data_7GJC # _model_server_result.job_id 7R4btuQiHQPWdvZo0gviJw _model_server_result.datetime_utc '2024-11-21 10:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7GJC # _exptl.entry_id 7GJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GJC _cell.length_a 67.663 _cell.length_b 98.817 _cell.length_c 103.096 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GJC _atom_sites.fract_transf_matrix[1][1] 0.014779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 3 QM3 A 1 403 501 QM3 LIG . F 2 DMS B 1 401 401 DMS DMS . G 2 DMS B 1 402 402 DMS DMS . H 3 QM3 B 1 403 403 QM3 LIG . I 4 HOH A 1 501 220 HOH HOH . I 4 HOH A 2 502 157 HOH HOH . I 4 HOH A 3 503 67 HOH HOH . I 4 HOH A 4 504 59 HOH HOH . I 4 HOH A 5 505 64 HOH HOH . I 4 HOH A 6 506 244 HOH HOH . I 4 HOH A 7 507 183 HOH HOH . I 4 HOH A 8 508 175 HOH HOH . I 4 HOH A 9 509 197 HOH HOH . I 4 HOH A 10 510 268 HOH HOH . I 4 HOH A 11 511 10 HOH HOH . I 4 HOH A 12 512 53 HOH HOH . I 4 HOH A 13 513 152 HOH HOH . I 4 HOH A 14 514 73 HOH HOH . I 4 HOH A 15 515 91 HOH HOH . I 4 HOH A 16 516 61 HOH HOH . I 4 HOH A 17 517 239 HOH HOH . I 4 HOH A 18 518 238 HOH HOH . I 4 HOH A 19 519 88 HOH HOH . I 4 HOH A 20 520 208 HOH HOH . I 4 HOH A 21 521 47 HOH HOH . I 4 HOH A 22 522 69 HOH HOH . I 4 HOH A 23 523 60 HOH HOH . I 4 HOH A 24 524 207 HOH HOH . I 4 HOH A 25 525 250 HOH HOH . I 4 HOH A 26 526 166 HOH HOH . I 4 HOH A 27 527 109 HOH HOH . I 4 HOH A 28 528 232 HOH HOH . I 4 HOH A 29 529 101 HOH HOH . I 4 HOH A 30 530 185 HOH HOH . I 4 HOH A 31 531 226 HOH HOH . I 4 HOH A 32 532 198 HOH HOH . I 4 HOH A 33 533 173 HOH HOH . I 4 HOH A 34 534 15 HOH HOH . I 4 HOH A 35 535 7 HOH HOH . I 4 HOH A 36 536 177 HOH HOH . I 4 HOH A 37 537 90 HOH HOH . I 4 HOH A 38 538 78 HOH HOH . I 4 HOH A 39 539 253 HOH HOH . I 4 HOH A 40 540 206 HOH HOH . I 4 HOH A 41 541 195 HOH HOH . I 4 HOH A 42 542 215 HOH HOH . I 4 HOH A 43 543 94 HOH HOH . I 4 HOH A 44 544 63 HOH HOH . I 4 HOH A 45 545 66 HOH HOH . I 4 HOH A 46 546 68 HOH HOH . I 4 HOH A 47 547 99 HOH HOH . I 4 HOH A 48 548 231 HOH HOH . I 4 HOH A 49 549 81 HOH HOH . I 4 HOH A 50 550 211 HOH HOH . I 4 HOH A 51 551 178 HOH HOH . I 4 HOH A 52 552 57 HOH HOH . I 4 HOH A 53 553 167 HOH HOH . I 4 HOH A 54 554 133 HOH HOH . I 4 HOH A 55 555 72 HOH HOH . I 4 HOH A 56 556 80 HOH HOH . I 4 HOH A 57 557 121 HOH HOH . I 4 HOH A 58 558 252 HOH HOH . I 4 HOH A 59 559 79 HOH HOH . I 4 HOH A 60 560 89 HOH HOH . I 4 HOH A 61 561 106 HOH HOH . I 4 HOH A 62 562 95 HOH HOH . I 4 HOH A 63 563 83 HOH HOH . I 4 HOH A 64 564 194 HOH HOH . I 4 HOH A 65 565 87 HOH HOH . I 4 HOH A 66 566 203 HOH HOH . I 4 HOH A 67 567 62 HOH HOH . I 4 HOH A 68 568 202 HOH HOH . I 4 HOH A 69 569 71 HOH HOH . I 4 HOH A 70 570 77 HOH HOH . I 4 HOH A 71 571 176 HOH HOH . I 4 HOH A 72 572 190 HOH HOH . I 4 HOH A 73 573 241 HOH HOH . I 4 HOH A 74 574 130 HOH HOH . I 4 HOH A 75 575 120 HOH HOH . I 4 HOH A 76 576 93 HOH HOH . I 4 HOH A 77 577 143 HOH HOH . I 4 HOH A 78 578 2 HOH HOH . I 4 HOH A 79 579 154 HOH HOH . I 4 HOH A 80 580 137 HOH HOH . I 4 HOH A 81 581 102 HOH HOH . I 4 HOH A 82 582 204 HOH HOH . I 4 HOH A 83 583 146 HOH HOH . I 4 HOH A 84 584 114 HOH HOH . I 4 HOH A 85 585 98 HOH HOH . I 4 HOH A 86 586 115 HOH HOH . I 4 HOH A 87 587 84 HOH HOH . I 4 HOH A 88 588 105 HOH HOH . I 4 HOH A 89 589 97 HOH HOH . I 4 HOH A 90 590 118 HOH HOH . I 4 HOH A 91 591 70 HOH HOH . I 4 HOH A 92 592 228 HOH HOH . I 4 HOH A 93 593 251 HOH HOH . I 4 HOH A 94 594 75 HOH HOH . I 4 HOH A 95 595 138 HOH HOH . I 4 HOH A 96 596 13 HOH HOH . I 4 HOH A 97 597 163 HOH HOH . I 4 HOH A 98 598 181 HOH HOH . I 4 HOH A 99 599 214 HOH HOH . I 4 HOH A 100 600 135 HOH HOH . I 4 HOH A 101 601 122 HOH HOH . I 4 HOH A 102 602 111 HOH HOH . I 4 HOH A 103 603 96 HOH HOH . I 4 HOH A 104 604 108 HOH HOH . I 4 HOH A 105 605 92 HOH HOH . I 4 HOH A 106 606 227 HOH HOH . I 4 HOH A 107 607 1 HOH HOH . I 4 HOH A 108 608 86 HOH HOH . I 4 HOH A 109 609 104 HOH HOH . I 4 HOH A 110 610 8 HOH HOH . I 4 HOH A 111 611 242 HOH HOH . I 4 HOH A 112 612 148 HOH HOH . I 4 HOH A 113 613 65 HOH HOH . I 4 HOH A 114 614 205 HOH HOH . I 4 HOH A 115 615 170 HOH HOH . I 4 HOH A 116 616 221 HOH HOH . I 4 HOH A 117 617 200 HOH HOH . I 4 HOH A 118 618 103 HOH HOH . I 4 HOH A 119 619 219 HOH HOH . I 4 HOH A 120 620 110 HOH HOH . I 4 HOH A 121 621 116 HOH HOH . I 4 HOH A 122 622 119 HOH HOH . I 4 HOH A 123 623 213 HOH HOH . I 4 HOH A 124 624 113 HOH HOH . I 4 HOH A 125 625 161 HOH HOH . I 4 HOH A 126 626 117 HOH HOH . I 4 HOH A 127 627 169 HOH HOH . I 4 HOH A 128 628 107 HOH HOH . I 4 HOH A 129 629 150 HOH HOH . I 4 HOH A 130 630 187 HOH HOH . I 4 HOH A 131 631 76 HOH HOH . I 4 HOH A 132 632 201 HOH HOH . I 4 HOH A 133 633 171 HOH HOH . I 4 HOH A 134 634 259 HOH HOH . I 4 HOH A 135 635 248 HOH HOH . I 4 HOH A 136 636 112 HOH HOH . I 4 HOH A 137 637 261 HOH HOH . I 4 HOH A 138 638 124 HOH HOH . I 4 HOH A 139 639 82 HOH HOH . I 4 HOH A 140 640 12 HOH HOH . I 4 HOH A 141 641 230 HOH HOH . I 4 HOH A 142 642 184 HOH HOH . I 4 HOH A 143 643 218 HOH HOH . I 4 HOH A 144 644 164 HOH HOH . I 4 HOH A 145 645 9 HOH HOH . I 4 HOH A 146 646 159 HOH HOH . I 4 HOH A 147 647 11 HOH HOH . I 4 HOH A 148 648 134 HOH HOH . I 4 HOH A 149 649 270 HOH HOH . I 4 HOH A 150 650 273 HOH HOH . I 4 HOH A 151 651 136 HOH HOH . I 4 HOH A 152 652 125 HOH HOH . I 4 HOH A 153 653 155 HOH HOH . I 4 HOH A 154 654 127 HOH HOH . I 4 HOH A 155 655 216 HOH HOH . I 4 HOH A 156 656 126 HOH HOH . I 4 HOH A 157 657 142 HOH HOH . I 4 HOH A 158 658 14 HOH HOH . I 4 HOH A 159 659 269 HOH HOH . I 4 HOH A 160 660 247 HOH HOH . I 4 HOH A 161 661 233 HOH HOH . I 4 HOH A 162 662 225 HOH HOH . I 4 HOH A 163 663 174 HOH HOH . I 4 HOH A 164 664 128 HOH HOH . I 4 HOH A 165 665 129 HOH HOH . I 4 HOH A 166 666 158 HOH HOH . I 4 HOH A 167 667 131 HOH HOH . I 4 HOH A 168 668 188 HOH HOH . I 4 HOH A 169 669 258 HOH HOH . J 4 HOH B 1 501 196 HOH HOH . J 4 HOH B 2 502 17 HOH HOH . J 4 HOH B 3 503 249 HOH HOH . J 4 HOH B 4 504 217 HOH HOH . J 4 HOH B 5 505 156 HOH HOH . J 4 HOH B 6 506 28 HOH HOH . J 4 HOH B 7 507 18 HOH HOH . J 4 HOH B 8 508 34 HOH HOH . J 4 HOH B 9 509 30 HOH HOH . J 4 HOH B 10 510 23 HOH HOH . J 4 HOH B 11 511 212 HOH HOH . J 4 HOH B 12 512 36 HOH HOH . J 4 HOH B 13 513 16 HOH HOH . J 4 HOH B 14 514 24 HOH HOH . J 4 HOH B 15 515 139 HOH HOH . J 4 HOH B 16 516 255 HOH HOH . J 4 HOH B 17 517 39 HOH HOH . J 4 HOH B 18 518 141 HOH HOH . J 4 HOH B 19 519 160 HOH HOH . J 4 HOH B 20 520 42 HOH HOH . J 4 HOH B 21 521 22 HOH HOH . J 4 HOH B 22 522 29 HOH HOH . J 4 HOH B 23 523 21 HOH HOH . J 4 HOH B 24 524 235 HOH HOH . J 4 HOH B 25 525 38 HOH HOH . J 4 HOH B 26 526 19 HOH HOH . J 4 HOH B 27 527 20 HOH HOH . J 4 HOH B 28 528 27 HOH HOH . J 4 HOH B 29 529 240 HOH HOH . J 4 HOH B 30 530 43 HOH HOH . J 4 HOH B 31 531 51 HOH HOH . J 4 HOH B 32 532 85 HOH HOH . J 4 HOH B 33 533 35 HOH HOH . J 4 HOH B 34 534 162 HOH HOH . J 4 HOH B 35 535 267 HOH HOH . J 4 HOH B 36 536 100 HOH HOH . J 4 HOH B 37 537 191 HOH HOH . J 4 HOH B 38 538 52 HOH HOH . J 4 HOH B 39 539 145 HOH HOH . J 4 HOH B 40 540 179 HOH HOH . J 4 HOH B 41 541 6 HOH HOH . J 4 HOH B 42 542 50 HOH HOH . J 4 HOH B 43 543 209 HOH HOH . J 4 HOH B 44 544 40 HOH HOH . J 4 HOH B 45 545 33 HOH HOH . J 4 HOH B 46 546 144 HOH HOH . J 4 HOH B 47 547 254 HOH HOH . J 4 HOH B 48 548 54 HOH HOH . J 4 HOH B 49 549 186 HOH HOH . J 4 HOH B 50 550 153 HOH HOH . J 4 HOH B 51 551 271 HOH HOH . J 4 HOH B 52 552 41 HOH HOH . J 4 HOH B 53 553 37 HOH HOH . J 4 HOH B 54 554 26 HOH HOH . J 4 HOH B 55 555 49 HOH HOH . J 4 HOH B 56 556 31 HOH HOH . J 4 HOH B 57 557 149 HOH HOH . J 4 HOH B 58 558 45 HOH HOH . J 4 HOH B 59 559 132 HOH HOH . J 4 HOH B 60 560 46 HOH HOH . J 4 HOH B 61 561 4 HOH HOH . J 4 HOH B 62 562 189 HOH HOH . J 4 HOH B 63 563 172 HOH HOH . J 4 HOH B 64 564 74 HOH HOH . J 4 HOH B 65 565 123 HOH HOH . J 4 HOH B 66 566 193 HOH HOH . J 4 HOH B 67 567 256 HOH HOH . J 4 HOH B 68 568 5 HOH HOH . J 4 HOH B 69 569 56 HOH HOH . J 4 HOH B 70 570 192 HOH HOH . J 4 HOH B 71 571 257 HOH HOH . J 4 HOH B 72 572 263 HOH HOH . J 4 HOH B 73 573 180 HOH HOH . J 4 HOH B 74 574 44 HOH HOH . J 4 HOH B 75 575 3 HOH HOH . J 4 HOH B 76 576 246 HOH HOH . J 4 HOH B 77 577 266 HOH HOH . J 4 HOH B 78 578 210 HOH HOH . J 4 HOH B 79 579 55 HOH HOH . J 4 HOH B 80 580 25 HOH HOH . J 4 HOH B 81 581 265 HOH HOH . J 4 HOH B 82 582 245 HOH HOH . J 4 HOH B 83 583 165 HOH HOH . J 4 HOH B 84 584 236 HOH HOH . J 4 HOH B 85 585 224 HOH HOH . J 4 HOH B 86 586 147 HOH HOH . J 4 HOH B 87 587 264 HOH HOH . J 4 HOH B 88 588 260 HOH HOH . J 4 HOH B 89 589 151 HOH HOH . J 4 HOH B 90 590 58 HOH HOH . J 4 HOH B 91 591 234 HOH HOH . J 4 HOH B 92 592 222 HOH HOH . J 4 HOH B 93 593 229 HOH HOH . J 4 HOH B 94 594 262 HOH HOH . J 4 HOH B 95 595 272 HOH HOH . J 4 HOH B 96 596 199 HOH HOH . J 4 HOH B 97 597 243 HOH HOH . J 4 HOH B 98 598 274 HOH HOH . J 4 HOH B 99 599 237 HOH HOH . J 4 HOH B 100 600 223 HOH HOH . J 4 HOH B 101 601 48 HOH HOH . J 4 HOH B 102 602 32 HOH HOH . J 4 HOH B 103 603 182 HOH HOH . J 4 HOH B 104 604 168 HOH HOH . J 4 HOH B 105 605 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 2 -3.059 6.457 25.272 1 91.05 ? S DMS 402 B 1 HETATM 2 O O DMS . . . G 2 -4.464 5.946 25.485 1 90.99 ? O DMS 402 B 1 HETATM 3 C C1 DMS . . . G 2 -2.56 7.279 26.815 1 91.04 ? C1 DMS 402 B 1 HETATM 4 C C2 DMS . . . G 2 -1.908 5.057 25.403 1 90.95 ? C2 DMS 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #