data_7GIM # _model_server_result.job_id n_1T4KkgYr06jKyk_TFfjw _model_server_result.datetime_utc '2025-01-28 23:39:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 7GIM # _exptl.entry_id 7GIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GIM _cell.length_a 67.25 _cell.length_b 98.34 _cell.length_c 102.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GIM _atom_sites.fract_transf_matrix[1][1] 0.01487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 403 DMS DMS . F 3 QHI A 1 404 501 QHI LIG . G 2 DMS A 1 405 502 DMS DMS . H 2 DMS B 1 401 401 DMS DMS . I 2 DMS B 1 402 402 DMS DMS . J 2 DMS B 1 403 403 DMS DMS . K 3 QHI B 1 404 501 QHI LIG . L 2 DMS B 1 405 502 DMS DMS . M 4 HOH A 1 501 63 HOH HOH . M 4 HOH A 2 502 74 HOH HOH . M 4 HOH A 3 503 240 HOH HOH . M 4 HOH A 4 504 90 HOH HOH . M 4 HOH A 5 505 76 HOH HOH . M 4 HOH A 6 506 178 HOH HOH . M 4 HOH A 7 507 248 HOH HOH . M 4 HOH A 8 508 69 HOH HOH . M 4 HOH A 9 509 191 HOH HOH . M 4 HOH A 10 510 150 HOH HOH . M 4 HOH A 11 511 71 HOH HOH . M 4 HOH A 12 512 162 HOH HOH . M 4 HOH A 13 513 59 HOH HOH . M 4 HOH A 14 514 122 HOH HOH . M 4 HOH A 15 515 216 HOH HOH . M 4 HOH A 16 516 175 HOH HOH . M 4 HOH A 17 517 266 HOH HOH . M 4 HOH A 18 518 182 HOH HOH . M 4 HOH A 19 519 133 HOH HOH . M 4 HOH A 20 520 173 HOH HOH . M 4 HOH A 21 521 66 HOH HOH . M 4 HOH A 22 522 102 HOH HOH . M 4 HOH A 23 523 206 HOH HOH . M 4 HOH A 24 524 85 HOH HOH . M 4 HOH A 25 525 62 HOH HOH . M 4 HOH A 26 526 10 HOH HOH . M 4 HOH A 27 527 84 HOH HOH . M 4 HOH A 28 528 64 HOH HOH . M 4 HOH A 29 529 207 HOH HOH . M 4 HOH A 30 530 228 HOH HOH . M 4 HOH A 31 531 93 HOH HOH . M 4 HOH A 32 532 81 HOH HOH . M 4 HOH A 33 533 104 HOH HOH . M 4 HOH A 34 534 68 HOH HOH . M 4 HOH A 35 535 241 HOH HOH . M 4 HOH A 36 536 196 HOH HOH . M 4 HOH A 37 537 231 HOH HOH . M 4 HOH A 38 538 158 HOH HOH . M 4 HOH A 39 539 4 HOH HOH . M 4 HOH A 40 540 152 HOH HOH . M 4 HOH A 41 541 73 HOH HOH . M 4 HOH A 42 542 48 HOH HOH . M 4 HOH A 43 543 208 HOH HOH . M 4 HOH A 44 544 197 HOH HOH . M 4 HOH A 45 545 29 HOH HOH . M 4 HOH A 46 546 255 HOH HOH . M 4 HOH A 47 547 254 HOH HOH . M 4 HOH A 48 548 230 HOH HOH . M 4 HOH A 49 549 97 HOH HOH . M 4 HOH A 50 550 61 HOH HOH . M 4 HOH A 51 551 91 HOH HOH . M 4 HOH A 52 552 229 HOH HOH . M 4 HOH A 53 553 87 HOH HOH . M 4 HOH A 54 554 77 HOH HOH . M 4 HOH A 55 555 65 HOH HOH . M 4 HOH A 56 556 70 HOH HOH . M 4 HOH A 57 557 203 HOH HOH . M 4 HOH A 58 558 75 HOH HOH . M 4 HOH A 59 559 137 HOH HOH . M 4 HOH A 60 560 204 HOH HOH . M 4 HOH A 61 561 100 HOH HOH . M 4 HOH A 62 562 117 HOH HOH . M 4 HOH A 63 563 165 HOH HOH . M 4 HOH A 64 564 55 HOH HOH . M 4 HOH A 65 565 129 HOH HOH . M 4 HOH A 66 566 136 HOH HOH . M 4 HOH A 67 567 78 HOH HOH . M 4 HOH A 68 568 83 HOH HOH . M 4 HOH A 69 569 170 HOH HOH . M 4 HOH A 70 570 215 HOH HOH . M 4 HOH A 71 571 142 HOH HOH . M 4 HOH A 72 572 135 HOH HOH . M 4 HOH A 73 573 72 HOH HOH . M 4 HOH A 74 574 201 HOH HOH . M 4 HOH A 75 575 99 HOH HOH . M 4 HOH A 76 576 211 HOH HOH . M 4 HOH A 77 577 92 HOH HOH . M 4 HOH A 78 578 106 HOH HOH . M 4 HOH A 79 579 148 HOH HOH . M 4 HOH A 80 580 145 HOH HOH . M 4 HOH A 81 581 177 HOH HOH . M 4 HOH A 82 582 110 HOH HOH . M 4 HOH A 83 583 109 HOH HOH . M 4 HOH A 84 584 98 HOH HOH . M 4 HOH A 85 585 96 HOH HOH . M 4 HOH A 86 586 181 HOH HOH . M 4 HOH A 87 587 120 HOH HOH . M 4 HOH A 88 588 114 HOH HOH . M 4 HOH A 89 589 113 HOH HOH . M 4 HOH A 90 590 1 HOH HOH . M 4 HOH A 91 591 2 HOH HOH . M 4 HOH A 92 592 13 HOH HOH . M 4 HOH A 93 593 67 HOH HOH . M 4 HOH A 94 594 86 HOH HOH . M 4 HOH A 95 595 105 HOH HOH . M 4 HOH A 96 596 89 HOH HOH . M 4 HOH A 97 597 108 HOH HOH . M 4 HOH A 98 598 252 HOH HOH . M 4 HOH A 99 599 94 HOH HOH . M 4 HOH A 100 600 194 HOH HOH . M 4 HOH A 101 601 80 HOH HOH . M 4 HOH A 102 602 107 HOH HOH . M 4 HOH A 103 603 115 HOH HOH . M 4 HOH A 104 604 154 HOH HOH . M 4 HOH A 105 605 193 HOH HOH . M 4 HOH A 106 606 146 HOH HOH . M 4 HOH A 107 607 205 HOH HOH . M 4 HOH A 108 608 245 HOH HOH . M 4 HOH A 109 609 101 HOH HOH . M 4 HOH A 110 610 7 HOH HOH . M 4 HOH A 111 611 112 HOH HOH . M 4 HOH A 112 612 220 HOH HOH . M 4 HOH A 113 613 192 HOH HOH . M 4 HOH A 114 614 121 HOH HOH . M 4 HOH A 115 615 95 HOH HOH . M 4 HOH A 116 616 166 HOH HOH . M 4 HOH A 117 617 119 HOH HOH . M 4 HOH A 118 618 172 HOH HOH . M 4 HOH A 119 619 221 HOH HOH . M 4 HOH A 120 620 8 HOH HOH . M 4 HOH A 121 621 184 HOH HOH . M 4 HOH A 122 622 227 HOH HOH . M 4 HOH A 123 623 251 HOH HOH . M 4 HOH A 124 624 268 HOH HOH . M 4 HOH A 125 625 111 HOH HOH . M 4 HOH A 126 626 134 HOH HOH . M 4 HOH A 127 627 213 HOH HOH . M 4 HOH A 128 628 118 HOH HOH . M 4 HOH A 129 629 200 HOH HOH . M 4 HOH A 130 630 155 HOH HOH . M 4 HOH A 131 631 244 HOH HOH . M 4 HOH A 132 632 187 HOH HOH . M 4 HOH A 133 633 116 HOH HOH . M 4 HOH A 134 634 202 HOH HOH . M 4 HOH A 135 635 198 HOH HOH . M 4 HOH A 136 636 123 HOH HOH . M 4 HOH A 137 637 79 HOH HOH . M 4 HOH A 138 638 9 HOH HOH . M 4 HOH A 139 639 267 HOH HOH . M 4 HOH A 140 640 219 HOH HOH . M 4 HOH A 141 641 12 HOH HOH . M 4 HOH A 142 642 226 HOH HOH . M 4 HOH A 143 643 163 HOH HOH . M 4 HOH A 144 644 15 HOH HOH . M 4 HOH A 145 645 232 HOH HOH . M 4 HOH A 146 646 265 HOH HOH . M 4 HOH A 147 647 141 HOH HOH . M 4 HOH A 148 648 124 HOH HOH . M 4 HOH A 149 649 264 HOH HOH . M 4 HOH A 150 650 171 HOH HOH . M 4 HOH A 151 651 126 HOH HOH . M 4 HOH A 152 652 186 HOH HOH . M 4 HOH A 153 653 156 HOH HOH . M 4 HOH A 154 654 161 HOH HOH . M 4 HOH A 155 655 127 HOH HOH . M 4 HOH A 156 656 14 HOH HOH . M 4 HOH A 157 657 125 HOH HOH . M 4 HOH A 158 658 217 HOH HOH . M 4 HOH A 159 659 183 HOH HOH . M 4 HOH A 160 660 128 HOH HOH . M 4 HOH A 161 661 130 HOH HOH . M 4 HOH A 162 662 160 HOH HOH . M 4 HOH A 163 663 11 HOH HOH . M 4 HOH A 164 664 263 HOH HOH . N 4 HOH B 1 501 222 HOH HOH . N 4 HOH B 2 502 157 HOH HOH . N 4 HOH B 3 503 195 HOH HOH . N 4 HOH B 4 504 18 HOH HOH . N 4 HOH B 5 505 17 HOH HOH . N 4 HOH B 6 506 153 HOH HOH . N 4 HOH B 7 507 169 HOH HOH . N 4 HOH B 8 508 233 HOH HOH . N 4 HOH B 9 509 36 HOH HOH . N 4 HOH B 10 510 24 HOH HOH . N 4 HOH B 11 511 28 HOH HOH . N 4 HOH B 12 512 103 HOH HOH . N 4 HOH B 13 513 247 HOH HOH . N 4 HOH B 14 514 144 HOH HOH . N 4 HOH B 15 515 23 HOH HOH . N 4 HOH B 16 516 16 HOH HOH . N 4 HOH B 17 517 30 HOH HOH . N 4 HOH B 18 518 218 HOH HOH . N 4 HOH B 19 519 164 HOH HOH . N 4 HOH B 20 520 22 HOH HOH . N 4 HOH B 21 521 39 HOH HOH . N 4 HOH B 22 522 37 HOH HOH . N 4 HOH B 23 523 159 HOH HOH . N 4 HOH B 24 524 38 HOH HOH . N 4 HOH B 25 525 52 HOH HOH . N 4 HOH B 26 526 185 HOH HOH . N 4 HOH B 27 527 138 HOH HOH . N 4 HOH B 28 528 43 HOH HOH . N 4 HOH B 29 529 20 HOH HOH . N 4 HOH B 30 530 6 HOH HOH . N 4 HOH B 31 531 139 HOH HOH . N 4 HOH B 32 532 26 HOH HOH . N 4 HOH B 33 533 44 HOH HOH . N 4 HOH B 34 534 261 HOH HOH . N 4 HOH B 35 535 212 HOH HOH . N 4 HOH B 36 536 188 HOH HOH . N 4 HOH B 37 537 41 HOH HOH . N 4 HOH B 38 538 19 HOH HOH . N 4 HOH B 39 539 51 HOH HOH . N 4 HOH B 40 540 88 HOH HOH . N 4 HOH B 41 541 140 HOH HOH . N 4 HOH B 42 542 259 HOH HOH . N 4 HOH B 43 543 260 HOH HOH . N 4 HOH B 44 544 21 HOH HOH . N 4 HOH B 45 545 27 HOH HOH . N 4 HOH B 46 546 242 HOH HOH . N 4 HOH B 47 547 35 HOH HOH . N 4 HOH B 48 548 46 HOH HOH . N 4 HOH B 49 549 143 HOH HOH . N 4 HOH B 50 550 3 HOH HOH . N 4 HOH B 51 551 33 HOH HOH . N 4 HOH B 52 552 179 HOH HOH . N 4 HOH B 53 553 209 HOH HOH . N 4 HOH B 54 554 53 HOH HOH . N 4 HOH B 55 555 58 HOH HOH . N 4 HOH B 56 556 132 HOH HOH . N 4 HOH B 57 557 82 HOH HOH . N 4 HOH B 58 558 189 HOH HOH . N 4 HOH B 59 559 34 HOH HOH . N 4 HOH B 60 560 42 HOH HOH . N 4 HOH B 61 561 5 HOH HOH . N 4 HOH B 62 562 50 HOH HOH . N 4 HOH B 63 563 256 HOH HOH . N 4 HOH B 64 564 54 HOH HOH . N 4 HOH B 65 565 56 HOH HOH . N 4 HOH B 66 566 45 HOH HOH . N 4 HOH B 67 567 31 HOH HOH . N 4 HOH B 68 568 131 HOH HOH . N 4 HOH B 69 569 214 HOH HOH . N 4 HOH B 70 570 253 HOH HOH . N 4 HOH B 71 571 40 HOH HOH . N 4 HOH B 72 572 243 HOH HOH . N 4 HOH B 73 573 57 HOH HOH . N 4 HOH B 74 574 262 HOH HOH . N 4 HOH B 75 575 147 HOH HOH . N 4 HOH B 76 576 225 HOH HOH . N 4 HOH B 77 577 47 HOH HOH . N 4 HOH B 78 578 174 HOH HOH . N 4 HOH B 79 579 237 HOH HOH . N 4 HOH B 80 580 269 HOH HOH . N 4 HOH B 81 581 238 HOH HOH . N 4 HOH B 82 582 234 HOH HOH . N 4 HOH B 83 583 199 HOH HOH . N 4 HOH B 84 584 250 HOH HOH . N 4 HOH B 85 585 168 HOH HOH . N 4 HOH B 86 586 249 HOH HOH . N 4 HOH B 87 587 180 HOH HOH . N 4 HOH B 88 588 25 HOH HOH . N 4 HOH B 89 589 190 HOH HOH . N 4 HOH B 90 590 167 HOH HOH . N 4 HOH B 91 591 149 HOH HOH . N 4 HOH B 92 592 235 HOH HOH . N 4 HOH B 93 593 210 HOH HOH . N 4 HOH B 94 594 60 HOH HOH . N 4 HOH B 95 595 151 HOH HOH . N 4 HOH B 96 596 236 HOH HOH . N 4 HOH B 97 597 258 HOH HOH . N 4 HOH B 98 598 176 HOH HOH . N 4 HOH B 99 599 223 HOH HOH . N 4 HOH B 100 600 239 HOH HOH . N 4 HOH B 101 601 257 HOH HOH . N 4 HOH B 102 602 224 HOH HOH . N 4 HOH B 103 603 49 HOH HOH . N 4 HOH B 104 604 32 HOH HOH . N 4 HOH B 105 605 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 2 -23.108 -2.449 10.196 1 51.99 ? S DMS 405 A 1 HETATM 2 O O DMS . . . G 2 -23.107 -3.931 10.124 1 51.55 ? O DMS 405 A 1 HETATM 3 C C1 DMS . . . G 2 -24.827 -1.985 10.246 1 51.54 ? C1 DMS 405 A 1 HETATM 4 C C2 DMS . . . G 2 -22.732 -1.909 8.543 1 51.78 ? C2 DMS 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #