data_7GJ7 # _model_server_result.job_id PexLejb0yOVEMjsj8JOPEA _model_server_result.datetime_utc '2024-11-21 09:25:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7GJ7 # _exptl.entry_id 7GJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GJ7 _cell.length_a 67.26 _cell.length_b 98.5 _cell.length_c 103.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 E C Q0I . A Q0I 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 N C Q0I . B Q0I 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GJ7 _atom_sites.fract_transf_matrix[1][1] 0.014868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 402 DMS DMS . D 2 DMS A 1 402 403 DMS DMS . E 3 Q0I A 1 403 404 Q0I LIG . F 2 DMS A 1 404 405 DMS DMS . G 2 DMS A 1 405 406 DMS DMS . H 2 DMS A 1 406 407 DMS DMS . I 2 DMS A 1 407 410 DMS DMS . J 2 DMS A 1 408 411 DMS DMS . K 2 DMS B 1 401 401 DMS DMS . L 2 DMS B 1 402 401 DMS DMS . M 2 DMS B 1 403 402 DMS DMS . N 3 Q0I B 1 404 403 Q0I LIG . O 2 DMS B 1 405 404 DMS DMS . P 2 DMS B 1 406 405 DMS DMS . Q 2 DMS B 1 407 406 DMS DMS . R 4 HOH A 1 501 391 HOH HOH . R 4 HOH A 2 502 375 HOH HOH . R 4 HOH A 3 503 387 HOH HOH . R 4 HOH A 4 504 74 HOH HOH . R 4 HOH A 5 505 70 HOH HOH . R 4 HOH A 6 506 182 HOH HOH . R 4 HOH A 7 507 357 HOH HOH . R 4 HOH A 8 508 76 HOH HOH . R 4 HOH A 9 509 104 HOH HOH . R 4 HOH A 10 510 210 HOH HOH . R 4 HOH A 11 511 177 HOH HOH . R 4 HOH A 12 512 105 HOH HOH . R 4 HOH A 13 513 257 HOH HOH . R 4 HOH A 14 514 304 HOH HOH . R 4 HOH A 15 515 313 HOH HOH . R 4 HOH A 16 516 153 HOH HOH . R 4 HOH A 17 517 324 HOH HOH . R 4 HOH A 18 518 217 HOH HOH . R 4 HOH A 19 519 256 HOH HOH . R 4 HOH A 20 520 78 HOH HOH . R 4 HOH A 21 521 73 HOH HOH . R 4 HOH A 22 522 84 HOH HOH . R 4 HOH A 23 523 114 HOH HOH . R 4 HOH A 24 524 301 HOH HOH . R 4 HOH A 25 525 248 HOH HOH . R 4 HOH A 26 526 12 HOH HOH . R 4 HOH A 27 527 71 HOH HOH . R 4 HOH A 28 528 266 HOH HOH . R 4 HOH A 29 529 82 HOH HOH . R 4 HOH A 30 530 79 HOH HOH . R 4 HOH A 31 531 283 HOH HOH . R 4 HOH A 32 532 140 HOH HOH . R 4 HOH A 33 533 265 HOH HOH . R 4 HOH A 34 534 107 HOH HOH . R 4 HOH A 35 535 323 HOH HOH . R 4 HOH A 36 536 320 HOH HOH . R 4 HOH A 37 537 87 HOH HOH . R 4 HOH A 38 538 94 HOH HOH . R 4 HOH A 39 539 290 HOH HOH . R 4 HOH A 40 540 250 HOH HOH . R 4 HOH A 41 541 149 HOH HOH . R 4 HOH A 42 542 86 HOH HOH . R 4 HOH A 43 543 289 HOH HOH . R 4 HOH A 44 544 97 HOH HOH . R 4 HOH A 45 545 89 HOH HOH . R 4 HOH A 46 546 83 HOH HOH . R 4 HOH A 47 547 77 HOH HOH . R 4 HOH A 48 548 101 HOH HOH . R 4 HOH A 49 549 91 HOH HOH . R 4 HOH A 50 550 81 HOH HOH . R 4 HOH A 51 551 96 HOH HOH . R 4 HOH A 52 552 238 HOH HOH . R 4 HOH A 53 553 117 HOH HOH . R 4 HOH A 54 554 111 HOH HOH . R 4 HOH A 55 555 159 HOH HOH . R 4 HOH A 56 556 55 HOH HOH . R 4 HOH A 57 557 179 HOH HOH . R 4 HOH A 58 558 220 HOH HOH . R 4 HOH A 59 559 260 HOH HOH . R 4 HOH A 60 560 214 HOH HOH . R 4 HOH A 61 561 132 HOH HOH . R 4 HOH A 62 562 164 HOH HOH . R 4 HOH A 63 563 16 HOH HOH . R 4 HOH A 64 564 253 HOH HOH . R 4 HOH A 65 565 88 HOH HOH . R 4 HOH A 66 566 362 HOH HOH . R 4 HOH A 67 567 252 HOH HOH . R 4 HOH A 68 568 344 HOH HOH . R 4 HOH A 69 569 125 HOH HOH . R 4 HOH A 70 570 352 HOH HOH . R 4 HOH A 71 571 110 HOH HOH . R 4 HOH A 72 572 112 HOH HOH . R 4 HOH A 73 573 119 HOH HOH . R 4 HOH A 74 574 106 HOH HOH . R 4 HOH A 75 575 171 HOH HOH . R 4 HOH A 76 576 2 HOH HOH . R 4 HOH A 77 577 121 HOH HOH . R 4 HOH A 78 578 203 HOH HOH . R 4 HOH A 79 579 393 HOH HOH . R 4 HOH A 80 580 135 HOH HOH . R 4 HOH A 81 581 307 HOH HOH . R 4 HOH A 82 582 113 HOH HOH . R 4 HOH A 83 583 319 HOH HOH . R 4 HOH A 84 584 95 HOH HOH . R 4 HOH A 85 585 100 HOH HOH . R 4 HOH A 86 586 385 HOH HOH . R 4 HOH A 87 587 390 HOH HOH . R 4 HOH A 88 588 317 HOH HOH . R 4 HOH A 89 589 109 HOH HOH . R 4 HOH A 90 590 115 HOH HOH . R 4 HOH A 91 591 254 HOH HOH . R 4 HOH A 92 592 169 HOH HOH . R 4 HOH A 93 593 350 HOH HOH . R 4 HOH A 94 594 123 HOH HOH . R 4 HOH A 95 595 196 HOH HOH . R 4 HOH A 96 596 130 HOH HOH . R 4 HOH A 97 597 286 HOH HOH . R 4 HOH A 98 598 133 HOH HOH . R 4 HOH A 99 599 1 HOH HOH . R 4 HOH A 100 600 343 HOH HOH . R 4 HOH A 101 601 90 HOH HOH . R 4 HOH A 102 602 207 HOH HOH . R 4 HOH A 103 603 46 HOH HOH . R 4 HOH A 104 604 136 HOH HOH . R 4 HOH A 105 605 120 HOH HOH . R 4 HOH A 106 606 127 HOH HOH . R 4 HOH A 107 607 198 HOH HOH . R 4 HOH A 108 608 213 HOH HOH . R 4 HOH A 109 609 249 HOH HOH . R 4 HOH A 110 610 288 HOH HOH . R 4 HOH A 111 611 92 HOH HOH . R 4 HOH A 112 612 151 HOH HOH . R 4 HOH A 113 613 126 HOH HOH . R 4 HOH A 114 614 245 HOH HOH . R 4 HOH A 115 615 128 HOH HOH . R 4 HOH A 116 616 124 HOH HOH . R 4 HOH A 117 617 156 HOH HOH . R 4 HOH A 118 618 239 HOH HOH . R 4 HOH A 119 619 141 HOH HOH . R 4 HOH A 120 620 102 HOH HOH . R 4 HOH A 121 621 158 HOH HOH . R 4 HOH A 122 622 108 HOH HOH . R 4 HOH A 123 623 9 HOH HOH . R 4 HOH A 124 624 80 HOH HOH . R 4 HOH A 125 625 129 HOH HOH . R 4 HOH A 126 626 370 HOH HOH . R 4 HOH A 127 627 282 HOH HOH . R 4 HOH A 128 628 262 HOH HOH . R 4 HOH A 129 629 240 HOH HOH . R 4 HOH A 130 630 368 HOH HOH . R 4 HOH A 131 631 380 HOH HOH . R 4 HOH A 132 632 378 HOH HOH . R 4 HOH A 133 633 309 HOH HOH . R 4 HOH A 134 634 355 HOH HOH . R 4 HOH A 135 635 310 HOH HOH . R 4 HOH A 136 636 19 HOH HOH . R 4 HOH A 137 637 356 HOH HOH . R 4 HOH A 138 638 208 HOH HOH . R 4 HOH A 139 639 131 HOH HOH . R 4 HOH A 140 640 187 HOH HOH . R 4 HOH A 141 641 379 HOH HOH . R 4 HOH A 142 642 367 HOH HOH . R 4 HOH A 143 643 228 HOH HOH . R 4 HOH A 144 644 194 HOH HOH . R 4 HOH A 145 645 163 HOH HOH . R 4 HOH A 146 646 185 HOH HOH . R 4 HOH A 147 647 389 HOH HOH . R 4 HOH A 148 648 251 HOH HOH . R 4 HOH A 149 649 386 HOH HOH . R 4 HOH A 150 650 145 HOH HOH . R 4 HOH A 151 651 394 HOH HOH . R 4 HOH A 152 652 223 HOH HOH . R 4 HOH A 153 653 359 HOH HOH . R 4 HOH A 154 654 369 HOH HOH . R 4 HOH A 155 655 384 HOH HOH . R 4 HOH A 156 656 204 HOH HOH . R 4 HOH A 157 657 29 HOH HOH . R 4 HOH A 158 658 143 HOH HOH . R 4 HOH A 159 659 146 HOH HOH . R 4 HOH A 160 660 103 HOH HOH . R 4 HOH A 161 661 341 HOH HOH . R 4 HOH A 162 662 211 HOH HOH . R 4 HOH A 163 663 13 HOH HOH . R 4 HOH A 164 664 291 HOH HOH . R 4 HOH A 165 665 18 HOH HOH . R 4 HOH A 166 666 231 HOH HOH . R 4 HOH A 167 667 191 HOH HOH . R 4 HOH A 168 668 148 HOH HOH . S 4 HOH B 1 501 374 HOH HOH . S 4 HOH B 2 502 183 HOH HOH . S 4 HOH B 3 503 21 HOH HOH . S 4 HOH B 4 504 188 HOH HOH . S 4 HOH B 5 505 353 HOH HOH . S 4 HOH B 6 506 361 HOH HOH . S 4 HOH B 7 507 160 HOH HOH . S 4 HOH B 8 508 201 HOH HOH . S 4 HOH B 9 509 181 HOH HOH . S 4 HOH B 10 510 242 HOH HOH . S 4 HOH B 11 511 312 HOH HOH . S 4 HOH B 12 512 22 HOH HOH . S 4 HOH B 13 513 34 HOH HOH . S 4 HOH B 14 514 354 HOH HOH . S 4 HOH B 15 515 37 HOH HOH . S 4 HOH B 16 516 202 HOH HOH . S 4 HOH B 17 517 118 HOH HOH . S 4 HOH B 18 518 331 HOH HOH . S 4 HOH B 19 519 45 HOH HOH . S 4 HOH B 20 520 64 HOH HOH . S 4 HOH B 21 521 168 HOH HOH . S 4 HOH B 22 522 44 HOH HOH . S 4 HOH B 23 523 293 HOH HOH . S 4 HOH B 24 524 20 HOH HOH . S 4 HOH B 25 525 50 HOH HOH . S 4 HOH B 26 526 43 HOH HOH . S 4 HOH B 27 527 51 HOH HOH . S 4 HOH B 28 528 261 HOH HOH . S 4 HOH B 29 529 268 HOH HOH . S 4 HOH B 30 530 396 HOH HOH . S 4 HOH B 31 531 60 HOH HOH . S 4 HOH B 32 532 36 HOH HOH . S 4 HOH B 33 533 162 HOH HOH . S 4 HOH B 34 534 377 HOH HOH . S 4 HOH B 35 535 28 HOH HOH . S 4 HOH B 36 536 195 HOH HOH . S 4 HOH B 37 537 258 HOH HOH . S 4 HOH B 38 538 25 HOH HOH . S 4 HOH B 39 539 333 HOH HOH . S 4 HOH B 40 540 42 HOH HOH . S 4 HOH B 41 541 226 HOH HOH . S 4 HOH B 42 542 47 HOH HOH . S 4 HOH B 43 543 7 HOH HOH . S 4 HOH B 44 544 26 HOH HOH . S 4 HOH B 45 545 27 HOH HOH . S 4 HOH B 46 546 172 HOH HOH . S 4 HOH B 47 547 40 HOH HOH . S 4 HOH B 48 548 218 HOH HOH . S 4 HOH B 49 549 38 HOH HOH . S 4 HOH B 50 550 264 HOH HOH . S 4 HOH B 51 551 351 HOH HOH . S 4 HOH B 52 552 61 HOH HOH . S 4 HOH B 53 553 166 HOH HOH . S 4 HOH B 54 554 236 HOH HOH . S 4 HOH B 55 555 62 HOH HOH . S 4 HOH B 56 556 41 HOH HOH . S 4 HOH B 57 557 395 HOH HOH . S 4 HOH B 58 558 5 HOH HOH . S 4 HOH B 59 559 332 HOH HOH . S 4 HOH B 60 560 57 HOH HOH . S 4 HOH B 61 561 52 HOH HOH . S 4 HOH B 62 562 199 HOH HOH . S 4 HOH B 63 563 3 HOH HOH . S 4 HOH B 64 564 200 HOH HOH . S 4 HOH B 65 565 67 HOH HOH . S 4 HOH B 66 566 54 HOH HOH . S 4 HOH B 67 567 315 HOH HOH . S 4 HOH B 68 568 383 HOH HOH . S 4 HOH B 69 569 209 HOH HOH . S 4 HOH B 70 570 372 HOH HOH . S 4 HOH B 71 571 277 HOH HOH . S 4 HOH B 72 572 259 HOH HOH . S 4 HOH B 73 573 373 HOH HOH . S 4 HOH B 74 574 364 HOH HOH . S 4 HOH B 75 575 69 HOH HOH . S 4 HOH B 76 576 363 HOH HOH . S 4 HOH B 77 577 366 HOH HOH . S 4 HOH B 78 578 235 HOH HOH . S 4 HOH B 79 579 219 HOH HOH . S 4 HOH B 80 580 176 HOH HOH . S 4 HOH B 81 581 174 HOH HOH . S 4 HOH B 82 582 334 HOH HOH . S 4 HOH B 83 583 371 HOH HOH . S 4 HOH B 84 584 365 HOH HOH . S 4 HOH B 85 585 388 HOH HOH . S 4 HOH B 86 586 381 HOH HOH . S 4 HOH B 87 587 300 HOH HOH . S 4 HOH B 88 588 269 HOH HOH . S 4 HOH B 89 589 382 HOH HOH . S 4 HOH B 90 590 328 HOH HOH . S 4 HOH B 91 591 338 HOH HOH . S 4 HOH B 92 592 274 HOH HOH . S 4 HOH B 93 593 392 HOH HOH . S 4 HOH B 94 594 39 HOH HOH . S 4 HOH B 95 595 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 -18.695 6.578 34.929 1 70.3 ? S DMS 402 A 1 HETATM 2 O O DMS . . . D 2 -18.762 7.001 33.487 1 70.27 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . D 2 -20.373 6.201 35.425 1 69.98 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . D 2 -18.61 8.057 35.981 1 70.37 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #