data_7GKL # _model_server_result.job_id 2DRhyxYz9msAZwnVKBbhHQ _model_server_result.datetime_utc '2024-11-16 07:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 7GKL # _exptl.entry_id 7GKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GKL _cell.length_a 67.34 _cell.length_b 99.58 _cell.length_c 103.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GKL _atom_sites.fract_transf_matrix[1][1] 0.01485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 403 DMS DMS . F 2 DMS A 1 404 406 DMS DMS . G 2 DMS A 1 405 407 DMS DMS . H 2 DMS A 1 406 408 DMS DMS . I 3 CL A 1 407 409 CL CL . J 4 QXX A 1 408 410 QXX LIG . K 2 DMS B 1 401 401 DMS DMS . L 2 DMS B 1 402 402 DMS DMS . M 5 HOH A 1 501 63 HOH HOH . M 5 HOH A 2 502 204 HOH HOH . M 5 HOH A 3 503 67 HOH HOH . M 5 HOH A 4 504 170 HOH HOH . M 5 HOH A 5 505 271 HOH HOH . M 5 HOH A 6 506 284 HOH HOH . M 5 HOH A 7 507 56 HOH HOH . M 5 HOH A 8 508 233 HOH HOH . M 5 HOH A 9 509 217 HOH HOH . M 5 HOH A 10 510 143 HOH HOH . M 5 HOH A 11 511 224 HOH HOH . M 5 HOH A 12 512 264 HOH HOH . M 5 HOH A 13 513 166 HOH HOH . M 5 HOH A 14 514 68 HOH HOH . M 5 HOH A 15 515 8 HOH HOH . M 5 HOH A 16 516 76 HOH HOH . M 5 HOH A 17 517 81 HOH HOH . M 5 HOH A 18 518 299 HOH HOH . M 5 HOH A 19 519 66 HOH HOH . M 5 HOH A 20 520 100 HOH HOH . M 5 HOH A 21 521 199 HOH HOH . M 5 HOH A 22 522 214 HOH HOH . M 5 HOH A 23 523 244 HOH HOH . M 5 HOH A 24 524 288 HOH HOH . M 5 HOH A 25 525 89 HOH HOH . M 5 HOH A 26 526 99 HOH HOH . M 5 HOH A 27 527 343 HOH HOH . M 5 HOH A 28 528 312 HOH HOH . M 5 HOH A 29 529 310 HOH HOH . M 5 HOH A 30 530 106 HOH HOH . M 5 HOH A 31 531 186 HOH HOH . M 5 HOH A 32 532 3 HOH HOH . M 5 HOH A 33 533 71 HOH HOH . M 5 HOH A 34 534 175 HOH HOH . M 5 HOH A 35 535 222 HOH HOH . M 5 HOH A 36 536 86 HOH HOH . M 5 HOH A 37 537 97 HOH HOH . M 5 HOH A 38 538 70 HOH HOH . M 5 HOH A 39 539 251 HOH HOH . M 5 HOH A 40 540 187 HOH HOH . M 5 HOH A 41 541 232 HOH HOH . M 5 HOH A 42 542 223 HOH HOH . M 5 HOH A 43 543 84 HOH HOH . M 5 HOH A 44 544 78 HOH HOH . M 5 HOH A 45 545 6 HOH HOH . M 5 HOH A 46 546 92 HOH HOH . M 5 HOH A 47 547 260 HOH HOH . M 5 HOH A 48 548 329 HOH HOH . M 5 HOH A 49 549 103 HOH HOH . M 5 HOH A 50 550 49 HOH HOH . M 5 HOH A 51 551 74 HOH HOH . M 5 HOH A 52 552 109 HOH HOH . M 5 HOH A 53 553 77 HOH HOH . M 5 HOH A 54 554 64 HOH HOH . M 5 HOH A 55 555 273 HOH HOH . M 5 HOH A 56 556 215 HOH HOH . M 5 HOH A 57 557 145 HOH HOH . M 5 HOH A 58 558 79 HOH HOH . M 5 HOH A 59 559 91 HOH HOH . M 5 HOH A 60 560 104 HOH HOH . M 5 HOH A 61 561 154 HOH HOH . M 5 HOH A 62 562 88 HOH HOH . M 5 HOH A 63 563 305 HOH HOH . M 5 HOH A 64 564 90 HOH HOH . M 5 HOH A 65 565 202 HOH HOH . M 5 HOH A 66 566 315 HOH HOH . M 5 HOH A 67 567 349 HOH HOH . M 5 HOH A 68 568 131 HOH HOH . M 5 HOH A 69 569 85 HOH HOH . M 5 HOH A 70 570 1 HOH HOH . M 5 HOH A 71 571 274 HOH HOH . M 5 HOH A 72 572 73 HOH HOH . M 5 HOH A 73 573 193 HOH HOH . M 5 HOH A 74 574 221 HOH HOH . M 5 HOH A 75 575 75 HOH HOH . M 5 HOH A 76 576 259 HOH HOH . M 5 HOH A 77 577 227 HOH HOH . M 5 HOH A 78 578 83 HOH HOH . M 5 HOH A 79 579 140 HOH HOH . M 5 HOH A 80 580 128 HOH HOH . M 5 HOH A 81 581 341 HOH HOH . M 5 HOH A 82 582 220 HOH HOH . M 5 HOH A 83 583 124 HOH HOH . M 5 HOH A 84 584 242 HOH HOH . M 5 HOH A 85 585 102 HOH HOH . M 5 HOH A 86 586 209 HOH HOH . M 5 HOH A 87 587 98 HOH HOH . M 5 HOH A 88 588 196 HOH HOH . M 5 HOH A 89 589 206 HOH HOH . M 5 HOH A 90 590 250 HOH HOH . M 5 HOH A 91 591 153 HOH HOH . M 5 HOH A 92 592 61 HOH HOH . M 5 HOH A 93 593 107 HOH HOH . M 5 HOH A 94 594 168 HOH HOH . M 5 HOH A 95 595 190 HOH HOH . M 5 HOH A 96 596 237 HOH HOH . M 5 HOH A 97 597 69 HOH HOH . M 5 HOH A 98 598 146 HOH HOH . M 5 HOH A 99 599 113 HOH HOH . M 5 HOH A 100 600 229 HOH HOH . M 5 HOH A 101 601 101 HOH HOH . M 5 HOH A 102 602 96 HOH HOH . M 5 HOH A 103 603 116 HOH HOH . M 5 HOH A 104 604 147 HOH HOH . M 5 HOH A 105 605 119 HOH HOH . M 5 HOH A 106 606 160 HOH HOH . M 5 HOH A 107 607 144 HOH HOH . M 5 HOH A 108 608 80 HOH HOH . M 5 HOH A 109 609 72 HOH HOH . M 5 HOH A 110 610 263 HOH HOH . M 5 HOH A 111 611 120 HOH HOH . M 5 HOH A 112 612 296 HOH HOH . M 5 HOH A 113 613 300 HOH HOH . M 5 HOH A 114 614 117 HOH HOH . M 5 HOH A 115 615 287 HOH HOH . M 5 HOH A 116 616 270 HOH HOH . M 5 HOH A 117 617 269 HOH HOH . M 5 HOH A 118 618 127 HOH HOH . M 5 HOH A 119 619 304 HOH HOH . M 5 HOH A 120 620 130 HOH HOH . M 5 HOH A 121 621 13 HOH HOH . M 5 HOH A 122 622 94 HOH HOH . M 5 HOH A 123 623 114 HOH HOH . M 5 HOH A 124 624 122 HOH HOH . M 5 HOH A 125 625 111 HOH HOH . M 5 HOH A 126 626 363 HOH HOH . M 5 HOH A 127 627 361 HOH HOH . M 5 HOH A 128 628 262 HOH HOH . M 5 HOH A 129 629 108 HOH HOH . M 5 HOH A 130 630 350 HOH HOH . M 5 HOH A 131 631 7 HOH HOH . M 5 HOH A 132 632 115 HOH HOH . M 5 HOH A 133 633 112 HOH HOH . M 5 HOH A 134 634 348 HOH HOH . M 5 HOH A 135 635 158 HOH HOH . M 5 HOH A 136 636 118 HOH HOH . M 5 HOH A 137 637 164 HOH HOH . M 5 HOH A 138 638 313 HOH HOH . M 5 HOH A 139 639 148 HOH HOH . M 5 HOH A 140 640 236 HOH HOH . M 5 HOH A 141 641 311 HOH HOH . M 5 HOH A 142 642 142 HOH HOH . M 5 HOH A 143 643 12 HOH HOH . M 5 HOH A 144 644 105 HOH HOH . M 5 HOH A 145 645 126 HOH HOH . M 5 HOH A 146 646 289 HOH HOH . M 5 HOH A 147 647 132 HOH HOH . M 5 HOH A 148 648 191 HOH HOH . M 5 HOH A 149 649 123 HOH HOH . M 5 HOH A 150 650 333 HOH HOH . M 5 HOH A 151 651 197 HOH HOH . M 5 HOH A 152 652 162 HOH HOH . M 5 HOH A 153 653 180 HOH HOH . M 5 HOH A 154 654 332 HOH HOH . M 5 HOH A 155 655 323 HOH HOH . M 5 HOH A 156 656 243 HOH HOH . M 5 HOH A 157 657 121 HOH HOH . M 5 HOH A 158 658 189 HOH HOH . M 5 HOH A 159 659 336 HOH HOH . M 5 HOH A 160 660 129 HOH HOH . M 5 HOH A 161 661 11 HOH HOH . M 5 HOH A 162 662 330 HOH HOH . M 5 HOH A 163 663 230 HOH HOH . M 5 HOH A 164 664 335 HOH HOH . M 5 HOH A 165 665 195 HOH HOH . M 5 HOH A 166 666 326 HOH HOH . M 5 HOH A 167 667 286 HOH HOH . M 5 HOH A 168 668 331 HOH HOH . M 5 HOH A 169 669 347 HOH HOH . M 5 HOH A 170 670 356 HOH HOH . M 5 HOH A 171 671 247 HOH HOH . M 5 HOH A 172 672 314 HOH HOH . M 5 HOH A 173 673 134 HOH HOH . M 5 HOH A 174 674 360 HOH HOH . M 5 HOH A 175 675 328 HOH HOH . M 5 HOH A 176 676 334 HOH HOH . M 5 HOH A 177 677 324 HOH HOH . M 5 HOH A 178 678 173 HOH HOH . M 5 HOH A 179 679 261 HOH HOH . M 5 HOH A 180 680 192 HOH HOH . M 5 HOH A 181 681 354 HOH HOH . M 5 HOH A 182 682 152 HOH HOH . M 5 HOH A 183 683 306 HOH HOH . M 5 HOH A 184 684 342 HOH HOH . M 5 HOH A 185 685 178 HOH HOH . M 5 HOH A 186 686 194 HOH HOH . M 5 HOH A 187 687 245 HOH HOH . M 5 HOH A 188 688 136 HOH HOH . M 5 HOH A 189 689 308 HOH HOH . M 5 HOH A 190 690 297 HOH HOH . M 5 HOH A 191 691 9 HOH HOH . M 5 HOH A 192 692 338 HOH HOH . M 5 HOH A 193 693 340 HOH HOH . M 5 HOH A 194 694 307 HOH HOH . M 5 HOH A 195 695 137 HOH HOH . M 5 HOH A 196 696 355 HOH HOH . M 5 HOH A 197 697 365 HOH HOH . M 5 HOH A 198 698 139 HOH HOH . M 5 HOH A 199 699 135 HOH HOH . M 5 HOH A 200 700 359 HOH HOH . M 5 HOH A 201 701 141 HOH HOH . M 5 HOH A 202 702 138 HOH HOH . M 5 HOH A 203 703 252 HOH HOH . M 5 HOH A 204 704 177 HOH HOH . M 5 HOH A 205 705 327 HOH HOH . M 5 HOH A 206 706 337 HOH HOH . N 5 HOH B 1 501 345 HOH HOH . N 5 HOH B 2 502 174 HOH HOH . N 5 HOH B 3 503 339 HOH HOH . N 5 HOH B 4 504 216 HOH HOH . N 5 HOH B 5 505 293 HOH HOH . N 5 HOH B 6 506 16 HOH HOH . N 5 HOH B 7 507 290 HOH HOH . N 5 HOH B 8 508 253 HOH HOH . N 5 HOH B 9 509 171 HOH HOH . N 5 HOH B 10 510 38 HOH HOH . N 5 HOH B 11 511 278 HOH HOH . N 5 HOH B 12 512 357 HOH HOH . N 5 HOH B 13 513 18 HOH HOH . N 5 HOH B 14 514 176 HOH HOH . N 5 HOH B 15 515 27 HOH HOH . N 5 HOH B 16 516 280 HOH HOH . N 5 HOH B 17 517 28 HOH HOH . N 5 HOH B 18 518 53 HOH HOH . N 5 HOH B 19 519 352 HOH HOH . N 5 HOH B 20 520 110 HOH HOH . N 5 HOH B 21 521 15 HOH HOH . N 5 HOH B 22 522 268 HOH HOH . N 5 HOH B 23 523 22 HOH HOH . N 5 HOH B 24 524 294 HOH HOH . N 5 HOH B 25 525 228 HOH HOH . N 5 HOH B 26 526 21 HOH HOH . N 5 HOH B 27 527 37 HOH HOH . N 5 HOH B 28 528 207 HOH HOH . N 5 HOH B 29 529 179 HOH HOH . N 5 HOH B 30 530 295 HOH HOH . N 5 HOH B 31 531 14 HOH HOH . N 5 HOH B 32 532 23 HOH HOH . N 5 HOH B 33 533 256 HOH HOH . N 5 HOH B 34 534 225 HOH HOH . N 5 HOH B 35 535 19 HOH HOH . N 5 HOH B 36 536 42 HOH HOH . N 5 HOH B 37 537 318 HOH HOH . N 5 HOH B 38 538 277 HOH HOH . N 5 HOH B 39 539 35 HOH HOH . N 5 HOH B 40 540 255 HOH HOH . N 5 HOH B 41 541 30 HOH HOH . N 5 HOH B 42 542 31 HOH HOH . N 5 HOH B 43 543 24 HOH HOH . N 5 HOH B 44 544 266 HOH HOH . N 5 HOH B 45 545 151 HOH HOH . N 5 HOH B 46 546 20 HOH HOH . N 5 HOH B 47 547 45 HOH HOH . N 5 HOH B 48 548 279 HOH HOH . N 5 HOH B 49 549 54 HOH HOH . N 5 HOH B 50 550 44 HOH HOH . N 5 HOH B 51 551 346 HOH HOH . N 5 HOH B 52 552 149 HOH HOH . N 5 HOH B 53 553 157 HOH HOH . N 5 HOH B 54 554 358 HOH HOH . N 5 HOH B 55 555 34 HOH HOH . N 5 HOH B 56 556 41 HOH HOH . N 5 HOH B 57 557 25 HOH HOH . N 5 HOH B 58 558 231 HOH HOH . N 5 HOH B 59 559 36 HOH HOH . N 5 HOH B 60 560 257 HOH HOH . N 5 HOH B 61 561 52 HOH HOH . N 5 HOH B 62 562 55 HOH HOH . N 5 HOH B 63 563 32 HOH HOH . N 5 HOH B 64 564 4 HOH HOH . N 5 HOH B 65 565 82 HOH HOH . N 5 HOH B 66 566 39 HOH HOH . N 5 HOH B 67 567 125 HOH HOH . N 5 HOH B 68 568 5 HOH HOH . N 5 HOH B 69 569 93 HOH HOH . N 5 HOH B 70 570 185 HOH HOH . N 5 HOH B 71 571 213 HOH HOH . N 5 HOH B 72 572 48 HOH HOH . N 5 HOH B 73 573 155 HOH HOH . N 5 HOH B 74 574 161 HOH HOH . N 5 HOH B 75 575 87 HOH HOH . N 5 HOH B 76 576 156 HOH HOH . N 5 HOH B 77 577 46 HOH HOH . N 5 HOH B 78 578 235 HOH HOH . N 5 HOH B 79 579 200 HOH HOH . N 5 HOH B 80 580 51 HOH HOH . N 5 HOH B 81 581 57 HOH HOH . N 5 HOH B 82 582 325 HOH HOH . N 5 HOH B 83 583 240 HOH HOH . N 5 HOH B 84 584 59 HOH HOH . N 5 HOH B 85 585 292 HOH HOH . N 5 HOH B 86 586 321 HOH HOH . N 5 HOH B 87 587 212 HOH HOH . N 5 HOH B 88 588 43 HOH HOH . N 5 HOH B 89 589 58 HOH HOH . N 5 HOH B 90 590 344 HOH HOH . N 5 HOH B 91 591 60 HOH HOH . N 5 HOH B 92 592 258 HOH HOH . N 5 HOH B 93 593 40 HOH HOH . N 5 HOH B 94 594 351 HOH HOH . N 5 HOH B 95 595 2 HOH HOH . N 5 HOH B 96 596 210 HOH HOH . N 5 HOH B 97 597 165 HOH HOH . N 5 HOH B 98 598 167 HOH HOH . N 5 HOH B 99 599 159 HOH HOH . N 5 HOH B 100 600 201 HOH HOH . N 5 HOH B 101 601 226 HOH HOH . N 5 HOH B 102 602 29 HOH HOH . N 5 HOH B 103 603 265 HOH HOH . N 5 HOH B 104 604 302 HOH HOH . N 5 HOH B 105 605 316 HOH HOH . N 5 HOH B 106 606 254 HOH HOH . N 5 HOH B 107 607 353 HOH HOH . N 5 HOH B 108 608 317 HOH HOH . N 5 HOH B 109 609 362 HOH HOH . N 5 HOH B 110 610 320 HOH HOH . N 5 HOH B 111 611 364 HOH HOH . N 5 HOH B 112 612 62 HOH HOH . N 5 HOH B 113 613 238 HOH HOH . N 5 HOH B 114 614 184 HOH HOH . N 5 HOH B 115 615 33 HOH HOH . N 5 HOH B 116 616 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . L 2 -2.618 6.237 25.46 1 100.96 ? S DMS 402 B 1 HETATM 2 O O DMS . . . L 2 -4.036 6.623 25.553 1 100.95 ? O DMS 402 B 1 HETATM 3 C C1 DMS . . . L 2 -1.993 6.533 27.09 1 100.98 ? C1 DMS 402 B 1 HETATM 4 C C2 DMS . . . L 2 -2.628 4.463 25.501 1 100.91 ? C2 DMS 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #