data_7GIY # _model_server_result.job_id w2zl5xuycoS-_idMVfLBCA _model_server_result.datetime_utc '2024-11-16 12:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7giy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 7GIY # _exptl.entry_id 7GIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GIY _cell.length_a 67.11 _cell.length_b 97.97 _cell.length_c 102.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GIY _atom_sites.fract_transf_matrix[1][1] 0.014901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 403 DMS DMS . F 3 OI4 A 1 404 404 OI4 LIG . G 2 DMS A 1 405 405 DMS DMS . H 2 DMS A 1 406 406 DMS DMS . I 2 DMS B 1 401 401 DMS DMS . J 2 DMS B 1 402 402 DMS DMS . K 3 OI4 B 1 403 403 OI4 LIG . L 2 DMS B 1 404 404 DMS DMS . M 2 DMS B 1 405 405 DMS DMS . N 4 CL B 1 406 1 CL CL . O 5 HOH A 1 501 356 HOH HOH . O 5 HOH A 2 502 362 HOH HOH . O 5 HOH A 3 503 301 HOH HOH . O 5 HOH A 4 504 73 HOH HOH . O 5 HOH A 5 505 79 HOH HOH . O 5 HOH A 6 506 76 HOH HOH . O 5 HOH A 7 507 95 HOH HOH . O 5 HOH A 8 508 84 HOH HOH . O 5 HOH A 9 509 177 HOH HOH . O 5 HOH A 10 510 321 HOH HOH . O 5 HOH A 11 511 71 HOH HOH . O 5 HOH A 12 512 220 HOH HOH . O 5 HOH A 13 513 119 HOH HOH . O 5 HOH A 14 514 74 HOH HOH . O 5 HOH A 15 515 19 HOH HOH . O 5 HOH A 16 516 82 HOH HOH . O 5 HOH A 17 517 366 HOH HOH . O 5 HOH A 18 518 105 HOH HOH . O 5 HOH A 19 519 86 HOH HOH . O 5 HOH A 20 520 111 HOH HOH . O 5 HOH A 21 521 94 HOH HOH . O 5 HOH A 22 522 153 HOH HOH . O 5 HOH A 23 523 104 HOH HOH . O 5 HOH A 24 524 255 HOH HOH . O 5 HOH A 25 525 140 HOH HOH . O 5 HOH A 26 526 89 HOH HOH . O 5 HOH A 27 527 189 HOH HOH . O 5 HOH A 28 528 289 HOH HOH . O 5 HOH A 29 529 260 HOH HOH . O 5 HOH A 30 530 107 HOH HOH . O 5 HOH A 31 531 117 HOH HOH . O 5 HOH A 32 532 216 HOH HOH . O 5 HOH A 33 533 98 HOH HOH . O 5 HOH A 34 534 8 HOH HOH . O 5 HOH A 35 535 203 HOH HOH . O 5 HOH A 36 536 68 HOH HOH . O 5 HOH A 37 537 256 HOH HOH . O 5 HOH A 38 538 12 HOH HOH . O 5 HOH A 39 539 128 HOH HOH . O 5 HOH A 40 540 266 HOH HOH . O 5 HOH A 41 541 179 HOH HOH . O 5 HOH A 42 542 243 HOH HOH . O 5 HOH A 43 543 97 HOH HOH . O 5 HOH A 44 544 257 HOH HOH . O 5 HOH A 45 545 2 HOH HOH . O 5 HOH A 46 546 77 HOH HOH . O 5 HOH A 47 547 349 HOH HOH . O 5 HOH A 48 548 320 HOH HOH . O 5 HOH A 49 549 324 HOH HOH . O 5 HOH A 50 550 196 HOH HOH . O 5 HOH A 51 551 83 HOH HOH . O 5 HOH A 52 552 78 HOH HOH . O 5 HOH A 53 553 288 HOH HOH . O 5 HOH A 54 554 210 HOH HOH . O 5 HOH A 55 555 309 HOH HOH . O 5 HOH A 56 556 352 HOH HOH . O 5 HOH A 57 557 113 HOH HOH . O 5 HOH A 58 558 323 HOH HOH . O 5 HOH A 59 559 16 HOH HOH . O 5 HOH A 60 560 124 HOH HOH . O 5 HOH A 61 561 158 HOH HOH . O 5 HOH A 62 562 198 HOH HOH . O 5 HOH A 63 563 96 HOH HOH . O 5 HOH A 64 564 90 HOH HOH . O 5 HOH A 65 565 159 HOH HOH . O 5 HOH A 66 566 112 HOH HOH . O 5 HOH A 67 567 125 HOH HOH . O 5 HOH A 68 568 164 HOH HOH . O 5 HOH A 69 569 244 HOH HOH . O 5 HOH A 70 570 81 HOH HOH . O 5 HOH A 71 571 100 HOH HOH . O 5 HOH A 72 572 241 HOH HOH . O 5 HOH A 73 573 169 HOH HOH . O 5 HOH A 74 574 63 HOH HOH . O 5 HOH A 75 575 252 HOH HOH . O 5 HOH A 76 576 175 HOH HOH . O 5 HOH A 77 577 110 HOH HOH . O 5 HOH A 78 578 114 HOH HOH . O 5 HOH A 79 579 271 HOH HOH . O 5 HOH A 80 580 85 HOH HOH . O 5 HOH A 81 581 130 HOH HOH . O 5 HOH A 82 582 307 HOH HOH . O 5 HOH A 83 583 102 HOH HOH . O 5 HOH A 84 584 265 HOH HOH . O 5 HOH A 85 585 157 HOH HOH . O 5 HOH A 86 586 33 HOH HOH . O 5 HOH A 87 587 80 HOH HOH . O 5 HOH A 88 588 87 HOH HOH . O 5 HOH A 89 589 283 HOH HOH . O 5 HOH A 90 590 1 HOH HOH . O 5 HOH A 91 591 139 HOH HOH . O 5 HOH A 92 592 365 HOH HOH . O 5 HOH A 93 593 121 HOH HOH . O 5 HOH A 94 594 151 HOH HOH . O 5 HOH A 95 595 122 HOH HOH . O 5 HOH A 96 596 225 HOH HOH . O 5 HOH A 97 597 171 HOH HOH . O 5 HOH A 98 598 253 HOH HOH . O 5 HOH A 99 599 279 HOH HOH . O 5 HOH A 100 600 115 HOH HOH . O 5 HOH A 101 601 250 HOH HOH . O 5 HOH A 102 602 136 HOH HOH . O 5 HOH A 103 603 135 HOH HOH . O 5 HOH A 104 604 127 HOH HOH . O 5 HOH A 105 605 93 HOH HOH . O 5 HOH A 106 606 138 HOH HOH . O 5 HOH A 107 607 109 HOH HOH . O 5 HOH A 108 608 149 HOH HOH . O 5 HOH A 109 609 246 HOH HOH . O 5 HOH A 110 610 214 HOH HOH . O 5 HOH A 111 611 156 HOH HOH . O 5 HOH A 112 612 141 HOH HOH . O 5 HOH A 113 613 132 HOH HOH . O 5 HOH A 114 614 310 HOH HOH . O 5 HOH A 115 615 254 HOH HOH . O 5 HOH A 116 616 340 HOH HOH . O 5 HOH A 117 617 123 HOH HOH . O 5 HOH A 118 618 9 HOH HOH . O 5 HOH A 119 619 270 HOH HOH . O 5 HOH A 120 620 129 HOH HOH . O 5 HOH A 121 621 227 HOH HOH . O 5 HOH A 122 622 207 HOH HOH . O 5 HOH A 123 623 205 HOH HOH . O 5 HOH A 124 624 185 HOH HOH . O 5 HOH A 125 625 213 HOH HOH . O 5 HOH A 126 626 357 HOH HOH . O 5 HOH A 127 627 351 HOH HOH . O 5 HOH A 128 628 360 HOH HOH . O 5 HOH A 129 629 194 HOH HOH . O 5 HOH A 130 630 348 HOH HOH . O 5 HOH A 131 631 282 HOH HOH . O 5 HOH A 132 632 4 HOH HOH . O 5 HOH A 133 633 367 HOH HOH . O 5 HOH A 134 634 143 HOH HOH . O 5 HOH A 135 635 131 HOH HOH . O 5 HOH A 136 636 15 HOH HOH . O 5 HOH A 137 637 350 HOH HOH . O 5 HOH A 138 638 249 HOH HOH . O 5 HOH A 139 639 239 HOH HOH . O 5 HOH A 140 640 286 HOH HOH . O 5 HOH A 141 641 245 HOH HOH . O 5 HOH A 142 642 145 HOH HOH . O 5 HOH A 143 643 163 HOH HOH . O 5 HOH A 144 644 228 HOH HOH . O 5 HOH A 145 645 199 HOH HOH . O 5 HOH A 146 646 284 HOH HOH . O 5 HOH A 147 647 339 HOH HOH . O 5 HOH A 148 648 278 HOH HOH . O 5 HOH A 149 649 192 HOH HOH . O 5 HOH A 150 650 361 HOH HOH . O 5 HOH A 151 651 346 HOH HOH . O 5 HOH A 152 652 13 HOH HOH . O 5 HOH A 153 653 204 HOH HOH . O 5 HOH A 154 654 316 HOH HOH . O 5 HOH A 155 655 291 HOH HOH . O 5 HOH A 156 656 191 HOH HOH . O 5 HOH A 157 657 150 HOH HOH . O 5 HOH A 158 658 231 HOH HOH . P 5 HOH B 1 501 355 HOH HOH . P 5 HOH B 2 502 188 HOH HOH . P 5 HOH B 3 503 183 HOH HOH . P 5 HOH B 4 504 359 HOH HOH . P 5 HOH B 5 505 318 HOH HOH . P 5 HOH B 6 506 201 HOH HOH . P 5 HOH B 7 507 344 HOH HOH . P 5 HOH B 8 508 34 HOH HOH . P 5 HOH B 9 509 29 HOH HOH . P 5 HOH B 10 510 21 HOH HOH . P 5 HOH B 11 511 268 HOH HOH . P 5 HOH B 12 512 22 HOH HOH . P 5 HOH B 13 513 43 HOH HOH . P 5 HOH B 14 514 242 HOH HOH . P 5 HOH B 15 515 181 HOH HOH . P 5 HOH B 16 516 23 HOH HOH . P 5 HOH B 17 517 363 HOH HOH . P 5 HOH B 18 518 44 HOH HOH . P 5 HOH B 19 519 27 HOH HOH . P 5 HOH B 20 520 20 HOH HOH . P 5 HOH B 21 521 226 HOH HOH . P 5 HOH B 22 522 30 HOH HOH . P 5 HOH B 23 523 36 HOH HOH . P 5 HOH B 24 524 26 HOH HOH . P 5 HOH B 25 525 101 HOH HOH . P 5 HOH B 26 526 118 HOH HOH . P 5 HOH B 27 527 193 HOH HOH . P 5 HOH B 28 528 160 HOH HOH . P 5 HOH B 29 529 292 HOH HOH . P 5 HOH B 30 530 45 HOH HOH . P 5 HOH B 31 531 25 HOH HOH . P 5 HOH B 32 532 261 HOH HOH . P 5 HOH B 33 533 37 HOH HOH . P 5 HOH B 34 534 51 HOH HOH . P 5 HOH B 35 535 219 HOH HOH . P 5 HOH B 36 536 41 HOH HOH . P 5 HOH B 37 537 358 HOH HOH . P 5 HOH B 38 538 65 HOH HOH . P 5 HOH B 39 539 32 HOH HOH . P 5 HOH B 40 540 50 HOH HOH . P 5 HOH B 41 541 28 HOH HOH . P 5 HOH B 42 542 331 HOH HOH . P 5 HOH B 43 543 325 HOH HOH . P 5 HOH B 44 544 38 HOH HOH . P 5 HOH B 45 545 48 HOH HOH . P 5 HOH B 46 546 343 HOH HOH . P 5 HOH B 47 547 40 HOH HOH . P 5 HOH B 48 548 364 HOH HOH . P 5 HOH B 49 549 133 HOH HOH . P 5 HOH B 50 550 168 HOH HOH . P 5 HOH B 51 551 58 HOH HOH . P 5 HOH B 52 552 195 HOH HOH . P 5 HOH B 53 553 42 HOH HOH . P 5 HOH B 54 554 47 HOH HOH . P 5 HOH B 55 555 7 HOH HOH . P 5 HOH B 56 556 64 HOH HOH . P 5 HOH B 57 557 99 HOH HOH . P 5 HOH B 58 558 234 HOH HOH . P 5 HOH B 59 559 61 HOH HOH . P 5 HOH B 60 560 67 HOH HOH . P 5 HOH B 61 561 178 HOH HOH . P 5 HOH B 62 562 57 HOH HOH . P 5 HOH B 63 563 258 HOH HOH . P 5 HOH B 64 564 53 HOH HOH . P 5 HOH B 65 565 232 HOH HOH . P 5 HOH B 66 566 66 HOH HOH . P 5 HOH B 67 567 235 HOH HOH . P 5 HOH B 68 568 218 HOH HOH . P 5 HOH B 69 569 166 HOH HOH . P 5 HOH B 70 570 333 HOH HOH . P 5 HOH B 71 571 180 HOH HOH . P 5 HOH B 72 572 5 HOH HOH . P 5 HOH B 73 573 49 HOH HOH . P 5 HOH B 74 574 264 HOH HOH . P 5 HOH B 75 575 172 HOH HOH . P 5 HOH B 76 576 297 HOH HOH . P 5 HOH B 77 577 52 HOH HOH . P 5 HOH B 78 578 314 HOH HOH . P 5 HOH B 79 579 315 HOH HOH . P 5 HOH B 80 580 55 HOH HOH . P 5 HOH B 81 581 3 HOH HOH . P 5 HOH B 82 582 236 HOH HOH . P 5 HOH B 83 583 200 HOH HOH . P 5 HOH B 84 584 46 HOH HOH . P 5 HOH B 85 585 209 HOH HOH . P 5 HOH B 86 586 295 HOH HOH . P 5 HOH B 87 587 341 HOH HOH . P 5 HOH B 88 588 330 HOH HOH . P 5 HOH B 89 589 347 HOH HOH . P 5 HOH B 90 590 176 HOH HOH . P 5 HOH B 91 591 69 HOH HOH . P 5 HOH B 92 592 353 HOH HOH . P 5 HOH B 93 593 259 HOH HOH . P 5 HOH B 94 594 368 HOH HOH . P 5 HOH B 95 595 277 HOH HOH . P 5 HOH B 96 596 251 HOH HOH . P 5 HOH B 97 597 334 HOH HOH . P 5 HOH B 98 598 59 HOH HOH . P 5 HOH B 99 599 274 HOH HOH . P 5 HOH B 100 600 328 HOH HOH . P 5 HOH B 101 601 300 HOH HOH . P 5 HOH B 102 602 92 HOH HOH . P 5 HOH B 103 603 276 HOH HOH . P 5 HOH B 104 604 56 HOH HOH . P 5 HOH B 105 605 211 HOH HOH . P 5 HOH B 106 606 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 2 0.008 -11.311 18.915 1 61.13 ? S DMS 406 A 1 HETATM 2 O O DMS . . . H 2 1.366 -10.778 18.912 1 61.67 ? O DMS 406 A 1 HETATM 3 C C1 DMS . . . H 2 -0.773 -10.565 17.53 1 60.88 ? C1 DMS 406 A 1 HETATM 4 C C2 DMS . . . H 2 -0.754 -10.437 20.224 1 61.01 ? C2 DMS 406 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 626 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #