data_7GK8 # _model_server_result.job_id 6IxUBQpcWl-muVRxuRoqGA _model_server_result.datetime_utc '2024-11-21 08:59:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 7GK8 # _exptl.entry_id 7GK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GK8 _cell.length_a 67.19 _cell.length_b 98.93 _cell.length_c 103.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GK8 _atom_sites.fract_transf_matrix[1][1] 0.014883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 402 DMS DMS . D 2 DMS A 1 402 406 DMS DMS . E 2 DMS A 1 403 407 DMS DMS . F 2 DMS A 1 404 408 DMS DMS . G 3 CL A 1 405 409 CL CL . H 4 QUQ A 1 406 501 QUQ LIG . I 2 DMS B 1 401 401 DMS DMS . J 2 DMS B 1 402 401 DMS DMS . K 2 DMS B 1 403 402 DMS DMS . L 4 QUQ B 1 404 501 QUQ LIG . M 5 HOH A 1 501 65 HOH HOH . M 5 HOH A 2 502 166 HOH HOH . M 5 HOH A 3 503 68 HOH HOH . M 5 HOH A 4 504 199 HOH HOH . M 5 HOH A 5 505 214 HOH HOH . M 5 HOH A 6 506 204 HOH HOH . M 5 HOH A 7 507 170 HOH HOH . M 5 HOH A 8 508 284 HOH HOH . M 5 HOH A 9 509 154 HOH HOH . M 5 HOH A 10 510 175 HOH HOH . M 5 HOH A 11 511 303 HOH HOH . M 5 HOH A 12 512 66 HOH HOH . M 5 HOH A 13 513 78 HOH HOH . M 5 HOH A 14 514 186 HOH HOH . M 5 HOH A 15 515 100 HOH HOH . M 5 HOH A 16 516 67 HOH HOH . M 5 HOH A 17 517 56 HOH HOH . M 5 HOH A 18 518 264 HOH HOH . M 5 HOH A 19 519 244 HOH HOH . M 5 HOH A 20 520 222 HOH HOH . M 5 HOH A 21 521 143 HOH HOH . M 5 HOH A 22 522 75 HOH HOH . M 5 HOH A 23 523 81 HOH HOH . M 5 HOH A 24 524 49 HOH HOH . M 5 HOH A 25 525 6 HOH HOH . M 5 HOH A 26 526 74 HOH HOH . M 5 HOH A 27 527 89 HOH HOH . M 5 HOH A 28 528 13 HOH HOH . M 5 HOH A 29 529 187 HOH HOH . M 5 HOH A 30 530 310 HOH HOH . M 5 HOH A 31 531 86 HOH HOH . M 5 HOH A 32 532 215 HOH HOH . M 5 HOH A 33 533 70 HOH HOH . M 5 HOH A 34 534 223 HOH HOH . M 5 HOH A 35 535 168 HOH HOH . M 5 HOH A 36 536 73 HOH HOH . M 5 HOH A 37 537 76 HOH HOH . M 5 HOH A 38 538 109 HOH HOH . M 5 HOH A 39 539 131 HOH HOH . M 5 HOH A 40 540 97 HOH HOH . M 5 HOH A 41 541 99 HOH HOH . M 5 HOH A 42 542 227 HOH HOH . M 5 HOH A 43 543 273 HOH HOH . M 5 HOH A 44 544 220 HOH HOH . M 5 HOH A 45 545 251 HOH HOH . M 5 HOH A 46 546 148 HOH HOH . M 5 HOH A 47 547 182 HOH HOH . M 5 HOH A 48 548 117 HOH HOH . M 5 HOH A 49 549 69 HOH HOH . M 5 HOH A 50 550 77 HOH HOH . M 5 HOH A 51 551 233 HOH HOH . M 5 HOH A 52 552 299 HOH HOH . M 5 HOH A 53 553 106 HOH HOH . M 5 HOH A 54 554 79 HOH HOH . M 5 HOH A 55 555 103 HOH HOH . M 5 HOH A 56 556 64 HOH HOH . M 5 HOH A 57 557 61 HOH HOH . M 5 HOH A 58 558 217 HOH HOH . M 5 HOH A 59 559 249 HOH HOH . M 5 HOH A 60 560 140 HOH HOH . M 5 HOH A 61 561 162 HOH HOH . M 5 HOH A 62 562 92 HOH HOH . M 5 HOH A 63 563 263 HOH HOH . M 5 HOH A 64 564 105 HOH HOH . M 5 HOH A 65 565 104 HOH HOH . M 5 HOH A 66 566 88 HOH HOH . M 5 HOH A 67 567 145 HOH HOH . M 5 HOH A 68 568 8 HOH HOH . M 5 HOH A 69 569 250 HOH HOH . M 5 HOH A 70 570 93 HOH HOH . M 5 HOH A 71 571 259 HOH HOH . M 5 HOH A 72 572 193 HOH HOH . M 5 HOH A 73 573 221 HOH HOH . M 5 HOH A 74 574 274 HOH HOH . M 5 HOH A 75 575 237 HOH HOH . M 5 HOH A 76 576 1 HOH HOH . M 5 HOH A 77 577 323 HOH HOH . M 5 HOH A 78 578 311 HOH HOH . M 5 HOH A 79 579 288 HOH HOH . M 5 HOH A 80 580 146 HOH HOH . M 5 HOH A 81 581 98 HOH HOH . M 5 HOH A 82 582 270 HOH HOH . M 5 HOH A 83 583 190 HOH HOH . M 5 HOH A 84 584 96 HOH HOH . M 5 HOH A 85 585 232 HOH HOH . M 5 HOH A 86 586 296 HOH HOH . M 5 HOH A 87 587 314 HOH HOH . M 5 HOH A 88 588 262 HOH HOH . M 5 HOH A 89 589 102 HOH HOH . M 5 HOH A 90 590 196 HOH HOH . M 5 HOH A 91 591 72 HOH HOH . M 5 HOH A 92 592 153 HOH HOH . M 5 HOH A 93 593 116 HOH HOH . M 5 HOH A 94 594 113 HOH HOH . M 5 HOH A 95 595 85 HOH HOH . M 5 HOH A 96 596 7 HOH HOH . M 5 HOH A 97 597 287 HOH HOH . M 5 HOH A 98 598 91 HOH HOH . M 5 HOH A 99 599 122 HOH HOH . M 5 HOH A 100 600 230 HOH HOH . M 5 HOH A 101 601 158 HOH HOH . M 5 HOH A 102 602 197 HOH HOH . M 5 HOH A 103 603 90 HOH HOH . M 5 HOH A 104 604 160 HOH HOH . M 5 HOH A 105 605 172 HOH HOH . M 5 HOH A 106 606 80 HOH HOH . M 5 HOH A 107 607 107 HOH HOH . M 5 HOH A 108 608 301 HOH HOH . M 5 HOH A 109 609 282 HOH HOH . M 5 HOH A 110 610 300 HOH HOH . M 5 HOH A 111 611 120 HOH HOH . M 5 HOH A 112 612 209 HOH HOH . M 5 HOH A 113 613 101 HOH HOH . M 5 HOH A 114 614 341 HOH HOH . M 5 HOH A 115 615 112 HOH HOH . M 5 HOH A 116 616 202 HOH HOH . M 5 HOH A 117 617 189 HOH HOH . M 5 HOH A 118 618 83 HOH HOH . M 5 HOH A 119 619 302 HOH HOH . M 5 HOH A 120 620 124 HOH HOH . M 5 HOH A 121 621 3 HOH HOH . M 5 HOH A 122 622 12 HOH HOH . M 5 HOH A 123 623 305 HOH HOH . M 5 HOH A 124 624 142 HOH HOH . M 5 HOH A 125 625 147 HOH HOH . M 5 HOH A 126 626 150 HOH HOH . M 5 HOH A 127 627 127 HOH HOH . M 5 HOH A 128 628 242 HOH HOH . M 5 HOH A 129 629 336 HOH HOH . M 5 HOH A 130 630 114 HOH HOH . M 5 HOH A 131 631 115 HOH HOH . M 5 HOH A 132 632 130 HOH HOH . M 5 HOH A 133 633 313 HOH HOH . M 5 HOH A 134 634 94 HOH HOH . M 5 HOH A 135 635 129 HOH HOH . M 5 HOH A 136 636 108 HOH HOH . M 5 HOH A 137 637 118 HOH HOH . M 5 HOH A 138 638 119 HOH HOH . M 5 HOH A 139 639 321 HOH HOH . M 5 HOH A 140 640 229 HOH HOH . M 5 HOH A 141 641 192 HOH HOH . M 5 HOH A 142 642 191 HOH HOH . M 5 HOH A 143 643 337 HOH HOH . M 5 HOH A 144 644 327 HOH HOH . M 5 HOH A 145 645 126 HOH HOH . M 5 HOH A 146 646 11 HOH HOH . M 5 HOH A 147 647 111 HOH HOH . M 5 HOH A 148 648 322 HOH HOH . M 5 HOH A 149 649 304 HOH HOH . M 5 HOH A 150 650 144 HOH HOH . M 5 HOH A 151 651 121 HOH HOH . M 5 HOH A 152 652 328 HOH HOH . M 5 HOH A 153 653 247 HOH HOH . M 5 HOH A 154 654 267 HOH HOH . M 5 HOH A 155 655 123 HOH HOH . M 5 HOH A 156 656 289 HOH HOH . M 5 HOH A 157 657 134 HOH HOH . M 5 HOH A 158 658 335 HOH HOH . M 5 HOH A 159 659 241 HOH HOH . M 5 HOH A 160 660 173 HOH HOH . M 5 HOH A 161 661 205 HOH HOH . M 5 HOH A 162 662 206 HOH HOH . M 5 HOH A 163 663 128 HOH HOH . M 5 HOH A 164 664 306 HOH HOH . M 5 HOH A 165 665 236 HOH HOH . M 5 HOH A 166 666 234 HOH HOH . M 5 HOH A 167 667 308 HOH HOH . M 5 HOH A 168 668 254 HOH HOH . M 5 HOH A 169 669 152 HOH HOH . M 5 HOH A 170 670 269 HOH HOH . M 5 HOH A 171 671 219 HOH HOH . M 5 HOH A 172 672 286 HOH HOH . M 5 HOH A 173 673 243 HOH HOH . M 5 HOH A 174 674 316 HOH HOH . M 5 HOH A 175 675 312 HOH HOH . M 5 HOH A 176 676 297 HOH HOH . M 5 HOH A 177 677 184 HOH HOH . M 5 HOH A 178 678 178 HOH HOH . M 5 HOH A 179 679 275 HOH HOH . M 5 HOH A 180 680 198 HOH HOH . M 5 HOH A 181 681 136 HOH HOH . M 5 HOH A 182 682 332 HOH HOH . M 5 HOH A 183 683 208 HOH HOH . M 5 HOH A 184 684 137 HOH HOH . M 5 HOH A 185 685 188 HOH HOH . M 5 HOH A 186 686 194 HOH HOH . M 5 HOH A 187 687 84 HOH HOH . M 5 HOH A 188 688 326 HOH HOH . M 5 HOH A 189 689 307 HOH HOH . M 5 HOH A 190 690 283 HOH HOH . M 5 HOH A 191 691 9 HOH HOH . M 5 HOH A 192 692 141 HOH HOH . M 5 HOH A 193 693 315 HOH HOH . M 5 HOH A 194 694 329 HOH HOH . M 5 HOH A 195 695 252 HOH HOH . M 5 HOH A 196 696 177 HOH HOH . M 5 HOH A 197 697 248 HOH HOH . M 5 HOH A 198 698 320 HOH HOH . N 5 HOH B 1 501 183 HOH HOH . N 5 HOH B 2 502 18 HOH HOH . N 5 HOH B 3 503 174 HOH HOH . N 5 HOH B 4 504 309 HOH HOH . N 5 HOH B 5 505 290 HOH HOH . N 5 HOH B 6 506 216 HOH HOH . N 5 HOH B 7 507 53 HOH HOH . N 5 HOH B 8 508 295 HOH HOH . N 5 HOH B 9 509 15 HOH HOH . N 5 HOH B 10 510 169 HOH HOH . N 5 HOH B 11 511 19 HOH HOH . N 5 HOH B 12 512 16 HOH HOH . N 5 HOH B 13 513 268 HOH HOH . N 5 HOH B 14 514 35 HOH HOH . N 5 HOH B 15 515 21 HOH HOH . N 5 HOH B 16 516 14 HOH HOH . N 5 HOH B 17 517 42 HOH HOH . N 5 HOH B 18 518 110 HOH HOH . N 5 HOH B 19 519 38 HOH HOH . N 5 HOH B 20 520 277 HOH HOH . N 5 HOH B 21 521 20 HOH HOH . N 5 HOH B 22 522 30 HOH HOH . N 5 HOH B 23 523 37 HOH HOH . N 5 HOH B 24 524 324 HOH HOH . N 5 HOH B 25 525 39 HOH HOH . N 5 HOH B 26 526 253 HOH HOH . N 5 HOH B 27 527 27 HOH HOH . N 5 HOH B 28 528 22 HOH HOH . N 5 HOH B 29 529 23 HOH HOH . N 5 HOH B 30 530 54 HOH HOH . N 5 HOH B 31 531 24 HOH HOH . N 5 HOH B 32 532 28 HOH HOH . N 5 HOH B 33 533 31 HOH HOH . N 5 HOH B 34 534 255 HOH HOH . N 5 HOH B 35 535 45 HOH HOH . N 5 HOH B 36 536 272 HOH HOH . N 5 HOH B 37 537 149 HOH HOH . N 5 HOH B 38 538 235 HOH HOH . N 5 HOH B 39 539 278 HOH HOH . N 5 HOH B 40 540 281 HOH HOH . N 5 HOH B 41 541 176 HOH HOH . N 5 HOH B 42 542 44 HOH HOH . N 5 HOH B 43 543 294 HOH HOH . N 5 HOH B 44 544 179 HOH HOH . N 5 HOH B 45 545 5 HOH HOH . N 5 HOH B 46 546 256 HOH HOH . N 5 HOH B 47 547 293 HOH HOH . N 5 HOH B 48 548 157 HOH HOH . N 5 HOH B 49 549 155 HOH HOH . N 5 HOH B 50 550 57 HOH HOH . N 5 HOH B 51 551 36 HOH HOH . N 5 HOH B 52 552 47 HOH HOH . N 5 HOH B 53 553 161 HOH HOH . N 5 HOH B 54 554 207 HOH HOH . N 5 HOH B 55 555 200 HOH HOH . N 5 HOH B 56 556 266 HOH HOH . N 5 HOH B 57 557 211 HOH HOH . N 5 HOH B 58 558 87 HOH HOH . N 5 HOH B 59 559 125 HOH HOH . N 5 HOH B 60 560 231 HOH HOH . N 5 HOH B 61 561 51 HOH HOH . N 5 HOH B 62 562 32 HOH HOH . N 5 HOH B 63 563 26 HOH HOH . N 5 HOH B 64 564 34 HOH HOH . N 5 HOH B 65 565 225 HOH HOH . N 5 HOH B 66 566 280 HOH HOH . N 5 HOH B 67 567 210 HOH HOH . N 5 HOH B 68 568 52 HOH HOH . N 5 HOH B 69 569 212 HOH HOH . N 5 HOH B 70 570 257 HOH HOH . N 5 HOH B 71 571 43 HOH HOH . N 5 HOH B 72 572 342 HOH HOH . N 5 HOH B 73 573 279 HOH HOH . N 5 HOH B 74 574 41 HOH HOH . N 5 HOH B 75 575 156 HOH HOH . N 5 HOH B 76 576 325 HOH HOH . N 5 HOH B 77 577 261 HOH HOH . N 5 HOH B 78 578 151 HOH HOH . N 5 HOH B 79 579 82 HOH HOH . N 5 HOH B 80 580 2 HOH HOH . N 5 HOH B 81 581 159 HOH HOH . N 5 HOH B 82 582 185 HOH HOH . N 5 HOH B 83 583 46 HOH HOH . N 5 HOH B 84 584 167 HOH HOH . N 5 HOH B 85 585 339 HOH HOH . N 5 HOH B 86 586 340 HOH HOH . N 5 HOH B 87 587 55 HOH HOH . N 5 HOH B 88 588 40 HOH HOH . N 5 HOH B 89 589 318 HOH HOH . N 5 HOH B 90 590 276 HOH HOH . N 5 HOH B 91 591 265 HOH HOH . N 5 HOH B 92 592 59 HOH HOH . N 5 HOH B 93 593 10 HOH HOH . N 5 HOH B 94 594 48 HOH HOH . N 5 HOH B 95 595 338 HOH HOH . N 5 HOH B 96 596 201 HOH HOH . N 5 HOH B 97 597 4 HOH HOH . N 5 HOH B 98 598 226 HOH HOH . N 5 HOH B 99 599 330 HOH HOH . N 5 HOH B 100 600 165 HOH HOH . N 5 HOH B 101 601 60 HOH HOH . N 5 HOH B 102 602 195 HOH HOH . N 5 HOH B 103 603 240 HOH HOH . N 5 HOH B 104 604 71 HOH HOH . N 5 HOH B 105 605 319 HOH HOH . N 5 HOH B 106 606 228 HOH HOH . N 5 HOH B 107 607 317 HOH HOH . N 5 HOH B 108 608 29 HOH HOH . N 5 HOH B 109 609 213 HOH HOH . N 5 HOH B 110 610 238 HOH HOH . N 5 HOH B 111 611 133 HOH HOH . N 5 HOH B 112 612 224 HOH HOH . N 5 HOH B 113 613 218 HOH HOH . N 5 HOH B 114 614 333 HOH HOH . N 5 HOH B 115 615 62 HOH HOH . N 5 HOH B 116 616 239 HOH HOH . N 5 HOH B 117 617 258 HOH HOH . N 5 HOH B 118 618 291 HOH HOH . N 5 HOH B 119 619 163 HOH HOH . N 5 HOH B 120 620 50 HOH HOH . N 5 HOH B 121 621 203 HOH HOH . N 5 HOH B 122 622 33 HOH HOH . N 5 HOH B 123 623 246 HOH HOH . N 5 HOH B 124 624 331 HOH HOH . N 5 HOH B 125 625 334 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 2 -6.247 4.028 11.832 1 46.21 ? S DMS 402 B 1 HETATM 2 O O DMS . . . J 2 -7.429 3.368 11.236 1 46.55 ? O DMS 402 B 1 HETATM 3 C C1 DMS . . . J 2 -6.637 5.732 11.715 1 46.34 ? C1 DMS 402 B 1 HETATM 4 C C2 DMS . . . J 2 -4.987 3.877 10.633 1 45.72 ? C2 DMS 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #