data_7GJL # _model_server_result.job_id lxPmiltMFjUgsUajCHnc4Q _model_server_result.datetime_utc '2024-11-21 10:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 7GJL # _exptl.entry_id 7GJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GJL _cell.length_a 67.05 _cell.length_b 98.02 _cell.length_c 102.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GJL _atom_sites.fract_transf_matrix[1][1] 0.014914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 402 DMS DMS . D 2 DMS A 1 402 403 DMS DMS . E 3 QOC A 1 403 501 QOC LIG . F 2 DMS B 1 401 401 DMS DMS . G 2 DMS B 1 402 401 DMS DMS . H 2 DMS B 1 403 402 DMS DMS . I 4 HOH A 1 501 70 HOH HOH . I 4 HOH A 2 502 273 HOH HOH . I 4 HOH A 3 503 79 HOH HOH . I 4 HOH A 4 504 222 HOH HOH . I 4 HOH A 5 505 104 HOH HOH . I 4 HOH A 6 506 290 HOH HOH . I 4 HOH A 7 507 177 HOH HOH . I 4 HOH A 8 508 74 HOH HOH . I 4 HOH A 9 509 89 HOH HOH . I 4 HOH A 10 510 313 HOH HOH . I 4 HOH A 11 511 82 HOH HOH . I 4 HOH A 12 512 189 HOH HOH . I 4 HOH A 13 513 111 HOH HOH . I 4 HOH A 14 514 76 HOH HOH . I 4 HOH A 15 515 73 HOH HOH . I 4 HOH A 16 516 309 HOH HOH . I 4 HOH A 17 517 303 HOH HOH . I 4 HOH A 18 518 321 HOH HOH . I 4 HOH A 19 519 266 HOH HOH . I 4 HOH A 20 520 87 HOH HOH . I 4 HOH A 21 521 105 HOH HOH . I 4 HOH A 22 522 12 HOH HOH . I 4 HOH A 23 523 118 HOH HOH . I 4 HOH A 24 524 98 HOH HOH . I 4 HOH A 25 525 153 HOH HOH . I 4 HOH A 26 526 84 HOH HOH . I 4 HOH A 27 527 97 HOH HOH . I 4 HOH A 28 528 120 HOH HOH . I 4 HOH A 29 529 255 HOH HOH . I 4 HOH A 30 530 257 HOH HOH . I 4 HOH A 31 531 302 HOH HOH . I 4 HOH A 32 532 324 HOH HOH . I 4 HOH A 33 533 83 HOH HOH . I 4 HOH A 34 534 95 HOH HOH . I 4 HOH A 35 535 117 HOH HOH . I 4 HOH A 36 536 71 HOH HOH . I 4 HOH A 37 537 301 HOH HOH . I 4 HOH A 38 538 107 HOH HOH . I 4 HOH A 39 539 100 HOH HOH . I 4 HOH A 40 540 94 HOH HOH . I 4 HOH A 41 541 140 HOH HOH . I 4 HOH A 42 542 119 HOH HOH . I 4 HOH A 43 543 63 HOH HOH . I 4 HOH A 44 544 323 HOH HOH . I 4 HOH A 45 545 68 HOH HOH . I 4 HOH A 46 546 81 HOH HOH . I 4 HOH A 47 547 256 HOH HOH . I 4 HOH A 48 548 16 HOH HOH . I 4 HOH A 49 549 320 HOH HOH . I 4 HOH A 50 550 112 HOH HOH . I 4 HOH A 51 551 137 HOH HOH . I 4 HOH A 52 552 260 HOH HOH . I 4 HOH A 53 553 96 HOH HOH . I 4 HOH A 54 554 93 HOH HOH . I 4 HOH A 55 555 216 HOH HOH . I 4 HOH A 56 556 2 HOH HOH . I 4 HOH A 57 557 88 HOH HOH . I 4 HOH A 58 558 244 HOH HOH . I 4 HOH A 59 559 252 HOH HOH . I 4 HOH A 60 560 241 HOH HOH . I 4 HOH A 61 561 220 HOH HOH . I 4 HOH A 62 562 289 HOH HOH . I 4 HOH A 63 563 288 HOH HOH . I 4 HOH A 64 564 304 HOH HOH . I 4 HOH A 65 565 110 HOH HOH . I 4 HOH A 66 566 124 HOH HOH . I 4 HOH A 67 567 125 HOH HOH . I 4 HOH A 68 568 86 HOH HOH . I 4 HOH A 69 569 169 HOH HOH . I 4 HOH A 70 570 114 HOH HOH . I 4 HOH A 71 571 159 HOH HOH . I 4 HOH A 72 572 78 HOH HOH . I 4 HOH A 73 573 149 HOH HOH . I 4 HOH A 74 574 158 HOH HOH . I 4 HOH A 75 575 217 HOH HOH . I 4 HOH A 76 576 132 HOH HOH . I 4 HOH A 77 577 133 HOH HOH . I 4 HOH A 78 578 164 HOH HOH . I 4 HOH A 79 579 283 HOH HOH . I 4 HOH A 80 580 213 HOH HOH . I 4 HOH A 81 581 1 HOH HOH . I 4 HOH A 82 582 214 HOH HOH . I 4 HOH A 83 583 115 HOH HOH . I 4 HOH A 84 584 179 HOH HOH . I 4 HOH A 85 585 131 HOH HOH . I 4 HOH A 86 586 198 HOH HOH . I 4 HOH A 87 587 44 HOH HOH . I 4 HOH A 88 588 279 HOH HOH . I 4 HOH A 89 589 307 HOH HOH . I 4 HOH A 90 590 121 HOH HOH . I 4 HOH A 91 591 246 HOH HOH . I 4 HOH A 92 592 282 HOH HOH . I 4 HOH A 93 593 344 HOH HOH . I 4 HOH A 94 594 250 HOH HOH . I 4 HOH A 95 595 265 HOH HOH . I 4 HOH A 96 596 9 HOH HOH . I 4 HOH A 97 597 113 HOH HOH . I 4 HOH A 98 598 225 HOH HOH . I 4 HOH A 99 599 136 HOH HOH . I 4 HOH A 100 600 151 HOH HOH . I 4 HOH A 101 601 138 HOH HOH . I 4 HOH A 102 602 127 HOH HOH . I 4 HOH A 103 603 130 HOH HOH . I 4 HOH A 104 604 123 HOH HOH . I 4 HOH A 105 605 156 HOH HOH . I 4 HOH A 106 606 208 HOH HOH . I 4 HOH A 107 607 122 HOH HOH . I 4 HOH A 108 608 342 HOH HOH . I 4 HOH A 109 609 90 HOH HOH . I 4 HOH A 110 610 91 HOH HOH . I 4 HOH A 111 611 210 HOH HOH . I 4 HOH A 112 612 102 HOH HOH . I 4 HOH A 113 613 206 HOH HOH . I 4 HOH A 114 614 171 HOH HOH . I 4 HOH A 115 615 337 HOH HOH . I 4 HOH A 116 616 109 HOH HOH . I 4 HOH A 117 617 8 HOH HOH . I 4 HOH A 118 618 129 HOH HOH . I 4 HOH A 119 619 263 HOH HOH . I 4 HOH A 120 620 319 HOH HOH . I 4 HOH A 121 621 135 HOH HOH . I 4 HOH A 122 622 270 HOH HOH . I 4 HOH A 123 623 126 HOH HOH . I 4 HOH A 124 624 173 HOH HOH . I 4 HOH A 125 625 310 HOH HOH . I 4 HOH A 126 626 141 HOH HOH . I 4 HOH A 127 627 54 HOH HOH . I 4 HOH A 128 628 139 HOH HOH . I 4 HOH A 129 629 227 HOH HOH . I 4 HOH A 130 630 254 HOH HOH . I 4 HOH A 131 631 286 HOH HOH . I 4 HOH A 132 632 207 HOH HOH . I 4 HOH A 133 633 186 HOH HOH . I 4 HOH A 134 634 80 HOH HOH . I 4 HOH A 135 635 15 HOH HOH . I 4 HOH A 136 636 205 HOH HOH . I 4 HOH A 137 637 143 HOH HOH . I 4 HOH A 138 638 224 HOH HOH . I 4 HOH A 139 639 163 HOH HOH . I 4 HOH A 140 640 239 HOH HOH . I 4 HOH A 141 641 194 HOH HOH . I 4 HOH A 142 642 271 HOH HOH . I 4 HOH A 143 643 231 HOH HOH . I 4 HOH A 144 644 249 HOH HOH . I 4 HOH A 145 645 192 HOH HOH . I 4 HOH A 146 646 262 HOH HOH . I 4 HOH A 147 647 269 HOH HOH . I 4 HOH A 148 648 253 HOH HOH . I 4 HOH A 149 649 145 HOH HOH . I 4 HOH A 150 650 281 HOH HOH . I 4 HOH A 151 651 187 HOH HOH . I 4 HOH A 152 652 185 HOH HOH . I 4 HOH A 153 653 215 HOH HOH . I 4 HOH A 154 654 267 HOH HOH . I 4 HOH A 155 655 228 HOH HOH . I 4 HOH A 156 656 291 HOH HOH . I 4 HOH A 157 657 278 HOH HOH . I 4 HOH A 158 658 343 HOH HOH . I 4 HOH A 159 659 280 HOH HOH . I 4 HOH A 160 660 245 HOH HOH . I 4 HOH A 161 661 305 HOH HOH . I 4 HOH A 162 662 18 HOH HOH . I 4 HOH A 163 663 161 HOH HOH . I 4 HOH A 164 664 204 HOH HOH . I 4 HOH A 165 665 92 HOH HOH . I 4 HOH A 166 666 316 HOH HOH . I 4 HOH A 167 667 106 HOH HOH . I 4 HOH A 168 668 155 HOH HOH . I 4 HOH A 169 669 223 HOH HOH . I 4 HOH A 170 670 329 HOH HOH . I 4 HOH A 171 671 148 HOH HOH . I 4 HOH A 172 672 13 HOH HOH . I 4 HOH A 173 673 147 HOH HOH . I 4 HOH A 174 674 150 HOH HOH . I 4 HOH A 175 675 341 HOH HOH . I 4 HOH A 176 676 191 HOH HOH . I 4 HOH A 177 677 287 HOH HOH . J 4 HOH B 1 501 197 HOH HOH . J 4 HOH B 2 502 308 HOH HOH . J 4 HOH B 3 503 21 HOH HOH . J 4 HOH B 4 504 188 HOH HOH . J 4 HOH B 5 505 339 HOH HOH . J 4 HOH B 6 506 201 HOH HOH . J 4 HOH B 7 507 27 HOH HOH . J 4 HOH B 8 508 268 HOH HOH . J 4 HOH B 9 509 22 HOH HOH . J 4 HOH B 10 510 318 HOH HOH . J 4 HOH B 11 511 242 HOH HOH . J 4 HOH B 12 512 162 HOH HOH . J 4 HOH B 13 513 181 HOH HOH . J 4 HOH B 14 514 45 HOH HOH . J 4 HOH B 15 515 29 HOH HOH . J 4 HOH B 16 516 25 HOH HOH . J 4 HOH B 17 517 34 HOH HOH . J 4 HOH B 18 518 193 HOH HOH . J 4 HOH B 19 519 312 HOH HOH . J 4 HOH B 20 520 50 HOH HOH . J 4 HOH B 21 521 20 HOH HOH . J 4 HOH B 22 522 101 HOH HOH . J 4 HOH B 23 523 37 HOH HOH . J 4 HOH B 24 524 322 HOH HOH . J 4 HOH B 25 525 32 HOH HOH . J 4 HOH B 26 526 43 HOH HOH . J 4 HOH B 27 527 36 HOH HOH . J 4 HOH B 28 528 332 HOH HOH . J 4 HOH B 29 529 168 HOH HOH . J 4 HOH B 30 530 28 HOH HOH . J 4 HOH B 31 531 327 HOH HOH . J 4 HOH B 32 532 331 HOH HOH . J 4 HOH B 33 533 167 HOH HOH . J 4 HOH B 34 534 60 HOH HOH . J 4 HOH B 35 535 295 HOH HOH . J 4 HOH B 36 536 64 HOH HOH . J 4 HOH B 37 537 7 HOH HOH . J 4 HOH B 38 538 258 HOH HOH . J 4 HOH B 39 539 261 HOH HOH . J 4 HOH B 40 540 41 HOH HOH . J 4 HOH B 41 541 59 HOH HOH . J 4 HOH B 42 542 51 HOH HOH . J 4 HOH B 43 543 292 HOH HOH . J 4 HOH B 44 544 234 HOH HOH . J 4 HOH B 45 545 61 HOH HOH . J 4 HOH B 46 546 62 HOH HOH . J 4 HOH B 47 547 42 HOH HOH . J 4 HOH B 48 548 180 HOH HOH . J 4 HOH B 49 549 235 HOH HOH . J 4 HOH B 50 550 190 HOH HOH . J 4 HOH B 51 551 160 HOH HOH . J 4 HOH B 52 552 199 HOH HOH . J 4 HOH B 53 553 142 HOH HOH . J 4 HOH B 54 554 212 HOH HOH . J 4 HOH B 55 555 172 HOH HOH . J 4 HOH B 56 556 264 HOH HOH . J 4 HOH B 57 557 195 HOH HOH . J 4 HOH B 58 558 306 HOH HOH . J 4 HOH B 59 559 293 HOH HOH . J 4 HOH B 60 560 55 HOH HOH . J 4 HOH B 61 561 176 HOH HOH . J 4 HOH B 62 562 325 HOH HOH . J 4 HOH B 63 563 333 HOH HOH . J 4 HOH B 64 564 166 HOH HOH . J 4 HOH B 65 565 294 HOH HOH . J 4 HOH B 66 566 47 HOH HOH . J 4 HOH B 67 567 38 HOH HOH . J 4 HOH B 68 568 299 HOH HOH . J 4 HOH B 69 569 236 HOH HOH . J 4 HOH B 70 570 152 HOH HOH . J 4 HOH B 71 571 48 HOH HOH . J 4 HOH B 72 572 58 HOH HOH . J 4 HOH B 73 573 40 HOH HOH . J 4 HOH B 74 574 57 HOH HOH . J 4 HOH B 75 575 297 HOH HOH . J 4 HOH B 76 576 46 HOH HOH . J 4 HOH B 77 577 315 HOH HOH . J 4 HOH B 78 578 317 HOH HOH . J 4 HOH B 79 579 67 HOH HOH . J 4 HOH B 80 580 3 HOH HOH . J 4 HOH B 81 581 99 HOH HOH . J 4 HOH B 82 582 298 HOH HOH . J 4 HOH B 83 583 218 HOH HOH . J 4 HOH B 84 584 178 HOH HOH . J 4 HOH B 85 585 49 HOH HOH . J 4 HOH B 86 586 275 HOH HOH . J 4 HOH B 87 587 209 HOH HOH . J 4 HOH B 88 588 314 HOH HOH . J 4 HOH B 89 589 200 HOH HOH . J 4 HOH B 90 590 66 HOH HOH . J 4 HOH B 91 591 259 HOH HOH . J 4 HOH B 92 592 116 HOH HOH . J 4 HOH B 93 593 35 HOH HOH . J 4 HOH B 94 594 277 HOH HOH . J 4 HOH B 95 595 52 HOH HOH . J 4 HOH B 96 596 14 HOH HOH . J 4 HOH B 97 597 330 HOH HOH . J 4 HOH B 98 598 53 HOH HOH . J 4 HOH B 99 599 170 HOH HOH . J 4 HOH B 100 600 338 HOH HOH . J 4 HOH B 101 601 31 HOH HOH . J 4 HOH B 102 602 5 HOH HOH . J 4 HOH B 103 603 334 HOH HOH . J 4 HOH B 104 604 232 HOH HOH . J 4 HOH B 105 605 336 HOH HOH . J 4 HOH B 106 606 174 HOH HOH . J 4 HOH B 107 607 65 HOH HOH . J 4 HOH B 108 608 219 HOH HOH . J 4 HOH B 109 609 69 HOH HOH . J 4 HOH B 110 610 345 HOH HOH . J 4 HOH B 111 611 296 HOH HOH . J 4 HOH B 112 612 335 HOH HOH . J 4 HOH B 113 613 300 HOH HOH . J 4 HOH B 114 614 284 HOH HOH . J 4 HOH B 115 615 285 HOH HOH . J 4 HOH B 116 616 274 HOH HOH . J 4 HOH B 117 617 328 HOH HOH . J 4 HOH B 118 618 221 HOH HOH . J 4 HOH B 119 619 103 HOH HOH . J 4 HOH B 120 620 326 HOH HOH . J 4 HOH B 121 621 211 HOH HOH . J 4 HOH B 122 622 56 HOH HOH . J 4 HOH B 123 623 276 HOH HOH . J 4 HOH B 124 624 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 2 -2.862 6.719 25.441 1 87.59 ? S DMS 403 B 1 HETATM 2 O O DMS . . . H 2 -4.296 6.37 25.507 1 87.27 ? O DMS 403 B 1 HETATM 3 C C1 DMS . . . H 2 -2.493 7.396 27.039 1 87.36 ? C1 DMS 403 B 1 HETATM 4 C C2 DMS . . . H 2 -1.995 5.174 25.571 1 87.57 ? C2 DMS 403 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #