data_7GMD # _model_server_result.job_id q2REzp6Hqw41h-YjbMWg_Q _model_server_result.datetime_utc '2024-11-14 06:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 7GMD # _exptl.entry_id 7GMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GMD _cell.length_a 67.878 _cell.length_b 100.2 _cell.length_c 104.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GMD _atom_sites.fract_transf_matrix[1][1] 0.014732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 402 DMS DMS . E 2 DMS A 1 403 403 DMS DMS . F 2 DMS A 1 404 406 DMS DMS . G 2 DMS A 1 405 407 DMS DMS . H 2 DMS A 1 406 408 DMS DMS . I 3 CL A 1 407 409 CL CL . J 4 R2X A 1 408 501 R2X LIG . K 2 DMS B 1 401 401 DMS DMS . L 2 DMS B 1 402 402 DMS DMS . M 2 DMS B 1 403 501 DMS DMS . N 2 DMS B 1 404 601 DMS DMS . O 5 HOH A 1 501 301 HOH HOH . O 5 HOH A 2 502 63 HOH HOH . O 5 HOH A 3 503 194 HOH HOH . O 5 HOH A 4 504 233 HOH HOH . O 5 HOH A 5 505 143 HOH HOH . O 5 HOH A 6 506 68 HOH HOH . O 5 HOH A 7 507 279 HOH HOH . O 5 HOH A 8 508 67 HOH HOH . O 5 HOH A 9 509 81 HOH HOH . O 5 HOH A 10 510 165 HOH HOH . O 5 HOH A 11 511 308 HOH HOH . O 5 HOH A 12 512 289 HOH HOH . O 5 HOH A 13 513 99 HOH HOH . O 5 HOH A 14 514 293 HOH HOH . O 5 HOH A 15 515 202 HOH HOH . O 5 HOH A 16 516 229 HOH HOH . O 5 HOH A 17 517 300 HOH HOH . O 5 HOH A 18 518 56 HOH HOH . O 5 HOH A 19 519 100 HOH HOH . O 5 HOH A 20 520 66 HOH HOH . O 5 HOH A 21 521 219 HOH HOH . O 5 HOH A 22 522 71 HOH HOH . O 5 HOH A 23 523 259 HOH HOH . O 5 HOH A 24 524 310 HOH HOH . O 5 HOH A 25 525 174 HOH HOH . O 5 HOH A 26 526 97 HOH HOH . O 5 HOH A 27 527 74 HOH HOH . O 5 HOH A 28 528 238 HOH HOH . O 5 HOH A 29 529 220 HOH HOH . O 5 HOH A 30 530 240 HOH HOH . O 5 HOH A 31 531 221 HOH HOH . O 5 HOH A 32 532 3 HOH HOH . O 5 HOH A 33 533 89 HOH HOH . O 5 HOH A 34 534 205 HOH HOH . O 5 HOH A 35 535 86 HOH HOH . O 5 HOH A 36 536 191 HOH HOH . O 5 HOH A 37 537 73 HOH HOH . O 5 HOH A 38 538 70 HOH HOH . O 5 HOH A 39 539 91 HOH HOH . O 5 HOH A 40 540 217 HOH HOH . O 5 HOH A 41 541 103 HOH HOH . O 5 HOH A 42 542 64 HOH HOH . O 5 HOH A 43 543 185 HOH HOH . O 5 HOH A 44 544 161 HOH HOH . O 5 HOH A 45 545 104 HOH HOH . O 5 HOH A 46 546 79 HOH HOH . O 5 HOH A 47 547 84 HOH HOH . O 5 HOH A 48 548 245 HOH HOH . O 5 HOH A 49 549 76 HOH HOH . O 5 HOH A 50 550 75 HOH HOH . O 5 HOH A 51 551 268 HOH HOH . O 5 HOH A 52 552 307 HOH HOH . O 5 HOH A 53 553 106 HOH HOH . O 5 HOH A 54 554 8 HOH HOH . O 5 HOH A 55 555 184 HOH HOH . O 5 HOH A 56 556 197 HOH HOH . O 5 HOH A 57 557 85 HOH HOH . O 5 HOH A 58 558 214 HOH HOH . O 5 HOH A 59 559 313 HOH HOH . O 5 HOH A 60 560 218 HOH HOH . O 5 HOH A 61 561 131 HOH HOH . O 5 HOH A 62 562 246 HOH HOH . O 5 HOH A 63 563 78 HOH HOH . O 5 HOH A 64 564 269 HOH HOH . O 5 HOH A 65 565 152 HOH HOH . O 5 HOH A 66 566 212 HOH HOH . O 5 HOH A 67 567 92 HOH HOH . O 5 HOH A 68 568 140 HOH HOH . O 5 HOH A 69 569 109 HOH HOH . O 5 HOH A 70 570 211 HOH HOH . O 5 HOH A 71 571 77 HOH HOH . O 5 HOH A 72 572 309 HOH HOH . O 5 HOH A 73 573 61 HOH HOH . O 5 HOH A 74 574 90 HOH HOH . O 5 HOH A 75 575 116 HOH HOH . O 5 HOH A 76 576 88 HOH HOH . O 5 HOH A 77 577 80 HOH HOH . O 5 HOH A 78 578 224 HOH HOH . O 5 HOH A 79 579 146 HOH HOH . O 5 HOH A 80 580 96 HOH HOH . O 5 HOH A 81 581 167 HOH HOH . O 5 HOH A 82 582 123 HOH HOH . O 5 HOH A 83 583 111 HOH HOH . O 5 HOH A 84 584 98 HOH HOH . O 5 HOH A 85 585 258 HOH HOH . O 5 HOH A 86 586 206 HOH HOH . O 5 HOH A 87 587 228 HOH HOH . O 5 HOH A 88 588 72 HOH HOH . O 5 HOH A 89 589 102 HOH HOH . O 5 HOH A 90 590 159 HOH HOH . O 5 HOH A 91 591 125 HOH HOH . O 5 HOH A 92 592 108 HOH HOH . O 5 HOH A 93 593 117 HOH HOH . O 5 HOH A 94 594 101 HOH HOH . O 5 HOH A 95 595 264 HOH HOH . O 5 HOH A 96 596 323 HOH HOH . O 5 HOH A 97 597 277 HOH HOH . O 5 HOH A 98 598 119 HOH HOH . O 5 HOH A 99 599 265 HOH HOH . O 5 HOH A 100 600 295 HOH HOH . O 5 HOH A 101 601 188 HOH HOH . O 5 HOH A 102 602 145 HOH HOH . O 5 HOH A 103 603 124 HOH HOH . O 5 HOH A 104 604 120 HOH HOH . O 5 HOH A 105 605 244 HOH HOH . O 5 HOH A 106 606 113 HOH HOH . O 5 HOH A 107 607 1 HOH HOH . O 5 HOH A 108 608 232 HOH HOH . O 5 HOH A 109 609 12 HOH HOH . O 5 HOH A 110 610 128 HOH HOH . O 5 HOH A 111 611 83 HOH HOH . O 5 HOH A 112 612 94 HOH HOH . O 5 HOH A 113 613 216 HOH HOH . O 5 HOH A 114 614 69 HOH HOH . O 5 HOH A 115 615 255 HOH HOH . O 5 HOH A 116 616 314 HOH HOH . O 5 HOH A 117 617 290 HOH HOH . O 5 HOH A 118 618 115 HOH HOH . O 5 HOH A 119 619 163 HOH HOH . O 5 HOH A 120 620 114 HOH HOH . O 5 HOH A 121 621 105 HOH HOH . O 5 HOH A 122 622 130 HOH HOH . O 5 HOH A 123 623 171 HOH HOH . O 5 HOH A 124 624 239 HOH HOH . O 5 HOH A 125 625 112 HOH HOH . O 5 HOH A 126 626 118 HOH HOH . O 5 HOH A 127 627 7 HOH HOH . O 5 HOH A 128 628 126 HOH HOH . O 5 HOH A 129 629 144 HOH HOH . O 5 HOH A 130 630 226 HOH HOH . O 5 HOH A 131 631 132 HOH HOH . O 5 HOH A 132 632 294 HOH HOH . O 5 HOH A 133 633 122 HOH HOH . O 5 HOH A 134 634 142 HOH HOH . O 5 HOH A 135 635 107 HOH HOH . O 5 HOH A 136 636 157 HOH HOH . O 5 HOH A 137 637 311 HOH HOH . O 5 HOH A 138 638 257 HOH HOH . O 5 HOH A 139 639 127 HOH HOH . O 5 HOH A 140 640 147 HOH HOH . O 5 HOH A 141 641 187 HOH HOH . O 5 HOH A 142 642 315 HOH HOH . O 5 HOH A 143 643 195 HOH HOH . O 5 HOH A 144 644 121 HOH HOH . O 5 HOH A 145 645 193 HOH HOH . O 5 HOH A 146 646 189 HOH HOH . O 5 HOH A 147 647 11 HOH HOH . O 5 HOH A 148 648 129 HOH HOH . O 5 HOH A 149 649 179 HOH HOH . O 5 HOH A 150 650 149 HOH HOH . O 5 HOH A 151 651 133 HOH HOH . O 5 HOH A 152 652 242 HOH HOH . O 5 HOH A 153 653 203 HOH HOH . O 5 HOH A 154 654 6 HOH HOH . O 5 HOH A 155 655 230 HOH HOH . O 5 HOH A 156 656 134 HOH HOH . O 5 HOH A 157 657 204 HOH HOH . O 5 HOH A 158 658 177 HOH HOH . O 5 HOH A 159 659 190 HOH HOH . O 5 HOH A 160 660 256 HOH HOH . O 5 HOH A 161 661 151 HOH HOH . O 5 HOH A 162 662 182 HOH HOH . O 5 HOH A 163 663 296 HOH HOH . O 5 HOH A 164 664 288 HOH HOH . O 5 HOH A 165 665 192 HOH HOH . O 5 HOH A 166 666 302 HOH HOH . O 5 HOH A 167 667 172 HOH HOH . O 5 HOH A 168 668 136 HOH HOH . O 5 HOH A 169 669 262 HOH HOH . O 5 HOH A 170 670 241 HOH HOH . O 5 HOH A 171 671 297 HOH HOH . O 5 HOH A 172 672 9 HOH HOH . O 5 HOH A 173 673 298 HOH HOH . O 5 HOH A 174 674 186 HOH HOH . O 5 HOH A 175 675 137 HOH HOH . O 5 HOH A 176 676 135 HOH HOH . O 5 HOH A 177 677 138 HOH HOH . O 5 HOH A 178 678 139 HOH HOH . O 5 HOH A 179 679 237 HOH HOH . O 5 HOH A 180 680 247 HOH HOH . O 5 HOH A 181 681 141 HOH HOH . O 5 HOH A 182 682 176 HOH HOH . O 5 HOH A 183 683 312 HOH HOH . O 5 HOH A 184 684 243 HOH HOH . P 5 HOH B 1 501 181 HOH HOH . P 5 HOH B 2 502 18 HOH HOH . P 5 HOH B 3 503 173 HOH HOH . P 5 HOH B 4 504 213 HOH HOH . P 5 HOH B 5 505 15 HOH HOH . P 5 HOH B 6 506 284 HOH HOH . P 5 HOH B 7 507 170 HOH HOH . P 5 HOH B 8 508 28 HOH HOH . P 5 HOH B 9 509 168 HOH HOH . P 5 HOH B 10 510 272 HOH HOH . P 5 HOH B 11 511 282 HOH HOH . P 5 HOH B 12 512 286 HOH HOH . P 5 HOH B 13 513 285 HOH HOH . P 5 HOH B 14 514 19 HOH HOH . P 5 HOH B 15 515 175 HOH HOH . P 5 HOH B 16 516 299 HOH HOH . P 5 HOH B 17 517 16 HOH HOH . P 5 HOH B 18 518 251 HOH HOH . P 5 HOH B 19 519 261 HOH HOH . P 5 HOH B 20 520 275 HOH HOH . P 5 HOH B 21 521 273 HOH HOH . P 5 HOH B 22 522 23 HOH HOH . P 5 HOH B 23 523 42 HOH HOH . P 5 HOH B 24 524 225 HOH HOH . P 5 HOH B 25 525 248 HOH HOH . P 5 HOH B 26 526 26 HOH HOH . P 5 HOH B 27 527 110 HOH HOH . P 5 HOH B 28 528 24 HOH HOH . P 5 HOH B 29 529 250 HOH HOH . P 5 HOH B 30 530 148 HOH HOH . P 5 HOH B 31 531 31 HOH HOH . P 5 HOH B 32 532 22 HOH HOH . P 5 HOH B 33 533 21 HOH HOH . P 5 HOH B 34 534 14 HOH HOH . P 5 HOH B 35 535 27 HOH HOH . P 5 HOH B 36 536 38 HOH HOH . P 5 HOH B 37 537 231 HOH HOH . P 5 HOH B 38 538 37 HOH HOH . P 5 HOH B 39 539 178 HOH HOH . P 5 HOH B 40 540 39 HOH HOH . P 5 HOH B 41 541 44 HOH HOH . P 5 HOH B 42 542 274 HOH HOH . P 5 HOH B 43 543 45 HOH HOH . P 5 HOH B 44 544 20 HOH HOH . P 5 HOH B 45 545 222 HOH HOH . P 5 HOH B 46 546 93 HOH HOH . P 5 HOH B 47 547 30 HOH HOH . P 5 HOH B 48 548 34 HOH HOH . P 5 HOH B 49 549 5 HOH HOH . P 5 HOH B 50 550 36 HOH HOH . P 5 HOH B 51 551 155 HOH HOH . P 5 HOH B 52 552 156 HOH HOH . P 5 HOH B 53 553 54 HOH HOH . P 5 HOH B 54 554 40 HOH HOH . P 5 HOH B 55 555 41 HOH HOH . P 5 HOH B 56 556 306 HOH HOH . P 5 HOH B 57 557 59 HOH HOH . P 5 HOH B 58 558 53 HOH HOH . P 5 HOH B 59 559 4 HOH HOH . P 5 HOH B 60 560 49 HOH HOH . P 5 HOH B 61 561 82 HOH HOH . P 5 HOH B 62 562 183 HOH HOH . P 5 HOH B 63 563 227 HOH HOH . P 5 HOH B 64 564 208 HOH HOH . P 5 HOH B 65 565 51 HOH HOH . P 5 HOH B 66 566 48 HOH HOH . P 5 HOH B 67 567 25 HOH HOH . P 5 HOH B 68 568 35 HOH HOH . P 5 HOH B 69 569 164 HOH HOH . P 5 HOH B 70 570 154 HOH HOH . P 5 HOH B 71 571 207 HOH HOH . P 5 HOH B 72 572 166 HOH HOH . P 5 HOH B 73 573 55 HOH HOH . P 5 HOH B 74 574 32 HOH HOH . P 5 HOH B 75 575 87 HOH HOH . P 5 HOH B 76 576 52 HOH HOH . P 5 HOH B 77 577 2 HOH HOH . P 5 HOH B 78 578 160 HOH HOH . P 5 HOH B 79 579 210 HOH HOH . P 5 HOH B 80 580 209 HOH HOH . P 5 HOH B 81 581 57 HOH HOH . P 5 HOH B 82 582 43 HOH HOH . P 5 HOH B 83 583 60 HOH HOH . P 5 HOH B 84 584 46 HOH HOH . P 5 HOH B 85 585 13 HOH HOH . P 5 HOH B 86 586 263 HOH HOH . P 5 HOH B 87 587 305 HOH HOH . P 5 HOH B 88 588 321 HOH HOH . P 5 HOH B 89 589 58 HOH HOH . P 5 HOH B 90 590 199 HOH HOH . P 5 HOH B 91 591 253 HOH HOH . P 5 HOH B 92 592 292 HOH HOH . P 5 HOH B 93 593 317 HOH HOH . P 5 HOH B 94 594 260 HOH HOH . P 5 HOH B 95 595 322 HOH HOH . P 5 HOH B 96 596 223 HOH HOH . P 5 HOH B 97 597 319 HOH HOH . P 5 HOH B 98 598 236 HOH HOH . P 5 HOH B 99 599 29 HOH HOH . P 5 HOH B 100 600 234 HOH HOH . P 5 HOH B 101 601 276 HOH HOH . P 5 HOH B 102 602 249 HOH HOH . P 5 HOH B 103 603 215 HOH HOH . P 5 HOH B 104 604 318 HOH HOH . P 5 HOH B 105 605 235 HOH HOH . P 5 HOH B 106 606 62 HOH HOH . P 5 HOH B 107 607 162 HOH HOH . P 5 HOH B 108 608 33 HOH HOH . P 5 HOH B 109 609 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . L 2 -2.878 5.99 25.391 1 97.51 ? S DMS 402 B 1 HETATM 2 O O DMS . . . L 2 -3.656 7.183 25.763 1 97.45 ? O DMS 402 B 1 HETATM 3 C C1 DMS . . . L 2 -1.624 5.858 26.633 1 97.55 ? C1 DMS 402 B 1 HETATM 4 C C2 DMS . . . L 2 -3.879 4.615 25.891 1 97.47 ? C2 DMS 402 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #