data_7GN9 # _model_server_result.job_id XEaf_U1n8G5QWpYOiiLVpQ _model_server_result.datetime_utc '2024-11-12 20:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 7GN9 # _exptl.entry_id 7GN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GN9 _cell.length_a 67.902 _cell.length_b 100.35 _cell.length_c 104.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GN9 _atom_sites.fract_transf_matrix[1][1] 0.014727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 402 DMS DMS . D 2 DMS A 1 402 406 DMS DMS . E 2 DMS A 1 403 407 DMS DMS . F 2 DMS A 1 404 408 DMS DMS . G 3 CL A 1 405 409 CL CL . H 4 RVL A 1 406 501 RVL LIG . I 2 DMS A 1 407 502 DMS DMS . J 2 DMS A 1 408 402 DMS DMS . K 2 DMS A 1 409 501 DMS DMS . L 2 DMS B 1 401 401 DMS DMS . M 2 DMS B 1 402 401 DMS DMS . N 2 DMS B 1 403 601 DMS DMS . O 4 RVL B 1 404 602 RVL LIG . P 5 HOH A 1 501 202 HOH HOH . P 5 HOH A 2 502 74 HOH HOH . P 5 HOH A 3 503 165 HOH HOH . P 5 HOH A 4 504 279 HOH HOH . P 5 HOH A 5 505 269 HOH HOH . P 5 HOH A 6 506 66 HOH HOH . P 5 HOH A 7 507 184 HOH HOH . P 5 HOH A 8 508 194 HOH HOH . P 5 HOH A 9 509 68 HOH HOH . P 5 HOH A 10 510 106 HOH HOH . P 5 HOH A 11 511 67 HOH HOH . P 5 HOH A 12 512 174 HOH HOH . P 5 HOH A 13 513 327 HOH HOH . P 5 HOH A 14 514 240 HOH HOH . P 5 HOH A 15 515 229 HOH HOH . P 5 HOH A 16 516 30 HOH HOH . P 5 HOH A 17 517 73 HOH HOH . P 5 HOH A 18 518 89 HOH HOH . P 5 HOH A 19 519 212 HOH HOH . P 5 HOH A 20 520 97 HOH HOH . P 5 HOH A 21 521 79 HOH HOH . P 5 HOH A 22 522 300 HOH HOH . P 5 HOH A 23 523 86 HOH HOH . P 5 HOH A 24 524 232 HOH HOH . P 5 HOH A 25 525 310 HOH HOH . P 5 HOH A 26 526 92 HOH HOH . P 5 HOH A 27 527 64 HOH HOH . P 5 HOH A 28 528 221 HOH HOH . P 5 HOH A 29 529 308 HOH HOH . P 5 HOH A 30 530 246 HOH HOH . P 5 HOH A 31 531 99 HOH HOH . P 5 HOH A 32 532 81 HOH HOH . P 5 HOH A 33 533 238 HOH HOH . P 5 HOH A 34 534 75 HOH HOH . P 5 HOH A 35 535 109 HOH HOH . P 5 HOH A 36 536 77 HOH HOH . P 5 HOH A 37 537 220 HOH HOH . P 5 HOH A 38 538 321 HOH HOH . P 5 HOH A 39 539 78 HOH HOH . P 5 HOH A 40 540 185 HOH HOH . P 5 HOH A 41 541 307 HOH HOH . P 5 HOH A 42 542 1 HOH HOH . P 5 HOH A 43 543 70 HOH HOH . P 5 HOH A 44 544 87 HOH HOH . P 5 HOH A 45 545 214 HOH HOH . P 5 HOH A 46 546 167 HOH HOH . P 5 HOH A 47 547 76 HOH HOH . P 5 HOH A 48 548 224 HOH HOH . P 5 HOH A 49 549 301 HOH HOH . P 5 HOH A 50 550 268 HOH HOH . P 5 HOH A 51 551 88 HOH HOH . P 5 HOH A 52 552 124 HOH HOH . P 5 HOH A 53 553 103 HOH HOH . P 5 HOH A 54 554 309 HOH HOH . P 5 HOH A 55 555 153 HOH HOH . P 5 HOH A 56 556 117 HOH HOH . P 5 HOH A 57 557 205 HOH HOH . P 5 HOH A 58 558 131 HOH HOH . P 5 HOH A 59 559 85 HOH HOH . P 5 HOH A 60 560 217 HOH HOH . P 5 HOH A 61 561 313 HOH HOH . P 5 HOH A 62 562 69 HOH HOH . P 5 HOH A 63 563 140 HOH HOH . P 5 HOH A 64 564 119 HOH HOH . P 5 HOH A 65 565 146 HOH HOH . P 5 HOH A 66 566 127 HOH HOH . P 5 HOH A 67 567 130 HOH HOH . P 5 HOH A 68 568 104 HOH HOH . P 5 HOH A 69 569 263 HOH HOH . P 5 HOH A 70 570 101 HOH HOH . P 5 HOH A 71 571 197 HOH HOH . P 5 HOH A 72 572 143 HOH HOH . P 5 HOH A 73 573 8 HOH HOH . P 5 HOH A 74 574 254 HOH HOH . P 5 HOH A 75 575 255 HOH HOH . P 5 HOH A 76 576 265 HOH HOH . P 5 HOH A 77 577 98 HOH HOH . P 5 HOH A 78 578 191 HOH HOH . P 5 HOH A 79 579 294 HOH HOH . P 5 HOH A 80 580 210 HOH HOH . P 5 HOH A 81 581 152 HOH HOH . P 5 HOH A 82 582 108 HOH HOH . P 5 HOH A 83 583 188 HOH HOH . P 5 HOH A 84 584 113 HOH HOH . P 5 HOH A 85 585 258 HOH HOH . P 5 HOH A 86 586 311 HOH HOH . P 5 HOH A 87 587 12 HOH HOH . P 5 HOH A 88 588 147 HOH HOH . P 5 HOH A 89 589 204 HOH HOH . P 5 HOH A 90 590 102 HOH HOH . P 5 HOH A 91 591 239 HOH HOH . P 5 HOH A 92 592 157 HOH HOH . P 5 HOH A 93 593 83 HOH HOH . P 5 HOH A 94 594 80 HOH HOH . P 5 HOH A 95 595 61 HOH HOH . P 5 HOH A 96 596 40 HOH HOH . P 5 HOH A 97 597 206 HOH HOH . P 5 HOH A 98 598 290 HOH HOH . P 5 HOH A 99 599 107 HOH HOH . P 5 HOH A 100 600 226 HOH HOH . P 5 HOH A 101 601 145 HOH HOH . P 5 HOH A 102 602 295 HOH HOH . P 5 HOH A 103 603 7 HOH HOH . P 5 HOH A 104 604 159 HOH HOH . P 5 HOH A 105 605 257 HOH HOH . P 5 HOH A 106 606 105 HOH HOH . P 5 HOH A 107 607 314 HOH HOH . P 5 HOH A 108 608 90 HOH HOH . P 5 HOH A 109 609 149 HOH HOH . P 5 HOH A 110 610 144 HOH HOH . P 5 HOH A 111 611 112 HOH HOH . P 5 HOH A 112 612 84 HOH HOH . P 5 HOH A 113 613 218 HOH HOH . P 5 HOH A 114 614 111 HOH HOH . P 5 HOH A 115 615 95 HOH HOH . P 5 HOH A 116 616 116 HOH HOH . P 5 HOH A 117 617 195 HOH HOH . P 5 HOH A 118 618 114 HOH HOH . P 5 HOH A 119 619 72 HOH HOH . P 5 HOH A 120 620 264 HOH HOH . P 5 HOH A 121 621 142 HOH HOH . P 5 HOH A 122 622 219 HOH HOH . P 5 HOH A 123 623 171 HOH HOH . P 5 HOH A 124 624 122 HOH HOH . P 5 HOH A 125 625 179 HOH HOH . P 5 HOH A 126 626 94 HOH HOH . P 5 HOH A 127 627 115 HOH HOH . P 5 HOH A 128 628 288 HOH HOH . P 5 HOH A 129 629 129 HOH HOH . P 5 HOH A 130 630 133 HOH HOH . P 5 HOH A 131 631 187 HOH HOH . P 5 HOH A 132 632 123 HOH HOH . P 5 HOH A 133 633 13 HOH HOH . P 5 HOH A 134 634 303 HOH HOH . P 5 HOH A 135 635 121 HOH HOH . P 5 HOH A 136 636 326 HOH HOH . P 5 HOH A 137 637 118 HOH HOH . P 5 HOH A 138 638 172 HOH HOH . P 5 HOH A 139 639 256 HOH HOH . P 5 HOH A 140 640 134 HOH HOH . P 5 HOH A 141 641 126 HOH HOH . P 5 HOH A 142 642 189 HOH HOH . P 5 HOH A 143 643 322 HOH HOH . P 5 HOH A 144 644 203 HOH HOH . P 5 HOH A 145 645 297 HOH HOH . P 5 HOH A 146 646 11 HOH HOH . P 5 HOH A 147 647 190 HOH HOH . P 5 HOH A 148 648 316 HOH HOH . P 5 HOH A 149 649 151 HOH HOH . P 5 HOH A 150 650 315 HOH HOH . P 5 HOH A 151 651 230 HOH HOH . P 5 HOH A 152 652 136 HOH HOH . P 5 HOH A 153 653 177 HOH HOH . P 5 HOH A 154 654 298 HOH HOH . P 5 HOH A 155 655 9 HOH HOH . P 5 HOH A 156 656 237 HOH HOH . P 5 HOH A 157 657 262 HOH HOH . P 5 HOH A 158 658 138 HOH HOH . P 5 HOH A 159 659 135 HOH HOH . P 5 HOH A 160 660 141 HOH HOH . P 5 HOH A 161 661 137 HOH HOH . P 5 HOH A 162 662 139 HOH HOH . Q 5 HOH B 1 501 173 HOH HOH . Q 5 HOH B 2 502 110 HOH HOH . Q 5 HOH B 3 503 18 HOH HOH . Q 5 HOH B 4 504 168 HOH HOH . Q 5 HOH B 5 505 21 HOH HOH . Q 5 HOH B 6 506 37 HOH HOH . Q 5 HOH B 7 507 170 HOH HOH . Q 5 HOH B 8 508 16 HOH HOH . Q 5 HOH B 9 509 286 HOH HOH . Q 5 HOH B 10 510 272 HOH HOH . Q 5 HOH B 11 511 284 HOH HOH . Q 5 HOH B 12 512 31 HOH HOH . Q 5 HOH B 13 513 22 HOH HOH . Q 5 HOH B 14 514 148 HOH HOH . Q 5 HOH B 15 515 175 HOH HOH . Q 5 HOH B 16 516 319 HOH HOH . Q 5 HOH B 17 517 236 HOH HOH . Q 5 HOH B 18 518 93 HOH HOH . Q 5 HOH B 19 519 225 HOH HOH . Q 5 HOH B 20 520 15 HOH HOH . Q 5 HOH B 21 521 248 HOH HOH . Q 5 HOH B 22 522 273 HOH HOH . Q 5 HOH B 23 523 53 HOH HOH . Q 5 HOH B 24 524 3 HOH HOH . Q 5 HOH B 25 525 54 HOH HOH . Q 5 HOH B 26 526 45 HOH HOH . Q 5 HOH B 27 527 14 HOH HOH . Q 5 HOH B 28 528 23 HOH HOH . Q 5 HOH B 29 529 19 HOH HOH . Q 5 HOH B 30 530 125 HOH HOH . Q 5 HOH B 31 531 285 HOH HOH . Q 5 HOH B 32 532 27 HOH HOH . Q 5 HOH B 33 533 44 HOH HOH . Q 5 HOH B 34 534 193 HOH HOH . Q 5 HOH B 35 535 38 HOH HOH . Q 5 HOH B 36 536 251 HOH HOH . Q 5 HOH B 37 537 32 HOH HOH . Q 5 HOH B 38 538 49 HOH HOH . Q 5 HOH B 39 539 28 HOH HOH . Q 5 HOH B 40 540 5 HOH HOH . Q 5 HOH B 41 541 35 HOH HOH . Q 5 HOH B 42 542 36 HOH HOH . Q 5 HOH B 43 543 199 HOH HOH . Q 5 HOH B 44 544 178 HOH HOH . Q 5 HOH B 45 545 222 HOH HOH . Q 5 HOH B 46 546 41 HOH HOH . Q 5 HOH B 47 547 39 HOH HOH . Q 5 HOH B 48 548 231 HOH HOH . Q 5 HOH B 49 549 156 HOH HOH . Q 5 HOH B 50 550 227 HOH HOH . Q 5 HOH B 51 551 154 HOH HOH . Q 5 HOH B 52 552 160 HOH HOH . Q 5 HOH B 53 553 59 HOH HOH . Q 5 HOH B 54 554 34 HOH HOH . Q 5 HOH B 55 555 82 HOH HOH . Q 5 HOH B 56 556 150 HOH HOH . Q 5 HOH B 57 557 323 HOH HOH . Q 5 HOH B 58 558 207 HOH HOH . Q 5 HOH B 59 559 325 HOH HOH . Q 5 HOH B 60 560 51 HOH HOH . Q 5 HOH B 61 561 43 HOH HOH . Q 5 HOH B 62 562 4 HOH HOH . Q 5 HOH B 63 563 166 HOH HOH . Q 5 HOH B 64 564 60 HOH HOH . Q 5 HOH B 65 565 183 HOH HOH . Q 5 HOH B 66 566 282 HOH HOH . Q 5 HOH B 67 567 306 HOH HOH . Q 5 HOH B 68 568 324 HOH HOH . Q 5 HOH B 69 569 163 HOH HOH . Q 5 HOH B 70 570 318 HOH HOH . Q 5 HOH B 71 571 328 HOH HOH . Q 5 HOH B 72 572 260 HOH HOH . Q 5 HOH B 73 573 52 HOH HOH . Q 5 HOH B 74 574 57 HOH HOH . Q 5 HOH B 75 575 305 HOH HOH . Q 5 HOH B 76 576 58 HOH HOH . Q 5 HOH B 77 577 55 HOH HOH . Q 5 HOH B 78 578 164 HOH HOH . Q 5 HOH B 79 579 46 HOH HOH . Q 5 HOH B 80 580 275 HOH HOH . Q 5 HOH B 81 581 253 HOH HOH . Q 5 HOH B 82 582 215 HOH HOH . Q 5 HOH B 83 583 209 HOH HOH . Q 5 HOH B 84 584 276 HOH HOH . Q 5 HOH B 85 585 48 HOH HOH . Q 5 HOH B 86 586 182 HOH HOH . Q 5 HOH B 87 587 249 HOH HOH . Q 5 HOH B 88 588 292 HOH HOH . Q 5 HOH B 89 589 223 HOH HOH . Q 5 HOH B 90 590 2 HOH HOH . Q 5 HOH B 91 591 234 HOH HOH . Q 5 HOH B 92 592 33 HOH HOH . Q 5 HOH B 93 593 29 HOH HOH . Q 5 HOH B 94 594 235 HOH HOH . Q 5 HOH B 95 595 283 HOH HOH . Q 5 HOH B 96 596 317 HOH HOH . Q 5 HOH B 97 597 162 HOH HOH . Q 5 HOH B 98 598 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 2 -2.954 5.49 25.423 1 94.82 ? S DMS 408 A 1 HETATM 2 O O DMS . . . J 2 -3.294 6.846 25.986 1 94.74 ? O DMS 408 A 1 HETATM 3 C C1 DMS . . . J 2 -1.897 4.632 26.621 1 94.82 ? C1 DMS 408 A 1 HETATM 4 C C2 DMS . . . J 2 -4.388 4.401 25.632 1 94.75 ? C2 DMS 408 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #