data_7GNY # _model_server_result.job_id du7vpjdvCaLEfxvkFg8ZIw _model_server_result.datetime_utc '2024-11-22 01:56:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7gny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7GNY # _exptl.entry_id 7GNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7GNY _cell.length_a 42.799 _cell.length_b 62.695 _cell.length_c 147.487 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7GNY _atom_sites.fract_transf_matrix[1][1] 0.023365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YX6 B 1 201 201 YX6 LIG . D 3 DMS B 1 202 202 DMS DMS . E 4 HOH A 1 201 281 HOH HOH . E 4 HOH A 2 202 82 HOH HOH . E 4 HOH A 3 203 215 HOH HOH . E 4 HOH A 4 204 32 HOH HOH . E 4 HOH A 5 205 225 HOH HOH . E 4 HOH A 6 206 5 HOH HOH . E 4 HOH A 7 207 74 HOH HOH . E 4 HOH A 8 208 258 HOH HOH . E 4 HOH A 9 209 248 HOH HOH . E 4 HOH A 10 210 193 HOH HOH . E 4 HOH A 11 211 57 HOH HOH . E 4 HOH A 12 212 40 HOH HOH . E 4 HOH A 13 213 242 HOH HOH . E 4 HOH A 14 214 115 HOH HOH . E 4 HOH A 15 215 52 HOH HOH . E 4 HOH A 16 216 127 HOH HOH . E 4 HOH A 17 217 7 HOH HOH . E 4 HOH A 18 218 49 HOH HOH . E 4 HOH A 19 219 29 HOH HOH . E 4 HOH A 20 220 28 HOH HOH . E 4 HOH A 21 221 15 HOH HOH . E 4 HOH A 22 222 112 HOH HOH . E 4 HOH A 23 223 116 HOH HOH . E 4 HOH A 24 224 135 HOH HOH . E 4 HOH A 25 225 154 HOH HOH . E 4 HOH A 26 226 279 HOH HOH . E 4 HOH A 27 227 13 HOH HOH . E 4 HOH A 28 228 100 HOH HOH . E 4 HOH A 29 229 65 HOH HOH . E 4 HOH A 30 230 18 HOH HOH . E 4 HOH A 31 231 204 HOH HOH . E 4 HOH A 32 232 105 HOH HOH . E 4 HOH A 33 233 117 HOH HOH . E 4 HOH A 34 234 51 HOH HOH . E 4 HOH A 35 235 25 HOH HOH . E 4 HOH A 36 236 83 HOH HOH . E 4 HOH A 37 237 292 HOH HOH . E 4 HOH A 38 238 89 HOH HOH . E 4 HOH A 39 239 31 HOH HOH . E 4 HOH A 40 240 53 HOH HOH . E 4 HOH A 41 241 210 HOH HOH . E 4 HOH A 42 242 50 HOH HOH . E 4 HOH A 43 243 153 HOH HOH . E 4 HOH A 44 244 10 HOH HOH . E 4 HOH A 45 245 98 HOH HOH . E 4 HOH A 46 246 185 HOH HOH . E 4 HOH A 47 247 216 HOH HOH . E 4 HOH A 48 248 58 HOH HOH . E 4 HOH A 49 249 93 HOH HOH . E 4 HOH A 50 250 95 HOH HOH . E 4 HOH A 51 251 263 HOH HOH . E 4 HOH A 52 252 3 HOH HOH . E 4 HOH A 53 253 94 HOH HOH . E 4 HOH A 54 254 41 HOH HOH . E 4 HOH A 55 255 245 HOH HOH . E 4 HOH A 56 256 43 HOH HOH . E 4 HOH A 57 257 118 HOH HOH . E 4 HOH A 58 258 97 HOH HOH . E 4 HOH A 59 259 34 HOH HOH . E 4 HOH A 60 260 11 HOH HOH . E 4 HOH A 61 261 182 HOH HOH . E 4 HOH A 62 262 30 HOH HOH . E 4 HOH A 63 263 317 HOH HOH . E 4 HOH A 64 264 20 HOH HOH . E 4 HOH A 65 265 293 HOH HOH . E 4 HOH A 66 266 297 HOH HOH . E 4 HOH A 67 267 299 HOH HOH . E 4 HOH A 68 268 213 HOH HOH . E 4 HOH A 69 269 244 HOH HOH . E 4 HOH A 70 270 172 HOH HOH . E 4 HOH A 71 271 85 HOH HOH . E 4 HOH A 72 272 120 HOH HOH . E 4 HOH A 73 273 113 HOH HOH . E 4 HOH A 74 274 319 HOH HOH . E 4 HOH A 75 275 106 HOH HOH . E 4 HOH A 76 276 164 HOH HOH . E 4 HOH A 77 277 104 HOH HOH . E 4 HOH A 78 278 128 HOH HOH . E 4 HOH A 79 279 70 HOH HOH . E 4 HOH A 80 280 285 HOH HOH . E 4 HOH A 81 281 73 HOH HOH . E 4 HOH A 82 282 207 HOH HOH . E 4 HOH A 83 283 160 HOH HOH . E 4 HOH A 84 284 60 HOH HOH . E 4 HOH A 85 285 67 HOH HOH . E 4 HOH A 86 286 302 HOH HOH . E 4 HOH A 87 287 250 HOH HOH . E 4 HOH A 88 288 181 HOH HOH . E 4 HOH A 89 289 226 HOH HOH . E 4 HOH A 90 290 180 HOH HOH . E 4 HOH A 91 291 129 HOH HOH . E 4 HOH A 92 292 235 HOH HOH . E 4 HOH A 93 293 126 HOH HOH . E 4 HOH A 94 294 12 HOH HOH . E 4 HOH A 95 295 229 HOH HOH . E 4 HOH A 96 296 157 HOH HOH . E 4 HOH A 97 297 189 HOH HOH . E 4 HOH A 98 298 21 HOH HOH . E 4 HOH A 99 299 168 HOH HOH . E 4 HOH A 100 300 146 HOH HOH . E 4 HOH A 101 301 23 HOH HOH . E 4 HOH A 102 302 322 HOH HOH . E 4 HOH A 103 303 232 HOH HOH . E 4 HOH A 104 304 123 HOH HOH . E 4 HOH A 105 305 257 HOH HOH . E 4 HOH A 106 306 196 HOH HOH . E 4 HOH A 107 307 238 HOH HOH . E 4 HOH A 108 308 81 HOH HOH . E 4 HOH A 109 309 124 HOH HOH . E 4 HOH A 110 310 16 HOH HOH . E 4 HOH A 111 311 324 HOH HOH . E 4 HOH A 112 312 262 HOH HOH . E 4 HOH A 113 313 249 HOH HOH . E 4 HOH A 114 314 291 HOH HOH . E 4 HOH A 115 315 159 HOH HOH . E 4 HOH A 116 316 151 HOH HOH . E 4 HOH A 117 317 132 HOH HOH . E 4 HOH A 118 318 304 HOH HOH . E 4 HOH A 119 319 294 HOH HOH . E 4 HOH A 120 320 195 HOH HOH . E 4 HOH A 121 321 209 HOH HOH . E 4 HOH A 122 322 111 HOH HOH . E 4 HOH A 123 323 316 HOH HOH . E 4 HOH A 124 324 88 HOH HOH . E 4 HOH A 125 325 323 HOH HOH . E 4 HOH A 126 326 273 HOH HOH . E 4 HOH A 127 327 283 HOH HOH . E 4 HOH A 128 328 186 HOH HOH . E 4 HOH A 129 329 47 HOH HOH . E 4 HOH A 130 330 198 HOH HOH . E 4 HOH A 131 331 167 HOH HOH . E 4 HOH A 132 332 246 HOH HOH . E 4 HOH A 133 333 141 HOH HOH . E 4 HOH A 134 334 310 HOH HOH . E 4 HOH A 135 335 199 HOH HOH . E 4 HOH A 136 336 208 HOH HOH . E 4 HOH A 137 337 282 HOH HOH . E 4 HOH A 138 338 188 HOH HOH . E 4 HOH A 139 339 329 HOH HOH . E 4 HOH A 140 340 241 HOH HOH . E 4 HOH A 141 341 327 HOH HOH . E 4 HOH A 142 342 313 HOH HOH . E 4 HOH A 143 343 243 HOH HOH . E 4 HOH A 144 344 328 HOH HOH . E 4 HOH A 145 345 192 HOH HOH . E 4 HOH A 146 346 203 HOH HOH . E 4 HOH A 147 347 45 HOH HOH . E 4 HOH A 148 348 275 HOH HOH . E 4 HOH A 149 349 330 HOH HOH . E 4 HOH A 150 350 170 HOH HOH . E 4 HOH A 151 351 92 HOH HOH . E 4 HOH A 152 352 219 HOH HOH . E 4 HOH A 153 353 251 HOH HOH . E 4 HOH A 154 354 290 HOH HOH . E 4 HOH A 155 355 131 HOH HOH . E 4 HOH A 156 356 320 HOH HOH . E 4 HOH A 157 357 174 HOH HOH . E 4 HOH A 158 358 266 HOH HOH . E 4 HOH A 159 359 214 HOH HOH . F 4 HOH B 1 301 286 HOH HOH . F 4 HOH B 2 302 231 HOH HOH . F 4 HOH B 3 303 90 HOH HOH . F 4 HOH B 4 304 277 HOH HOH . F 4 HOH B 5 305 148 HOH HOH . F 4 HOH B 6 306 288 HOH HOH . F 4 HOH B 7 307 59 HOH HOH . F 4 HOH B 8 308 134 HOH HOH . F 4 HOH B 9 309 169 HOH HOH . F 4 HOH B 10 310 4 HOH HOH . F 4 HOH B 11 311 177 HOH HOH . F 4 HOH B 12 312 139 HOH HOH . F 4 HOH B 13 313 145 HOH HOH . F 4 HOH B 14 314 8 HOH HOH . F 4 HOH B 15 315 42 HOH HOH . F 4 HOH B 16 316 125 HOH HOH . F 4 HOH B 17 317 1 HOH HOH . F 4 HOH B 18 318 284 HOH HOH . F 4 HOH B 19 319 166 HOH HOH . F 4 HOH B 20 320 200 HOH HOH . F 4 HOH B 21 321 79 HOH HOH . F 4 HOH B 22 322 19 HOH HOH . F 4 HOH B 23 323 152 HOH HOH . F 4 HOH B 24 324 39 HOH HOH . F 4 HOH B 25 325 69 HOH HOH . F 4 HOH B 26 326 9 HOH HOH . F 4 HOH B 27 327 295 HOH HOH . F 4 HOH B 28 328 179 HOH HOH . F 4 HOH B 29 329 17 HOH HOH . F 4 HOH B 30 330 76 HOH HOH . F 4 HOH B 31 331 33 HOH HOH . F 4 HOH B 32 332 130 HOH HOH . F 4 HOH B 33 333 171 HOH HOH . F 4 HOH B 34 334 2 HOH HOH . F 4 HOH B 35 335 68 HOH HOH . F 4 HOH B 36 336 101 HOH HOH . F 4 HOH B 37 337 38 HOH HOH . F 4 HOH B 38 338 14 HOH HOH . F 4 HOH B 39 339 162 HOH HOH . F 4 HOH B 40 340 35 HOH HOH . F 4 HOH B 41 341 77 HOH HOH . F 4 HOH B 42 342 119 HOH HOH . F 4 HOH B 43 343 252 HOH HOH . F 4 HOH B 44 344 114 HOH HOH . F 4 HOH B 45 345 37 HOH HOH . F 4 HOH B 46 346 230 HOH HOH . F 4 HOH B 47 347 142 HOH HOH . F 4 HOH B 48 348 71 HOH HOH . F 4 HOH B 49 349 173 HOH HOH . F 4 HOH B 50 350 96 HOH HOH . F 4 HOH B 51 351 91 HOH HOH . F 4 HOH B 52 352 187 HOH HOH . F 4 HOH B 53 353 36 HOH HOH . F 4 HOH B 54 354 265 HOH HOH . F 4 HOH B 55 355 140 HOH HOH . F 4 HOH B 56 356 80 HOH HOH . F 4 HOH B 57 357 147 HOH HOH . F 4 HOH B 58 358 72 HOH HOH . F 4 HOH B 59 359 103 HOH HOH . F 4 HOH B 60 360 136 HOH HOH . F 4 HOH B 61 361 84 HOH HOH . F 4 HOH B 62 362 26 HOH HOH . F 4 HOH B 63 363 190 HOH HOH . F 4 HOH B 64 364 296 HOH HOH . F 4 HOH B 65 365 6 HOH HOH . F 4 HOH B 66 366 150 HOH HOH . F 4 HOH B 67 367 55 HOH HOH . F 4 HOH B 68 368 239 HOH HOH . F 4 HOH B 69 369 24 HOH HOH . F 4 HOH B 70 370 27 HOH HOH . F 4 HOH B 71 371 75 HOH HOH . F 4 HOH B 72 372 137 HOH HOH . F 4 HOH B 73 373 102 HOH HOH . F 4 HOH B 74 374 267 HOH HOH . F 4 HOH B 75 375 156 HOH HOH . F 4 HOH B 76 376 54 HOH HOH . F 4 HOH B 77 377 205 HOH HOH . F 4 HOH B 78 378 22 HOH HOH . F 4 HOH B 79 379 56 HOH HOH . F 4 HOH B 80 380 108 HOH HOH . F 4 HOH B 81 381 197 HOH HOH . F 4 HOH B 82 382 223 HOH HOH . F 4 HOH B 83 383 107 HOH HOH . F 4 HOH B 84 384 253 HOH HOH . F 4 HOH B 85 385 149 HOH HOH . F 4 HOH B 86 386 62 HOH HOH . F 4 HOH B 87 387 321 HOH HOH . F 4 HOH B 88 388 201 HOH HOH . F 4 HOH B 89 389 99 HOH HOH . F 4 HOH B 90 390 46 HOH HOH . F 4 HOH B 91 391 247 HOH HOH . F 4 HOH B 92 392 222 HOH HOH . F 4 HOH B 93 393 224 HOH HOH . F 4 HOH B 94 394 314 HOH HOH . F 4 HOH B 95 395 61 HOH HOH . F 4 HOH B 96 396 280 HOH HOH . F 4 HOH B 97 397 66 HOH HOH . F 4 HOH B 98 398 133 HOH HOH . F 4 HOH B 99 399 183 HOH HOH . F 4 HOH B 100 400 109 HOH HOH . F 4 HOH B 101 401 300 HOH HOH . F 4 HOH B 102 402 206 HOH HOH . F 4 HOH B 103 403 64 HOH HOH . F 4 HOH B 104 404 48 HOH HOH . F 4 HOH B 105 405 325 HOH HOH . F 4 HOH B 106 406 110 HOH HOH . F 4 HOH B 107 407 278 HOH HOH . F 4 HOH B 108 408 301 HOH HOH . F 4 HOH B 109 409 178 HOH HOH . F 4 HOH B 110 410 276 HOH HOH . F 4 HOH B 111 411 194 HOH HOH . F 4 HOH B 112 412 163 HOH HOH . F 4 HOH B 113 413 212 HOH HOH . F 4 HOH B 114 414 44 HOH HOH . F 4 HOH B 115 415 165 HOH HOH . F 4 HOH B 116 416 78 HOH HOH . F 4 HOH B 117 417 155 HOH HOH . F 4 HOH B 118 418 298 HOH HOH . F 4 HOH B 119 419 233 HOH HOH . F 4 HOH B 120 420 287 HOH HOH . F 4 HOH B 121 421 87 HOH HOH . F 4 HOH B 122 422 86 HOH HOH . F 4 HOH B 123 423 121 HOH HOH . F 4 HOH B 124 424 289 HOH HOH . F 4 HOH B 125 425 220 HOH HOH . F 4 HOH B 126 426 303 HOH HOH . F 4 HOH B 127 427 144 HOH HOH . F 4 HOH B 128 428 274 HOH HOH . F 4 HOH B 129 429 237 HOH HOH . F 4 HOH B 130 430 161 HOH HOH . F 4 HOH B 131 431 311 HOH HOH . F 4 HOH B 132 432 138 HOH HOH . F 4 HOH B 133 433 315 HOH HOH . F 4 HOH B 134 434 306 HOH HOH . F 4 HOH B 135 435 217 HOH HOH . F 4 HOH B 136 436 269 HOH HOH . F 4 HOH B 137 437 236 HOH HOH . F 4 HOH B 138 438 227 HOH HOH . F 4 HOH B 139 439 308 HOH HOH . F 4 HOH B 140 440 256 HOH HOH . F 4 HOH B 141 441 312 HOH HOH . F 4 HOH B 142 442 318 HOH HOH . F 4 HOH B 143 443 234 HOH HOH . F 4 HOH B 144 444 221 HOH HOH . F 4 HOH B 145 445 191 HOH HOH . F 4 HOH B 146 446 326 HOH HOH . F 4 HOH B 147 447 63 HOH HOH . F 4 HOH B 148 448 184 HOH HOH . F 4 HOH B 149 449 309 HOH HOH . F 4 HOH B 150 450 122 HOH HOH . F 4 HOH B 151 451 211 HOH HOH . F 4 HOH B 152 452 255 HOH HOH . F 4 HOH B 153 453 268 HOH HOH . F 4 HOH B 154 454 264 HOH HOH . F 4 HOH B 155 455 261 HOH HOH . F 4 HOH B 156 456 259 HOH HOH . F 4 HOH B 157 457 271 HOH HOH . F 4 HOH B 158 458 158 HOH HOH . F 4 HOH B 159 459 305 HOH HOH . F 4 HOH B 160 460 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -21.01 -1.181 -48.421 1 59.4 ? S DMS 202 B 1 HETATM 2 O O DMS . . . D 3 -21.703 0.155 -48.583 1 61.89 ? O DMS 202 B 1 HETATM 3 C C1 DMS . . . D 3 -20.514 -1.689 -50.06 1 55.99 ? C1 DMS 202 B 1 HETATM 4 C C2 DMS . . . D 3 -22.29 -2.367 -48.182 1 56.08 ? C2 DMS 202 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #