data_7GKX # _model_server_result.job_id 8UZSPO8DnTkjP038d-lKTQ _model_server_result.datetime_utc '2024-11-21 08:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7GKX # _exptl.entry_id 7GKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GKX _cell.length_a 67.85 _cell.length_b 100.212 _cell.length_c 104.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GKX _atom_sites.fract_transf_matrix[1][1] 0.014738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 406 DMS DMS . F 2 DMS A 1 404 407 DMS DMS . G 2 DMS A 1 405 408 DMS DMS . H 3 CL A 1 406 409 CL CL . I 4 R1I A 1 407 501 R1I LIG . J 2 DMS B 1 401 401 DMS DMS . K 2 DMS B 1 402 402 DMS DMS . L 5 HOH A 1 501 154 HOH HOH . L 5 HOH A 2 502 65 HOH HOH . L 5 HOH A 3 503 63 HOH HOH . L 5 HOH A 4 504 204 HOH HOH . L 5 HOH A 5 505 271 HOH HOH . L 5 HOH A 6 506 170 HOH HOH . L 5 HOH A 7 507 199 HOH HOH . L 5 HOH A 8 508 77 HOH HOH . L 5 HOH A 9 509 68 HOH HOH . L 5 HOH A 10 510 74 HOH HOH . L 5 HOH A 11 511 260 HOH HOH . L 5 HOH A 12 512 78 HOH HOH . L 5 HOH A 13 513 66 HOH HOH . L 5 HOH A 14 514 217 HOH HOH . L 5 HOH A 15 515 166 HOH HOH . L 5 HOH A 16 516 264 HOH HOH . L 5 HOH A 17 517 76 HOH HOH . L 5 HOH A 18 518 304 HOH HOH . L 5 HOH A 19 519 263 HOH HOH . L 5 HOH A 20 520 284 HOH HOH . L 5 HOH A 21 521 143 HOH HOH . L 5 HOH A 22 522 233 HOH HOH . L 5 HOH A 23 523 236 HOH HOH . L 5 HOH A 24 524 81 HOH HOH . L 5 HOH A 25 525 224 HOH HOH . L 5 HOH A 26 526 96 HOH HOH . L 5 HOH A 27 527 244 HOH HOH . L 5 HOH A 28 528 75 HOH HOH . L 5 HOH A 29 529 223 HOH HOH . L 5 HOH A 30 530 310 HOH HOH . L 5 HOH A 31 531 49 HOH HOH . L 5 HOH A 32 532 85 HOH HOH . L 5 HOH A 33 533 6 HOH HOH . L 5 HOH A 34 534 249 HOH HOH . L 5 HOH A 35 535 187 HOH HOH . L 5 HOH A 36 536 89 HOH HOH . L 5 HOH A 37 537 111 HOH HOH . L 5 HOH A 38 538 274 HOH HOH . L 5 HOH A 39 539 99 HOH HOH . L 5 HOH A 40 540 140 HOH HOH . L 5 HOH A 41 541 251 HOH HOH . L 5 HOH A 42 542 67 HOH HOH . L 5 HOH A 43 543 64 HOH HOH . L 5 HOH A 44 544 86 HOH HOH . L 5 HOH A 45 545 73 HOH HOH . L 5 HOH A 46 546 109 HOH HOH . L 5 HOH A 47 547 221 HOH HOH . L 5 HOH A 48 548 103 HOH HOH . L 5 HOH A 49 549 303 HOH HOH . L 5 HOH A 50 550 70 HOH HOH . L 5 HOH A 51 551 186 HOH HOH . L 5 HOH A 52 552 242 HOH HOH . L 5 HOH A 53 553 222 HOH HOH . L 5 HOH A 54 554 145 HOH HOH . L 5 HOH A 55 555 131 HOH HOH . L 5 HOH A 56 556 88 HOH HOH . L 5 HOH A 57 557 202 HOH HOH . L 5 HOH A 58 558 288 HOH HOH . L 5 HOH A 59 559 214 HOH HOH . L 5 HOH A 60 560 209 HOH HOH . L 5 HOH A 61 561 175 HOH HOH . L 5 HOH A 62 562 95 HOH HOH . L 5 HOH A 63 563 104 HOH HOH . L 5 HOH A 64 564 98 HOH HOH . L 5 HOH A 65 565 8 HOH HOH . L 5 HOH A 66 566 90 HOH HOH . L 5 HOH A 67 567 153 HOH HOH . L 5 HOH A 68 568 220 HOH HOH . L 5 HOH A 69 569 97 HOH HOH . L 5 HOH A 70 570 92 HOH HOH . L 5 HOH A 71 571 83 HOH HOH . L 5 HOH A 72 572 168 HOH HOH . L 5 HOH A 73 573 94 HOH HOH . L 5 HOH A 74 574 164 HOH HOH . L 5 HOH A 75 575 237 HOH HOH . L 5 HOH A 76 576 117 HOH HOH . L 5 HOH A 77 577 215 HOH HOH . L 5 HOH A 78 578 40 HOH HOH . L 5 HOH A 79 579 207 HOH HOH . L 5 HOH A 80 580 227 HOH HOH . L 5 HOH A 81 581 273 HOH HOH . L 5 HOH A 82 582 235 HOH HOH . L 5 HOH A 83 583 262 HOH HOH . L 5 HOH A 84 584 102 HOH HOH . L 5 HOH A 85 585 61 HOH HOH . L 5 HOH A 86 586 250 HOH HOH . L 5 HOH A 87 587 312 HOH HOH . L 5 HOH A 88 588 101 HOH HOH . L 5 HOH A 89 589 119 HOH HOH . L 5 HOH A 90 590 71 HOH HOH . L 5 HOH A 91 591 1 HOH HOH . L 5 HOH A 92 592 125 HOH HOH . L 5 HOH A 93 593 100 HOH HOH . L 5 HOH A 94 594 124 HOH HOH . L 5 HOH A 95 595 289 HOH HOH . L 5 HOH A 96 596 12 HOH HOH . L 5 HOH A 97 597 69 HOH HOH . L 5 HOH A 98 598 196 HOH HOH . L 5 HOH A 99 599 299 HOH HOH . L 5 HOH A 100 600 130 HOH HOH . L 5 HOH A 101 601 302 HOH HOH . L 5 HOH A 102 602 128 HOH HOH . L 5 HOH A 103 603 113 HOH HOH . L 5 HOH A 104 604 79 HOH HOH . L 5 HOH A 105 605 105 HOH HOH . L 5 HOH A 106 606 72 HOH HOH . L 5 HOH A 107 607 120 HOH HOH . L 5 HOH A 108 608 106 HOH HOH . L 5 HOH A 109 609 270 HOH HOH . L 5 HOH A 110 610 158 HOH HOH . L 5 HOH A 111 611 300 HOH HOH . L 5 HOH A 112 612 269 HOH HOH . L 5 HOH A 113 613 147 HOH HOH . L 5 HOH A 114 614 313 HOH HOH . L 5 HOH A 115 615 142 HOH HOH . L 5 HOH A 116 616 80 HOH HOH . L 5 HOH A 117 617 107 HOH HOH . L 5 HOH A 118 618 114 HOH HOH . L 5 HOH A 119 619 229 HOH HOH . L 5 HOH A 120 620 160 HOH HOH . L 5 HOH A 121 621 122 HOH HOH . L 5 HOH A 122 622 5 HOH HOH . L 5 HOH A 123 623 162 HOH HOH . L 5 HOH A 124 624 146 HOH HOH . L 5 HOH A 125 625 150 HOH HOH . L 5 HOH A 126 626 282 HOH HOH . L 5 HOH A 127 627 182 HOH HOH . L 5 HOH A 128 628 112 HOH HOH . L 5 HOH A 129 629 219 HOH HOH . L 5 HOH A 130 630 115 HOH HOH . L 5 HOH A 131 631 189 HOH HOH . L 5 HOH A 132 632 296 HOH HOH . L 5 HOH A 133 633 148 HOH HOH . L 5 HOH A 134 634 172 HOH HOH . L 5 HOH A 135 635 87 HOH HOH . L 5 HOH A 136 636 243 HOH HOH . L 5 HOH A 137 637 129 HOH HOH . L 5 HOH A 138 638 254 HOH HOH . L 5 HOH A 139 639 127 HOH HOH . L 5 HOH A 140 640 116 HOH HOH . L 5 HOH A 141 641 133 HOH HOH . L 5 HOH A 142 642 126 HOH HOH . L 5 HOH A 143 643 232 HOH HOH . L 5 HOH A 144 644 11 HOH HOH . L 5 HOH A 145 645 7 HOH HOH . L 5 HOH A 146 646 190 HOH HOH . L 5 HOH A 147 647 230 HOH HOH . L 5 HOH A 148 648 108 HOH HOH . L 5 HOH A 149 649 206 HOH HOH . L 5 HOH A 150 650 123 HOH HOH . L 5 HOH A 151 651 301 HOH HOH . L 5 HOH A 152 652 132 HOH HOH . L 5 HOH A 153 653 13 HOH HOH . L 5 HOH A 154 654 121 HOH HOH . L 5 HOH A 155 655 144 HOH HOH . L 5 HOH A 156 656 193 HOH HOH . L 5 HOH A 157 657 118 HOH HOH . L 5 HOH A 158 658 180 HOH HOH . L 5 HOH A 159 659 287 HOH HOH . L 5 HOH A 160 660 191 HOH HOH . L 5 HOH A 161 661 234 HOH HOH . L 5 HOH A 162 662 134 HOH HOH . L 5 HOH A 163 663 247 HOH HOH . L 5 HOH A 164 664 315 HOH HOH . L 5 HOH A 165 665 197 HOH HOH . L 5 HOH A 166 666 311 HOH HOH . L 5 HOH A 167 667 314 HOH HOH . L 5 HOH A 168 668 184 HOH HOH . L 5 HOH A 169 669 275 HOH HOH . L 5 HOH A 170 670 192 HOH HOH . L 5 HOH A 171 671 261 HOH HOH . L 5 HOH A 172 672 306 HOH HOH . L 5 HOH A 173 673 198 HOH HOH . L 5 HOH A 174 674 205 HOH HOH . L 5 HOH A 175 675 152 HOH HOH . L 5 HOH A 176 676 297 HOH HOH . L 5 HOH A 177 677 173 HOH HOH . L 5 HOH A 178 678 245 HOH HOH . L 5 HOH A 179 679 137 HOH HOH . L 5 HOH A 180 680 84 HOH HOH . L 5 HOH A 181 681 9 HOH HOH . L 5 HOH A 182 682 135 HOH HOH . L 5 HOH A 183 683 178 HOH HOH . L 5 HOH A 184 684 136 HOH HOH . L 5 HOH A 185 685 208 HOH HOH . L 5 HOH A 186 686 308 HOH HOH . L 5 HOH A 187 687 286 HOH HOH . L 5 HOH A 188 688 139 HOH HOH . L 5 HOH A 189 689 188 HOH HOH . L 5 HOH A 190 690 177 HOH HOH . L 5 HOH A 191 691 283 HOH HOH . L 5 HOH A 192 692 252 HOH HOH . L 5 HOH A 193 693 307 HOH HOH . L 5 HOH A 194 694 267 HOH HOH . L 5 HOH A 195 695 138 HOH HOH . L 5 HOH A 196 696 248 HOH HOH . L 5 HOH A 197 697 141 HOH HOH . M 5 HOH B 1 501 183 HOH HOH . M 5 HOH B 2 502 174 HOH HOH . M 5 HOH B 3 503 42 HOH HOH . M 5 HOH B 4 504 295 HOH HOH . M 5 HOH B 5 505 171 HOH HOH . M 5 HOH B 6 506 293 HOH HOH . M 5 HOH B 7 507 216 HOH HOH . M 5 HOH B 8 508 290 HOH HOH . M 5 HOH B 9 509 18 HOH HOH . M 5 HOH B 10 510 268 HOH HOH . M 5 HOH B 11 511 21 HOH HOH . M 5 HOH B 12 512 27 HOH HOH . M 5 HOH B 13 513 20 HOH HOH . M 5 HOH B 14 514 169 HOH HOH . M 5 HOH B 15 515 26 HOH HOH . M 5 HOH B 16 516 149 HOH HOH . M 5 HOH B 17 517 28 HOH HOH . M 5 HOH B 18 518 38 HOH HOH . M 5 HOH B 19 519 22 HOH HOH . M 5 HOH B 20 520 16 HOH HOH . M 5 HOH B 21 521 35 HOH HOH . M 5 HOH B 22 522 45 HOH HOH . M 5 HOH B 23 523 253 HOH HOH . M 5 HOH B 24 524 255 HOH HOH . M 5 HOH B 25 525 15 HOH HOH . M 5 HOH B 26 526 110 HOH HOH . M 5 HOH B 27 527 31 HOH HOH . M 5 HOH B 28 528 294 HOH HOH . M 5 HOH B 29 529 37 HOH HOH . M 5 HOH B 30 530 24 HOH HOH . M 5 HOH B 31 531 228 HOH HOH . M 5 HOH B 32 532 23 HOH HOH . M 5 HOH B 33 533 91 HOH HOH . M 5 HOH B 34 534 279 HOH HOH . M 5 HOH B 35 535 14 HOH HOH . M 5 HOH B 36 536 278 HOH HOH . M 5 HOH B 37 537 176 HOH HOH . M 5 HOH B 38 538 157 HOH HOH . M 5 HOH B 39 539 179 HOH HOH . M 5 HOH B 40 540 30 HOH HOH . M 5 HOH B 41 541 281 HOH HOH . M 5 HOH B 42 542 56 HOH HOH . M 5 HOH B 43 543 19 HOH HOH . M 5 HOH B 44 544 47 HOH HOH . M 5 HOH B 45 545 155 HOH HOH . M 5 HOH B 46 546 93 HOH HOH . M 5 HOH B 47 547 36 HOH HOH . M 5 HOH B 48 548 200 HOH HOH . M 5 HOH B 49 549 3 HOH HOH . M 5 HOH B 50 550 44 HOH HOH . M 5 HOH B 51 551 231 HOH HOH . M 5 HOH B 52 552 34 HOH HOH . M 5 HOH B 53 553 256 HOH HOH . M 5 HOH B 54 554 185 HOH HOH . M 5 HOH B 55 555 57 HOH HOH . M 5 HOH B 56 556 54 HOH HOH . M 5 HOH B 57 557 55 HOH HOH . M 5 HOH B 58 558 156 HOH HOH . M 5 HOH B 59 559 211 HOH HOH . M 5 HOH B 60 560 59 HOH HOH . M 5 HOH B 61 561 41 HOH HOH . M 5 HOH B 62 562 39 HOH HOH . M 5 HOH B 63 563 210 HOH HOH . M 5 HOH B 64 564 161 HOH HOH . M 5 HOH B 65 565 82 HOH HOH . M 5 HOH B 66 566 181 HOH HOH . M 5 HOH B 67 567 51 HOH HOH . M 5 HOH B 68 568 32 HOH HOH . M 5 HOH B 69 569 225 HOH HOH . M 5 HOH B 70 570 2 HOH HOH . M 5 HOH B 71 571 212 HOH HOH . M 5 HOH B 72 572 272 HOH HOH . M 5 HOH B 73 573 226 HOH HOH . M 5 HOH B 74 574 266 HOH HOH . M 5 HOH B 75 575 52 HOH HOH . M 5 HOH B 76 576 4 HOH HOH . M 5 HOH B 77 577 213 HOH HOH . M 5 HOH B 78 578 58 HOH HOH . M 5 HOH B 79 579 25 HOH HOH . M 5 HOH B 80 580 240 HOH HOH . M 5 HOH B 81 581 60 HOH HOH . M 5 HOH B 82 582 48 HOH HOH . M 5 HOH B 83 583 46 HOH HOH . M 5 HOH B 84 584 195 HOH HOH . M 5 HOH B 85 585 151 HOH HOH . M 5 HOH B 86 586 159 HOH HOH . M 5 HOH B 87 587 276 HOH HOH . M 5 HOH B 88 588 43 HOH HOH . M 5 HOH B 89 589 10 HOH HOH . M 5 HOH B 90 590 165 HOH HOH . M 5 HOH B 91 591 201 HOH HOH . M 5 HOH B 92 592 265 HOH HOH . M 5 HOH B 93 593 203 HOH HOH . M 5 HOH B 94 594 280 HOH HOH . M 5 HOH B 95 595 277 HOH HOH . M 5 HOH B 96 596 292 HOH HOH . M 5 HOH B 97 597 258 HOH HOH . M 5 HOH B 98 598 62 HOH HOH . M 5 HOH B 99 599 167 HOH HOH . M 5 HOH B 100 600 238 HOH HOH . M 5 HOH B 101 601 257 HOH HOH . M 5 HOH B 102 602 241 HOH HOH . M 5 HOH B 103 603 291 HOH HOH . M 5 HOH B 104 604 33 HOH HOH . M 5 HOH B 105 605 163 HOH HOH . M 5 HOH B 106 606 239 HOH HOH . M 5 HOH B 107 607 50 HOH HOH . M 5 HOH B 108 608 316 HOH HOH . M 5 HOH B 109 609 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 4.742 -13.617 15.129 1 101.73 ? S DMS 401 A 1 HETATM 2 O O DMS . . . C 2 4.153 -14.867 14.633 1 101.8 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . C 2 3.579 -13.048 16.306 1 101.68 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . C 2 4.329 -12.418 13.928 1 101.69 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #