data_7GHF # _model_server_result.job_id D8zEYKQUg6_6ZXwnqJnAqA _model_server_result.datetime_utc '2024-11-21 09:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ghf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 7GHF # _exptl.entry_id 7GHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.34 _cell.angle_gamma 90 _cell.entry_id 7GHF _cell.length_a 113.701 _cell.length_b 53.401 _cell.length_c 44.392 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GHF _atom_sites.fract_transf_matrix[1][1] 0.008795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q60 A 1 1001 1001 Q60 LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 3 DMS A 1 1006 1101 DMS DMS . H 4 HOH A 1 1101 172 HOH HOH . H 4 HOH A 2 1102 202 HOH HOH . H 4 HOH A 3 1103 309 HOH HOH . H 4 HOH A 4 1104 282 HOH HOH . H 4 HOH A 5 1105 34 HOH HOH . H 4 HOH A 6 1106 275 HOH HOH . H 4 HOH A 7 1107 182 HOH HOH . H 4 HOH A 8 1108 293 HOH HOH . H 4 HOH A 9 1109 93 HOH HOH . H 4 HOH A 10 1110 1 HOH HOH . H 4 HOH A 11 1111 262 HOH HOH . H 4 HOH A 12 1112 28 HOH HOH . H 4 HOH A 13 1113 102 HOH HOH . H 4 HOH A 14 1114 9 HOH HOH . H 4 HOH A 15 1115 290 HOH HOH . H 4 HOH A 16 1116 77 HOH HOH . H 4 HOH A 17 1117 98 HOH HOH . H 4 HOH A 18 1118 143 HOH HOH . H 4 HOH A 19 1119 88 HOH HOH . H 4 HOH A 20 1120 281 HOH HOH . H 4 HOH A 21 1121 148 HOH HOH . H 4 HOH A 22 1122 246 HOH HOH . H 4 HOH A 23 1123 303 HOH HOH . H 4 HOH A 24 1124 215 HOH HOH . H 4 HOH A 25 1125 203 HOH HOH . H 4 HOH A 26 1126 33 HOH HOH . H 4 HOH A 27 1127 103 HOH HOH . H 4 HOH A 28 1128 64 HOH HOH . H 4 HOH A 29 1129 59 HOH HOH . H 4 HOH A 30 1130 30 HOH HOH . H 4 HOH A 31 1131 194 HOH HOH . H 4 HOH A 32 1132 97 HOH HOH . H 4 HOH A 33 1133 36 HOH HOH . H 4 HOH A 34 1134 132 HOH HOH . H 4 HOH A 35 1135 150 HOH HOH . H 4 HOH A 36 1136 72 HOH HOH . H 4 HOH A 37 1137 245 HOH HOH . H 4 HOH A 38 1138 280 HOH HOH . H 4 HOH A 39 1139 295 HOH HOH . H 4 HOH A 40 1140 219 HOH HOH . H 4 HOH A 41 1141 20 HOH HOH . H 4 HOH A 42 1142 10 HOH HOH . H 4 HOH A 43 1143 236 HOH HOH . H 4 HOH A 44 1144 84 HOH HOH . H 4 HOH A 45 1145 313 HOH HOH . H 4 HOH A 46 1146 169 HOH HOH . H 4 HOH A 47 1147 205 HOH HOH . H 4 HOH A 48 1148 107 HOH HOH . H 4 HOH A 49 1149 96 HOH HOH . H 4 HOH A 50 1150 68 HOH HOH . H 4 HOH A 51 1151 81 HOH HOH . H 4 HOH A 52 1152 140 HOH HOH . H 4 HOH A 53 1153 32 HOH HOH . H 4 HOH A 54 1154 43 HOH HOH . H 4 HOH A 55 1155 106 HOH HOH . H 4 HOH A 56 1156 166 HOH HOH . H 4 HOH A 57 1157 134 HOH HOH . H 4 HOH A 58 1158 230 HOH HOH . H 4 HOH A 59 1159 144 HOH HOH . H 4 HOH A 60 1160 127 HOH HOH . H 4 HOH A 61 1161 235 HOH HOH . H 4 HOH A 62 1162 24 HOH HOH . H 4 HOH A 63 1163 164 HOH HOH . H 4 HOH A 64 1164 49 HOH HOH . H 4 HOH A 65 1165 41 HOH HOH . H 4 HOH A 66 1166 62 HOH HOH . H 4 HOH A 67 1167 67 HOH HOH . H 4 HOH A 68 1168 12 HOH HOH . H 4 HOH A 69 1169 21 HOH HOH . H 4 HOH A 70 1170 121 HOH HOH . H 4 HOH A 71 1171 61 HOH HOH . H 4 HOH A 72 1172 89 HOH HOH . H 4 HOH A 73 1173 278 HOH HOH . H 4 HOH A 74 1174 4 HOH HOH . H 4 HOH A 75 1175 35 HOH HOH . H 4 HOH A 76 1176 208 HOH HOH . H 4 HOH A 77 1177 40 HOH HOH . H 4 HOH A 78 1178 128 HOH HOH . H 4 HOH A 79 1179 310 HOH HOH . H 4 HOH A 80 1180 251 HOH HOH . H 4 HOH A 81 1181 109 HOH HOH . H 4 HOH A 82 1182 57 HOH HOH . H 4 HOH A 83 1183 52 HOH HOH . H 4 HOH A 84 1184 29 HOH HOH . H 4 HOH A 85 1185 201 HOH HOH . H 4 HOH A 86 1186 142 HOH HOH . H 4 HOH A 87 1187 300 HOH HOH . H 4 HOH A 88 1188 51 HOH HOH . H 4 HOH A 89 1189 3 HOH HOH . H 4 HOH A 90 1190 78 HOH HOH . H 4 HOH A 91 1191 276 HOH HOH . H 4 HOH A 92 1192 17 HOH HOH . H 4 HOH A 93 1193 113 HOH HOH . H 4 HOH A 94 1194 131 HOH HOH . H 4 HOH A 95 1195 11 HOH HOH . H 4 HOH A 96 1196 58 HOH HOH . H 4 HOH A 97 1197 74 HOH HOH . H 4 HOH A 98 1198 115 HOH HOH . H 4 HOH A 99 1199 273 HOH HOH . H 4 HOH A 100 1200 228 HOH HOH . H 4 HOH A 101 1201 141 HOH HOH . H 4 HOH A 102 1202 63 HOH HOH . H 4 HOH A 103 1203 137 HOH HOH . H 4 HOH A 104 1204 197 HOH HOH . H 4 HOH A 105 1205 289 HOH HOH . H 4 HOH A 106 1206 229 HOH HOH . H 4 HOH A 107 1207 170 HOH HOH . H 4 HOH A 108 1208 294 HOH HOH . H 4 HOH A 109 1209 291 HOH HOH . H 4 HOH A 110 1210 212 HOH HOH . H 4 HOH A 111 1211 79 HOH HOH . H 4 HOH A 112 1212 71 HOH HOH . H 4 HOH A 113 1213 83 HOH HOH . H 4 HOH A 114 1214 180 HOH HOH . H 4 HOH A 115 1215 26 HOH HOH . H 4 HOH A 116 1216 16 HOH HOH . H 4 HOH A 117 1217 206 HOH HOH . H 4 HOH A 118 1218 122 HOH HOH . H 4 HOH A 119 1219 73 HOH HOH . H 4 HOH A 120 1220 6 HOH HOH . H 4 HOH A 121 1221 15 HOH HOH . H 4 HOH A 122 1222 117 HOH HOH . H 4 HOH A 123 1223 39 HOH HOH . H 4 HOH A 124 1224 214 HOH HOH . H 4 HOH A 125 1225 307 HOH HOH . H 4 HOH A 126 1226 263 HOH HOH . H 4 HOH A 127 1227 114 HOH HOH . H 4 HOH A 128 1228 184 HOH HOH . H 4 HOH A 129 1229 252 HOH HOH . H 4 HOH A 130 1230 126 HOH HOH . H 4 HOH A 131 1231 27 HOH HOH . H 4 HOH A 132 1232 38 HOH HOH . H 4 HOH A 133 1233 135 HOH HOH . H 4 HOH A 134 1234 75 HOH HOH . H 4 HOH A 135 1235 308 HOH HOH . H 4 HOH A 136 1236 5 HOH HOH . H 4 HOH A 137 1237 259 HOH HOH . H 4 HOH A 138 1238 48 HOH HOH . H 4 HOH A 139 1239 55 HOH HOH . H 4 HOH A 140 1240 25 HOH HOH . H 4 HOH A 141 1241 18 HOH HOH . H 4 HOH A 142 1242 44 HOH HOH . H 4 HOH A 143 1243 86 HOH HOH . H 4 HOH A 144 1244 70 HOH HOH . H 4 HOH A 145 1245 118 HOH HOH . H 4 HOH A 146 1246 213 HOH HOH . H 4 HOH A 147 1247 218 HOH HOH . H 4 HOH A 148 1248 54 HOH HOH . H 4 HOH A 149 1249 227 HOH HOH . H 4 HOH A 150 1250 2 HOH HOH . H 4 HOH A 151 1251 306 HOH HOH . H 4 HOH A 152 1252 104 HOH HOH . H 4 HOH A 153 1253 183 HOH HOH . H 4 HOH A 154 1254 60 HOH HOH . H 4 HOH A 155 1255 167 HOH HOH . H 4 HOH A 156 1256 250 HOH HOH . H 4 HOH A 157 1257 195 HOH HOH . H 4 HOH A 158 1258 56 HOH HOH . H 4 HOH A 159 1259 50 HOH HOH . H 4 HOH A 160 1260 14 HOH HOH . H 4 HOH A 161 1261 249 HOH HOH . H 4 HOH A 162 1262 160 HOH HOH . H 4 HOH A 163 1263 133 HOH HOH . H 4 HOH A 164 1264 94 HOH HOH . H 4 HOH A 165 1265 305 HOH HOH . H 4 HOH A 166 1266 145 HOH HOH . H 4 HOH A 167 1267 76 HOH HOH . H 4 HOH A 168 1268 90 HOH HOH . H 4 HOH A 169 1269 279 HOH HOH . H 4 HOH A 170 1270 136 HOH HOH . H 4 HOH A 171 1271 312 HOH HOH . H 4 HOH A 172 1272 244 HOH HOH . H 4 HOH A 173 1273 311 HOH HOH . H 4 HOH A 174 1274 19 HOH HOH . H 4 HOH A 175 1275 82 HOH HOH . H 4 HOH A 176 1276 7 HOH HOH . H 4 HOH A 177 1277 80 HOH HOH . H 4 HOH A 178 1278 66 HOH HOH . H 4 HOH A 179 1279 165 HOH HOH . H 4 HOH A 180 1280 53 HOH HOH . H 4 HOH A 181 1281 196 HOH HOH . H 4 HOH A 182 1282 163 HOH HOH . H 4 HOH A 183 1283 42 HOH HOH . H 4 HOH A 184 1284 297 HOH HOH . H 4 HOH A 185 1285 216 HOH HOH . H 4 HOH A 186 1286 125 HOH HOH . H 4 HOH A 187 1287 301 HOH HOH . H 4 HOH A 188 1288 187 HOH HOH . H 4 HOH A 189 1289 272 HOH HOH . H 4 HOH A 190 1290 8 HOH HOH . H 4 HOH A 191 1291 139 HOH HOH . H 4 HOH A 192 1292 234 HOH HOH . H 4 HOH A 193 1293 100 HOH HOH . H 4 HOH A 194 1294 292 HOH HOH . H 4 HOH A 195 1295 91 HOH HOH . H 4 HOH A 196 1296 260 HOH HOH . H 4 HOH A 197 1297 237 HOH HOH . H 4 HOH A 198 1298 13 HOH HOH . H 4 HOH A 199 1299 161 HOH HOH . H 4 HOH A 200 1300 287 HOH HOH . H 4 HOH A 201 1301 171 HOH HOH . H 4 HOH A 202 1302 267 HOH HOH . H 4 HOH A 203 1303 47 HOH HOH . H 4 HOH A 204 1304 87 HOH HOH . H 4 HOH A 205 1305 31 HOH HOH . H 4 HOH A 206 1306 95 HOH HOH . H 4 HOH A 207 1307 147 HOH HOH . H 4 HOH A 208 1308 105 HOH HOH . H 4 HOH A 209 1309 225 HOH HOH . H 4 HOH A 210 1310 188 HOH HOH . H 4 HOH A 211 1311 302 HOH HOH . H 4 HOH A 212 1312 222 HOH HOH . H 4 HOH A 213 1313 159 HOH HOH . H 4 HOH A 214 1314 296 HOH HOH . H 4 HOH A 215 1315 238 HOH HOH . H 4 HOH A 216 1316 223 HOH HOH . H 4 HOH A 217 1317 146 HOH HOH . H 4 HOH A 218 1318 200 HOH HOH . H 4 HOH A 219 1319 23 HOH HOH . H 4 HOH A 220 1320 198 HOH HOH . H 4 HOH A 221 1321 285 HOH HOH . H 4 HOH A 222 1322 111 HOH HOH . H 4 HOH A 223 1323 268 HOH HOH . H 4 HOH A 224 1324 265 HOH HOH . H 4 HOH A 225 1325 298 HOH HOH . H 4 HOH A 226 1326 284 HOH HOH . H 4 HOH A 227 1327 101 HOH HOH . H 4 HOH A 228 1328 209 HOH HOH . H 4 HOH A 229 1329 286 HOH HOH . H 4 HOH A 230 1330 177 HOH HOH . H 4 HOH A 231 1331 174 HOH HOH . H 4 HOH A 232 1332 264 HOH HOH . H 4 HOH A 233 1333 119 HOH HOH . H 4 HOH A 234 1334 112 HOH HOH . H 4 HOH A 235 1335 22 HOH HOH . H 4 HOH A 236 1336 221 HOH HOH . H 4 HOH A 237 1337 154 HOH HOH . H 4 HOH A 238 1338 152 HOH HOH . H 4 HOH A 239 1339 123 HOH HOH . H 4 HOH A 240 1340 207 HOH HOH . H 4 HOH A 241 1341 46 HOH HOH . H 4 HOH A 242 1342 304 HOH HOH . H 4 HOH A 243 1343 299 HOH HOH . H 4 HOH A 244 1344 239 HOH HOH . H 4 HOH A 245 1345 186 HOH HOH . H 4 HOH A 246 1346 168 HOH HOH . H 4 HOH A 247 1347 257 HOH HOH . H 4 HOH A 248 1348 271 HOH HOH . H 4 HOH A 249 1349 189 HOH HOH . H 4 HOH A 250 1350 173 HOH HOH . H 4 HOH A 251 1351 162 HOH HOH . H 4 HOH A 252 1352 242 HOH HOH . H 4 HOH A 253 1353 231 HOH HOH . H 4 HOH A 254 1354 254 HOH HOH . H 4 HOH A 255 1355 179 HOH HOH . H 4 HOH A 256 1356 155 HOH HOH . H 4 HOH A 257 1357 204 HOH HOH . H 4 HOH A 258 1358 226 HOH HOH . H 4 HOH A 259 1359 232 HOH HOH . H 4 HOH A 260 1360 149 HOH HOH . H 4 HOH A 261 1361 248 HOH HOH . H 4 HOH A 262 1362 256 HOH HOH . H 4 HOH A 263 1363 269 HOH HOH . H 4 HOH A 264 1364 175 HOH HOH . H 4 HOH A 265 1365 124 HOH HOH . H 4 HOH A 266 1366 240 HOH HOH . H 4 HOH A 267 1367 261 HOH HOH . H 4 HOH A 268 1368 108 HOH HOH . H 4 HOH A 269 1369 99 HOH HOH . H 4 HOH A 270 1370 158 HOH HOH . H 4 HOH A 271 1371 283 HOH HOH . H 4 HOH A 272 1372 69 HOH HOH . H 4 HOH A 273 1373 190 HOH HOH . H 4 HOH A 274 1374 138 HOH HOH . H 4 HOH A 275 1375 277 HOH HOH . H 4 HOH A 276 1376 224 HOH HOH . H 4 HOH A 277 1377 185 HOH HOH . H 4 HOH A 278 1378 253 HOH HOH . H 4 HOH A 279 1379 199 HOH HOH . H 4 HOH A 280 1380 85 HOH HOH . H 4 HOH A 281 1381 178 HOH HOH . H 4 HOH A 282 1382 110 HOH HOH . H 4 HOH A 283 1383 157 HOH HOH . H 4 HOH A 284 1384 266 HOH HOH . H 4 HOH A 285 1385 129 HOH HOH . H 4 HOH A 286 1386 255 HOH HOH . H 4 HOH A 287 1387 176 HOH HOH . H 4 HOH A 288 1388 45 HOH HOH . H 4 HOH A 289 1389 288 HOH HOH . H 4 HOH A 290 1390 193 HOH HOH . H 4 HOH A 291 1391 116 HOH HOH . H 4 HOH A 292 1392 65 HOH HOH . H 4 HOH A 293 1393 130 HOH HOH . H 4 HOH A 294 1394 217 HOH HOH . H 4 HOH A 295 1395 241 HOH HOH . H 4 HOH A 296 1396 247 HOH HOH . H 4 HOH A 297 1397 37 HOH HOH . H 4 HOH A 298 1398 151 HOH HOH . H 4 HOH A 299 1399 156 HOH HOH . H 4 HOH A 300 1400 153 HOH HOH . H 4 HOH A 301 1401 181 HOH HOH . H 4 HOH A 302 1402 120 HOH HOH . H 4 HOH A 303 1403 233 HOH HOH . H 4 HOH A 304 1404 258 HOH HOH . H 4 HOH A 305 1405 220 HOH HOH . H 4 HOH A 306 1406 92 HOH HOH . H 4 HOH A 307 1407 210 HOH HOH . H 4 HOH A 308 1408 192 HOH HOH . H 4 HOH A 309 1409 191 HOH HOH . H 4 HOH A 310 1410 211 HOH HOH . H 4 HOH A 311 1411 274 HOH HOH . H 4 HOH A 312 1412 243 HOH HOH . H 4 HOH A 313 1413 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 3 21.981 13.946 7.814 1 156.86 ? S DMS 1005 A 1 HETATM 2 O O DMS . . . F 3 23.306 14.524 7.564 1 157.03 ? O DMS 1005 A 1 HETATM 3 C C1 DMS . . . F 3 22.275 12.66 8.994 1 156.83 ? C1 DMS 1005 A 1 HETATM 4 C C2 DMS . . . F 3 21.648 12.954 6.385 1 156.66 ? C2 DMS 1005 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #