 1130 26 HOH HOH . H 5 HOH A 31 1131 18 HOH HOH . H 5 HOH A 32 1132 120 HOH HOH . H 5 HOH A 33 1133 33 HOH HOH . H 5 HOH A 34 1134 60 HOH HOH . H 5 HOH A 35 1135 32 HOH HOH . H 5 HOH A 36 1136 34 HOH HOH . H 5 HOH A 37 1137 135 HOH HOH . H 5 HOH A 38 1138 25 HOH HOH . H 5 HOH A 39 1139 130 HOH HOH . H 5 HOH A 40 1140 126 HOH HOH . H 5 HOH A 41 1141 27 HOH HOH . H 5 HOH A 42 1142 9 HOH HOH . H 5 HOH A 43 1143 17 HOH HOH . H 5 HOH A 44 1144 69 HOH HOH . H 5 HOH A 45 1145 49 HOH HOH . H 5 HOH A 46 1146 4 HOH HOH . H 5 HOH A 47 1147 123 HOH HOH . H 5 HOH A 48 1148 30 HOH HOH . H 5 HOH A 49 1149 14 HOH HOH . H 5 HOH A 50 1150 82 HOH HOH . H 5 HOH A 51 1151 68 HOH HOH . H 5 HOH A 52 1152 24 HOH HOH . H 5 HOH A 53 1153 11 HOH HOH . H 5 HOH A 54 1154 3 HOH HOH . H 5 HOH A 55 1155 16 HOH HOH . H 5 HOH A 56 1156 81 HOH HOH . H 5 HOH A 57 1157 44 HOH HOH . H 5 HOH A 58 1158 124 HOH HOH . H 5 HOH A 59 1159 58 HOH HOH . H 5 HOH A 60 1160 45 HOH HOH . H 5 HOH A 61 1161 37 HOH HOH . H 5 HOH A 62 1162 110 HOH HOH . H 5 HOH A 63 1163 73 HOH HOH . H 5 HOH A 64 1164 106 HOH HOH . H 5 HOH A 65 1165 66 HOH HOH . H 5 HOH A 66 1166 144 HOH HOH . H 5 HOH A 67 1167 42 HOH HOH . H 5 HOH A 68 1168 20 HOH HOH . H 5 HOH A 69 1169 64 HOH HOH . H 5 HOH A 70 1170 103 HOH HOH . H 5 HOH A 71 1171 108 HOH HOH . H 5 HOH A 72 1172 128 HOH HOH . H 5 HOH A 73 1173 6 HOH HOH . H 5 HOH A 74 1174 2 HOH HOH . H 5 HOH A 75 1175 53 HOH HOH . H 5 HOH A 76 1176 13 HOH HOH . H 5 HOH A 77 1177 59 HOH HOH . H 5 HOH A 78 1178 89 HOH HOH . H 5 HOH A 79 1179 142 HOH HOH . H 5 HOH A 80 1180 39 HOH HOH . H 5 HOH A 81 1181 140 HOH HOH . H 5 HOH A 82 1182 98 HOH HOH . H 5 HOH A 83 1183 54 HOH HOH . H 5 HOH A 84 1184 43 HOH HOH . H 5 HOH A 85 1185 31 HOH HOH . H 5 HOH A 86 1186 12 HOH HOH . H 5 HOH A 87 1187 92 HOH HOH . H 5 HOH A 88 1188 10 HOH HOH . H 5 HOH A 89 1189 100 HOH HOH . H 5 HOH A 90 1190 51 HOH HOH . H 5 HOH A 91 1191 125 HOH HOH . H 5 HOH A 92 1192 46 HOH HOH . H 5 HOH A 93 1193 63 HOH HOH . H 5 HOH A 94 1194 35 HOH HOH . H 5 HOH A 95 1195 41 HOH HOH . H 5 HOH A 96 1196 76 HOH HOH . H 5 HOH A 97 1197 132 HOH HOH . H 5 HOH A 98 1198 114 HOH HOH . H 5 HOH A 99 1199 138 HOH HOH . H 5 HOH A 100 1200 119 HOH HOH . H 5 HOH A 101 1201 104 HOH HOH . H 5 HOH A 102 1202 29 HOH HOH . H 5 HOH A 103 1203 22 HOH HOH . H 5 HOH A 104 1204 127 HOH HOH . H 5 HOH A 105 1205 62 HOH HOH . H 5 HOH A 106 1206 129 HOH HOH . H 5 HOH A 107 1207 84 HOH HOH . H 5 HOH A 108 1208 71 HOH HOH . H 5 HOH A 109 1209 133 HOH HOH . H 5 HOH A 110 1210 117 HOH HOH . H 5 HOH A 111 1211 67 HOH HOH . H 5 HOH A 112 1212 107 HOH HOH . H 5 HOH A 113 1213 77 HOH HOH . H 5 HOH A 114 1214 86 HOH HOH . H 5 HOH A 115 1215 122 HOH HOH . H 5 HOH A 116 1216 83 HOH HOH . H 5 HOH A 117 1217 97 HOH HOH . H 5 HOH A 118 1218 93 HOH HOH . H 5 HOH A 119 1219 65 HOH HOH . H 5 HOH A 120 1220 121 HOH HOH . H 5 HOH A 121 1221 115 HOH HOH . H 5 HOH A 122 1222 111 HOH HOH . H 5 HOH A 123 1223 79 HOH HOH . H 5 HOH A 124 1224 134 HOH HOH . H 5 HOH A 125 1225 112 HOH HOH . H 5 HOH A 126 1226 94 HOH HOH . H 5 HOH A 127 1227 139 HOH HOH . H 5 HOH A 128 1228 95 HOH HOH . H 5 HOH A 129 1229 74 HOH HOH . H 5 HOH A 130 1230 131 HOH HOH . H 5 HOH A 131 1231 99 HOH HOH . H 5 HOH A 132 1232 137 HOH HOH . H 5 HOH A 133 1233 118 HOH HOH . H 5 HOH A 134 1234 85 HOH HOH . H 5 HOH A 135 1235 105 HOH HOH . H 5 HOH A 136 1236 48 HOH HOH . H 5 HOH A 137 1237 109 HOH HOH . H 5 HOH A 138 1238 87 HOH HOH . H 5 HOH A 139 1239 116 HOH HOH . H 5 HOH A 140 1240 78 HOH HOH . H 5 HOH A 141 1241 57 HOH HOH . H 5 HOH A 142 1242 61 HOH HOH . H 5 HOH A 143 1243 28 HOH HOH . H 5 HOH A 144 1244 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 2.048 -19.026 8.49 1 84.85 ? S DMS 1004 A 1 HETATM 2 O O DMS . . . E 3 3.408 -18.654 8.879 1 84.79 ? O DMS 1004 A 1 HETATM 3 C C1 DMS . . . E 3 0.992 -17.91 9.369 1 84.72 ? C1 DMS 1004 A 1 HETATM 4 C C2 DMS . . . E 3 1.719 -20.468 9.475 1 85.01 ? C2 DMS 1004 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #