data_7GKR # _model_server_result.job_id 3MNPePhLY4DjvYq0yxOJHA _model_server_result.datetime_utc '2024-11-21 08:47:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":405}' # _entry.id 7GKR # _exptl.entry_id 7GKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GKR _cell.length_a 67.77 _cell.length_b 100.09 _cell.length_c 104.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GKR _atom_sites.fract_transf_matrix[1][1] 0.014756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 403 DMS DMS . F 2 DMS A 1 404 406 DMS DMS . G 2 DMS A 1 405 407 DMS DMS . H 2 DMS A 1 406 408 DMS DMS . I 3 CL A 1 407 409 CL CL . J 4 QZC A 1 408 410 QZC LIG . K 2 DMS A 1 409 405 DMS DMS . L 2 DMS A 1 410 346 DMS DMS . M 2 DMS B 1 401 401 DMS DMS . N 2 DMS B 1 402 402 DMS DMS . O 4 QZC B 1 403 403 QZC LIG . P 2 DMS B 1 404 404 DMS DMS . Q 2 DMS B 1 405 406 DMS DMS . R 5 HOH A 1 501 315 HOH HOH . R 5 HOH A 2 502 196 HOH HOH . R 5 HOH A 3 503 321 HOH HOH . R 5 HOH A 4 504 143 HOH HOH . R 5 HOH A 5 505 67 HOH HOH . R 5 HOH A 6 506 288 HOH HOH . R 5 HOH A 7 507 166 HOH HOH . R 5 HOH A 8 508 328 HOH HOH . R 5 HOH A 9 509 68 HOH HOH . R 5 HOH A 10 510 56 HOH HOH . R 5 HOH A 11 511 66 HOH HOH . R 5 HOH A 12 512 233 HOH HOH . R 5 HOH A 13 513 284 HOH HOH . R 5 HOH A 14 514 299 HOH HOH . R 5 HOH A 15 515 199 HOH HOH . R 5 HOH A 16 516 204 HOH HOH . R 5 HOH A 17 517 264 HOH HOH . R 5 HOH A 18 518 76 HOH HOH . R 5 HOH A 19 519 251 HOH HOH . R 5 HOH A 20 520 301 HOH HOH . R 5 HOH A 21 521 217 HOH HOH . R 5 HOH A 22 522 74 HOH HOH . R 5 HOH A 23 523 99 HOH HOH . R 5 HOH A 24 524 224 HOH HOH . R 5 HOH A 25 525 92 HOH HOH . R 5 HOH A 26 526 274 HOH HOH . R 5 HOH A 27 527 244 HOH HOH . R 5 HOH A 28 528 86 HOH HOH . R 5 HOH A 29 529 106 HOH HOH . R 5 HOH A 30 530 100 HOH HOH . R 5 HOH A 31 531 70 HOH HOH . R 5 HOH A 32 532 109 HOH HOH . R 5 HOH A 33 533 259 HOH HOH . R 5 HOH A 34 534 81 HOH HOH . R 5 HOH A 35 535 310 HOH HOH . R 5 HOH A 36 536 1001 HOH HOH . R 5 HOH A 37 537 223 HOH HOH . R 5 HOH A 38 538 222 HOH HOH . R 5 HOH A 39 539 187 HOH HOH . R 5 HOH A 40 540 175 HOH HOH . R 5 HOH A 41 541 186 HOH HOH . R 5 HOH A 42 542 103 HOH HOH . R 5 HOH A 43 543 71 HOH HOH . R 5 HOH A 44 544 89 HOH HOH . R 5 HOH A 45 545 104 HOH HOH . R 5 HOH A 46 546 283 HOH HOH . R 5 HOH A 47 547 78 HOH HOH . R 5 HOH A 48 548 88 HOH HOH . R 5 HOH A 49 549 79 HOH HOH . R 5 HOH A 50 550 215 HOH HOH . R 5 HOH A 51 551 97 HOH HOH . R 5 HOH A 52 552 73 HOH HOH . R 5 HOH A 53 553 75 HOH HOH . R 5 HOH A 54 554 8 HOH HOH . R 5 HOH A 55 555 96 HOH HOH . R 5 HOH A 56 556 140 HOH HOH . R 5 HOH A 57 557 273 HOH HOH . R 5 HOH A 58 558 83 HOH HOH . R 5 HOH A 59 559 317 HOH HOH . R 5 HOH A 60 560 128 HOH HOH . R 5 HOH A 61 561 64 HOH HOH . R 5 HOH A 62 562 85 HOH HOH . R 5 HOH A 63 563 84 HOH HOH . R 5 HOH A 64 564 220 HOH HOH . R 5 HOH A 65 565 168 HOH HOH . R 5 HOH A 66 566 227 HOH HOH . R 5 HOH A 67 567 117 HOH HOH . R 5 HOH A 68 568 193 HOH HOH . R 5 HOH A 69 569 131 HOH HOH . R 5 HOH A 70 570 250 HOH HOH . R 5 HOH A 71 571 235 HOH HOH . R 5 HOH A 72 572 214 HOH HOH . R 5 HOH A 73 573 331 HOH HOH . R 5 HOH A 74 574 153 HOH HOH . R 5 HOH A 75 575 237 HOH HOH . R 5 HOH A 76 576 232 HOH HOH . R 5 HOH A 77 577 90 HOH HOH . R 5 HOH A 78 578 91 HOH HOH . R 5 HOH A 79 579 300 HOH HOH . R 5 HOH A 80 580 102 HOH HOH . R 5 HOH A 81 581 145 HOH HOH . R 5 HOH A 82 582 98 HOH HOH . R 5 HOH A 83 583 125 HOH HOH . R 5 HOH A 84 584 270 HOH HOH . R 5 HOH A 85 585 107 HOH HOH . R 5 HOH A 86 586 105 HOH HOH . R 5 HOH A 87 587 147 HOH HOH . R 5 HOH A 88 588 305 HOH HOH . R 5 HOH A 89 589 72 HOH HOH . R 5 HOH A 90 590 80 HOH HOH . R 5 HOH A 91 591 221 HOH HOH . R 5 HOH A 92 592 160 HOH HOH . R 5 HOH A 93 593 263 HOH HOH . R 5 HOH A 94 594 148 HOH HOH . R 5 HOH A 95 595 1 HOH HOH . R 5 HOH A 96 596 304 HOH HOH . R 5 HOH A 97 597 111 HOH HOH . R 5 HOH A 98 598 113 HOH HOH . R 5 HOH A 99 599 119 HOH HOH . R 5 HOH A 100 600 116 HOH HOH . R 5 HOH A 101 601 124 HOH HOH . R 5 HOH A 102 602 12 HOH HOH . R 5 HOH A 103 603 190 HOH HOH . R 5 HOH A 104 604 101 HOH HOH . R 5 HOH A 105 605 120 HOH HOH . R 5 HOH A 106 606 130 HOH HOH . R 5 HOH A 107 607 69 HOH HOH . R 5 HOH A 108 608 324 HOH HOH . R 5 HOH A 109 609 262 HOH HOH . R 5 HOH A 110 610 146 HOH HOH . R 5 HOH A 111 611 229 HOH HOH . R 5 HOH A 112 612 112 HOH HOH . R 5 HOH A 113 613 115 HOH HOH . R 5 HOH A 114 614 158 HOH HOH . R 5 HOH A 115 615 269 HOH HOH . R 5 HOH A 116 616 108 HOH HOH . R 5 HOH A 117 617 7 HOH HOH . R 5 HOH A 118 618 209 HOH HOH . R 5 HOH A 119 619 114 HOH HOH . R 5 HOH A 120 620 122 HOH HOH . R 5 HOH A 121 621 129 HOH HOH . R 5 HOH A 122 622 126 HOH HOH . R 5 HOH A 123 623 336 HOH HOH . R 5 HOH A 124 624 127 HOH HOH . R 5 HOH A 125 625 332 HOH HOH . R 5 HOH A 126 626 180 HOH HOH . R 5 HOH A 127 627 191 HOH HOH . R 5 HOH A 128 628 142 HOH HOH . R 5 HOH A 129 629 150 HOH HOH . R 5 HOH A 130 630 118 HOH HOH . R 5 HOH A 131 631 318 HOH HOH . R 5 HOH A 132 632 94 HOH HOH . R 5 HOH A 133 633 6 HOH HOH . R 5 HOH A 134 634 132 HOH HOH . R 5 HOH A 135 635 162 HOH HOH . R 5 HOH A 136 636 189 HOH HOH . R 5 HOH A 137 637 197 HOH HOH . R 5 HOH A 138 638 13 HOH HOH . R 5 HOH A 139 639 320 HOH HOH . R 5 HOH A 140 640 230 HOH HOH . R 5 HOH A 141 641 344 HOH HOH . R 5 HOH A 142 642 11 HOH HOH . R 5 HOH A 143 643 182 HOH HOH . R 5 HOH A 144 644 323 HOH HOH . R 5 HOH A 145 645 243 HOH HOH . R 5 HOH A 146 646 345 HOH HOH . R 5 HOH A 147 647 206 HOH HOH . R 5 HOH A 148 648 134 HOH HOH . R 5 HOH A 149 649 123 HOH HOH . R 5 HOH A 150 650 322 HOH HOH . R 5 HOH A 151 651 306 HOH HOH . R 5 HOH A 152 652 247 HOH HOH . R 5 HOH A 153 653 152 HOH HOH . R 5 HOH A 154 654 319 HOH HOH . R 5 HOH A 155 655 192 HOH HOH . R 5 HOH A 156 656 184 HOH HOH . R 5 HOH A 157 657 297 HOH HOH . R 5 HOH A 158 658 173 HOH HOH . R 5 HOH A 159 659 178 HOH HOH . R 5 HOH A 160 660 1005 HOH HOH . R 5 HOH A 161 661 245 HOH HOH . R 5 HOH A 162 662 136 HOH HOH . R 5 HOH A 163 663 194 HOH HOH . R 5 HOH A 164 664 205 HOH HOH . R 5 HOH A 165 665 307 HOH HOH . R 5 HOH A 166 666 139 HOH HOH . R 5 HOH A 167 667 316 HOH HOH . R 5 HOH A 168 668 249 HOH HOH . R 5 HOH A 169 669 9 HOH HOH . R 5 HOH A 170 670 137 HOH HOH . R 5 HOH A 171 671 135 HOH HOH . R 5 HOH A 172 672 141 HOH HOH . R 5 HOH A 173 673 177 HOH HOH . R 5 HOH A 174 674 138 HOH HOH . R 5 HOH A 175 675 252 HOH HOH . S 5 HOH B 1 501 333 HOH HOH . S 5 HOH B 2 502 18 HOH HOH . S 5 HOH B 3 503 174 HOH HOH . S 5 HOH B 4 504 293 HOH HOH . S 5 HOH B 5 505 337 HOH HOH . S 5 HOH B 6 506 309 HOH HOH . S 5 HOH B 7 507 334 HOH HOH . S 5 HOH B 8 508 216 HOH HOH . S 5 HOH B 9 509 110 HOH HOH . S 5 HOH B 10 510 21 HOH HOH . S 5 HOH B 11 511 15 HOH HOH . S 5 HOH B 12 512 16 HOH HOH . S 5 HOH B 13 513 295 HOH HOH . S 5 HOH B 14 514 313 HOH HOH . S 5 HOH B 15 515 312 HOH HOH . S 5 HOH B 16 516 176 HOH HOH . S 5 HOH B 17 517 28 HOH HOH . S 5 HOH B 18 518 38 HOH HOH . S 5 HOH B 19 519 278 HOH HOH . S 5 HOH B 20 520 294 HOH HOH . S 5 HOH B 21 521 19 HOH HOH . S 5 HOH B 22 522 338 HOH HOH . S 5 HOH B 23 523 27 HOH HOH . S 5 HOH B 24 524 341 HOH HOH . S 5 HOH B 25 525 22 HOH HOH . S 5 HOH B 26 526 156 HOH HOH . S 5 HOH B 27 527 256 HOH HOH . S 5 HOH B 28 528 31 HOH HOH . S 5 HOH B 29 529 157 HOH HOH . S 5 HOH B 30 530 30 HOH HOH . S 5 HOH B 31 531 57 HOH HOH . S 5 HOH B 32 532 45 HOH HOH . S 5 HOH B 33 533 268 HOH HOH . S 5 HOH B 34 534 42 HOH HOH . S 5 HOH B 35 535 14 HOH HOH . S 5 HOH B 36 536 149 HOH HOH . S 5 HOH B 37 537 279 HOH HOH . S 5 HOH B 38 538 179 HOH HOH . S 5 HOH B 39 539 35 HOH HOH . S 5 HOH B 40 540 24 HOH HOH . S 5 HOH B 41 541 37 HOH HOH . S 5 HOH B 42 542 39 HOH HOH . S 5 HOH B 43 543 23 HOH HOH . S 5 HOH B 44 544 36 HOH HOH . S 5 HOH B 45 545 225 HOH HOH . S 5 HOH B 46 546 34 HOH HOH . S 5 HOH B 47 547 55 HOH HOH . S 5 HOH B 48 548 329 HOH HOH . S 5 HOH B 49 549 44 HOH HOH . S 5 HOH B 50 550 93 HOH HOH . S 5 HOH B 51 551 54 HOH HOH . S 5 HOH B 52 552 325 HOH HOH . S 5 HOH B 53 553 41 HOH HOH . S 5 HOH B 54 554 32 HOH HOH . S 5 HOH B 55 555 231 HOH HOH . S 5 HOH B 56 556 151 HOH HOH . S 5 HOH B 57 557 185 HOH HOH . S 5 HOH B 58 558 200 HOH HOH . S 5 HOH B 59 559 49 HOH HOH . S 5 HOH B 60 560 155 HOH HOH . S 5 HOH B 61 561 207 HOH HOH . S 5 HOH B 62 562 266 HOH HOH . S 5 HOH B 63 563 161 HOH HOH . S 5 HOH B 64 564 25 HOH HOH . S 5 HOH B 65 565 4 HOH HOH . S 5 HOH B 66 566 82 HOH HOH . S 5 HOH B 67 567 339 HOH HOH . S 5 HOH B 68 568 61 HOH HOH . S 5 HOH B 69 569 51 HOH HOH . S 5 HOH B 70 570 1006 HOH HOH . S 5 HOH B 71 571 87 HOH HOH . S 5 HOH B 72 572 1002 HOH HOH . S 5 HOH B 73 573 52 HOH HOH . S 5 HOH B 74 574 2 HOH HOH . S 5 HOH B 75 575 327 HOH HOH . S 5 HOH B 76 576 5 HOH HOH . S 5 HOH B 77 577 48 HOH HOH . S 5 HOH B 78 578 58 HOH HOH . S 5 HOH B 79 579 210 HOH HOH . S 5 HOH B 80 580 46 HOH HOH . S 5 HOH B 81 581 343 HOH HOH . S 5 HOH B 82 582 43 HOH HOH . S 5 HOH B 83 583 1004 HOH HOH . S 5 HOH B 84 584 59 HOH HOH . S 5 HOH B 85 585 330 HOH HOH . S 5 HOH B 86 586 1003 HOH HOH . S 5 HOH B 87 587 40 HOH HOH . S 5 HOH B 88 588 60 HOH HOH . S 5 HOH B 89 589 212 HOH HOH . S 5 HOH B 90 590 240 HOH HOH . S 5 HOH B 91 591 195 HOH HOH . S 5 HOH B 92 592 311 HOH HOH . S 5 HOH B 93 593 254 HOH HOH . S 5 HOH B 94 594 226 HOH HOH . S 5 HOH B 95 595 265 HOH HOH . S 5 HOH B 96 596 340 HOH HOH . S 5 HOH B 97 597 201 HOH HOH . S 5 HOH B 98 598 165 HOH HOH . S 5 HOH B 99 599 238 HOH HOH . S 5 HOH B 100 600 342 HOH HOH . S 5 HOH B 101 601 62 HOH HOH . S 5 HOH B 102 602 335 HOH HOH . S 5 HOH B 103 603 326 HOH HOH . S 5 HOH B 104 604 314 HOH HOH . S 5 HOH B 105 605 33 HOH HOH . S 5 HOH B 106 606 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . Q 2 -7.017 -18.129 1.445 1 90.84 ? S DMS 405 B 1 HETATM 2 O O DMS . . . Q 2 -5.769 -18.693 1.983 1 90.77 ? O DMS 405 B 1 HETATM 3 C C1 DMS . . . Q 2 -6.498 -16.99 0.201 1 90.69 ? C1 DMS 405 B 1 HETATM 4 C C2 DMS . . . Q 2 -7.54 -16.984 2.673 1 90.76 ? C2 DMS 405 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 432 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 4 #